RNA–Protein interactions for RNA: YDR077W

SED1, Transcript of Major stress-induced structural GPI-cell wall glycoprotein, yeast

Gene SED1, Length 1,017 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SED1	YDR077W	DUS3	Q06053	668 aa	Known RBP	10.49	□□□□□ -0.73
SED1	YDR077W	WHI4	Q07655	649 aa	Known RBP	10.49	□□□□□ -0.73
SED1	YDR077W	YAP7	Q08182	245 aa		10.49	□□□□□ -0.73
SED1	YDR077W	PDC1	P06169	563 aa	Known RBP	10.48	□□□□□ -0.73
SED1	YDR077W	SRD1	P09007	221 aa		10.48	□□□□□ -0.73
SED1	YDR077W	SSA4	P22202	642 aa	Known RBP	10.48	□□□□□ -0.73
SED1	YDR077W	SUV3	P32580	737 aa		10.48	□□□□□ -0.73
SED1	YDR077W	UTR4	P32626	227 aa		10.48	□□□□□ -0.73
SED1	YDR077W	CTM1	P38818	585 aa		10.48	□□□□□ -0.73
SED1	YDR077W	GPD2	P41911	440 aa	Known RBP	10.48	□□□□□ -0.73
SED1	YDR077W	PTA1	Q01329	785 aa	Predicted RBP	10.48	□□□□□ -0.73
SED1	YDR077W	YPL216W	Q08964	1102 aa		10.48	□□□□□ -0.73
SED1	YDR077W	CDC19	P00549	500 aa	Known RBP	10.47	□□□□□ -0.73
SED1	YDR077W	CLN3	P13365	580 aa		10.47	□□□□□ -0.73
SED1	YDR077W	ESS1	P22696	170 aa		10.47	□□□□□ -0.73
SED1	YDR077W	SHP1	P34223	423 aa		10.47	□□□□□ -0.73
SED1	YDR077W	TOS3	P43637	560 aa		10.47	□□□□□ -0.73
SED1	YDR077W	STU2	P46675	888 aa		10.47	□□□□□ -0.73
SED1	YDR077W	YGR125W	P53273	1036 aa		10.47	□□□□□ -0.73
SED1	YDR077W	YCG1	Q06680	1035 aa		10.47	□□□□□ -0.73
SED1	YDR077W	CFT2	Q12102	859 aa	Predicted RBP	10.47	□□□□□ -0.73
SED1	YDR077W	MAK16	P10962	306 aa	Predicted RBP	10.46	□□□□□ -0.73
SED1	YDR077W	SUP45	P12385	437 aa	Known RBP	10.46	□□□□□ -0.73
SED1	YDR077W	PRP22	P24384	1145 aa	Known RBP	10.46	□□□□□ -0.73
SED1	YDR077W	SEC65	P29478	273 aa		10.46	□□□□□ -0.73
SED1	YDR077W	MNR2	P35724	969 aa		10.46	□□□□□ -0.73
SED1	YDR077W	BSD2	P38356	321 aa		10.46	□□□□□ -0.73
SED1	YDR077W	BIM1	P40013	344 aa		10.46	□□□□□ -0.73
SED1	YDR077W	YFL034W	P43564	1073 aa		10.46	□□□□□ -0.73
SED1	YDR077W	ZPR1	P53303	486 aa	Known RBP	10.46	□□□□□ -0.73
SED1	YDR077W	DIP5	P53388	608 aa		10.46	□□□□□ -0.73
SED1	YDR077W	ISA1	Q07821	250 aa	Predicted RBP	10.46	□□□□□ -0.73
SED1	YDR077W	YOL075C	Q08234	1294 aa		10.46	□□□□□ -0.73
SED1	YDR077W	SPO11	P23179	398 aa		10.45	□□□□□ -0.74
SED1	YDR077W	PKC1	P24583	1151 aa		10.45	□□□□□ -0.74
SED1	YDR077W	CDC60	P26637	1090 aa	Known RBP	10.45	□□□□□ -0.74
SED1	YDR077W	EUG1	P32474	517 aa		10.45	□□□□□ -0.74
SED1	YDR077W	UBP11	P36026	717 aa		10.45	□□□□□ -0.74
SED1	YDR077W	MIP6	P38760	659 aa	Known RBP	10.45	□□□□□ -0.74
SED1	YDR077W	HUL4	P40985	892 aa		10.45	□□□□□ -0.74
SED1	YDR077W	SCY1	P53009	804 aa		10.45	□□□□□ -0.74
SED1	YDR077W	SVF1	Q05515	481 aa		10.45	□□□□□ -0.74
SED1	YDR077W	YLR326W	Q06170	240 aa	Known RBP	10.45	□□□□□ -0.74
SED1	YDR077W	CRD1	Q07560	283 aa		10.45	□□□□□ -0.74
SED1	YDR077W	RPS6A	P0CX37	236 aa	Known RBP	10.44	□□□□□ -0.74
SED1	YDR077W	RPS6B	P0CX38	236 aa	Predicted RBP	10.44	□□□□□ -0.74
SED1	YDR077W	TCP1	P12612	559 aa	Known RBP	10.44	□□□□□ -0.74
SED1	YDR077W	RPC53	P25441	422 aa		10.44	□□□□□ -0.74
