Protein–RNA interactions for Protein: P40016

RPN3, 26S proteasome regulatory subunit RPN3, yeastyeast

Known RBP Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN3P40016 YML009W-BYML009W-B 477 nt22.64■■□□□ 1.21
RPN3P40016 NSR1YGR159C 1245 nt22.47■■□□□ 1.19
RPN3P40016 NOP1YDL014W 984 nt22.09■■□□□ 1.13
RPN3P40016 YKL036CYKL036C 393 nt20.47■□□□□ 0.87
RPN3P40016 MDJ1YFL016C 1536 nt19.81■□□□□ 0.76
RPN3P40016 Q0297Q0297 156 nt19.38■□□□□ 0.69
RPN3P40016 SRX1YKL086W 384 nt19.31■□□□□ 0.68
RPN3P40016 YJL027CYJL027C 417 nt19.11■□□□□ 0.65
RPN3P40016 SCS3YGL126W 1143 nt18.66■□□□□ 0.58
RPN3P40016 YCR051WYCR051W 669 nt18.3■□□□□ 0.52
RPN3P40016 YOL085CYOL085C 342 nt17.73■□□□□ 0.43
RPN3P40016 DBP2YNL112W 1641 nt17.59■□□□□ 0.41
RPN3P40016 PKP1YIL042C 1185 nt17.42■□□□□ 0.38
RPN3P40016 TRN1tP(UGG)A 72 nt17.39■□□□□ 0.37
RPN3P40016 SUF9tP(UGG)F 72 nt17.39■□□□□ 0.37
RPN3P40016 SUF8tP(UGG)H 72