SED1	YDR077W	LEO1	P38439	464 aa		10.44	□□□□□ -0.74
SED1	YDR077W	RPN3	P40016	523 aa	Known RBP	10.44	□□□□□ -0.74
SED1	YDR077W	FIS1	P40515	155 aa		10.44	□□□□□ -0.74
SED1	YDR077W	RBA50	Q04418	439 aa		10.44	□□□□□ -0.74
SED1	YDR077W	YLR287C	Q05881	355 aa		10.44	□□□□□ -0.74
SED1	YDR077W	COG4	Q06096	861 aa		10.44	□□□□□ -0.74
SED1	YDR077W	TCO89	Q08921	799 aa		10.44	□□□□□ -0.74
SED1	YDR077W	PCK1	P10963	549 aa		10.43	□□□□□ -0.74
SED1	YDR077W	RPC25	P35718	212 aa		10.43	□□□□□ -0.74
SED1	YDR077W	SHM1	P37292	490 aa	Predicted RBP	10.43	□□□□□ -0.74
SED1	YDR077W	RTT107	P38850	1070 aa		10.43	□□□□□ -0.74
SED1	YDR077W	OSW7	P43611	510 aa		10.43	□□□□□ -0.74
SED1	YDR077W	STR2	P47164	639 aa		10.43	□□□□□ -0.74
SED1	YDR077W	NBP1	P52919	319 aa	Predicted RBP	10.43	□□□□□ -0.74
SED1	YDR077W	JIP4	Q03361	876 aa		10.43	□□□□□ -0.74
SED1	YDR077W	YDL057W	Q07379	328 aa		10.43	□□□□□ -0.74
SED1	YDR077W	SPO75	Q07798	868 aa		10.43	□□□□□ -0.74
SED1	YDR077W	APL4	Q12028	832 aa		10.43	□□□□□ -0.74
SED1	YDR077W	MED1	Q12321	566 aa		10.43	□□□□□ -0.74
SED1	YDR077W	TKL1	P23254	680 aa	Known RBP	10.42	□□□□□ -0.74
SED1	YDR077W	MRF1	P30775	413 aa	Predicted RBP	10.42	□□□□□ -0.74
SED1	YDR077W	SEC8	P32855	1065 aa		10.42	□□□□□ -0.74
SED1	YDR077W	ULP2	P40537	1034 aa	Predicted RBP	10.42	□□□□□ -0.74
SED1	YDR077W	CTR1	P49573	406 aa		10.42	□□□□□ -0.74
SED1	YDR077W	UBP15	P50101	1230 aa		10.42	□□□□□ -0.74
SED1	YDR077W	VID30	P53076	958 aa		10.42	□□□□□ -0.74
SED1	YDR077W	TOF1	P53840	1238 aa		10.42	□□□□□ -0.74
SED1	YDR077W	NCS2	P53923	493 aa	Predicted RBP	10.42	□□□□□ -0.74
SED1	YDR077W	YPL277C	Q08989	487 aa		10.42	□□□□□ -0.74
SED1	YDR077W	HMI1	Q12039	706 aa		10.42	□□□□□ -0.74
SED1	YDR077W	ERP3	Q12403	225 aa		10.42	□□□□□ -0.74
SED1	YDR077W	HVG1	P0CE11	249 aa		10.41	□□□□□ -0.74
SED1	YDR077W	IXR1	P33417	597 aa		10.41	□□□□□ -0.74
SED1	YDR077W	PXL1	P36166	706 aa		10.41	□□□□□ -0.74
SED1	YDR077W	REG2	P38232	338 aa		10.41	□□□□□ -0.74
SED1	YDR077W	EFM2	P38347	419 aa		10.41	□□□□□ -0.74
SED1	YDR077W	HMF1	P40037	129 aa	Known RBP	10.41	□□□□□ -0.74
SED1	YDR077W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	10.41	□□□□□ -0.74	not detected
SED1	YDR077W	YGL039W	P53183	348 aa	Known RBP	10.41	□□□□□ -0.74
SED1	YDR077W	CUR1	Q06469	252 aa		10.41	□□□□□ -0.74
SED1	YDR077W	RRP6	Q12149	733 aa	Known RBP	10.41	□□□□□ -0.74
SED1	YDR077W	SSB1	P11484	613 aa	Known RBP	10.4	□□□□□ -0.74
SED1	YDR077W	APL1	P27351	700 aa		10.4	□□□□□ -0.74
SED1	YDR077W	VPS29	P38759	282 aa		10.4	□□□□□ -0.74
SED1	YDR077W	VFA1	P40080	203 aa		10.4	□□□□□ -0.74
SED1	YDR077W	SSB2	P40150	613 aa	Known RBP	10.4	□□□□□ -0.74
SED1	YDR077W	CCM1	P48237	864 aa	Predicted RBP	10.4	□□□□□ -0.74
SED1	YDR077W	SLD5	Q03406	294 aa		10.4	□□□□□ -0.74
SED1	YDR077W	VPS38	Q05919	439 aa		10.4	□□□□□ -0.74
SED1	YDR077W	CST9	Q06032	482 aa		10.4	□□□□□ -0.74
SED1	YDR077W	CWC2	Q12046	339 aa	Predicted RBP	10.4	□□□□□ -0.74
SED1	YDR077W	ATG9	Q12142	997 aa		10.4	□□□□□ -0.74

Retrieved 100 of 5,963 RNA–protein pairs in 113.4 ms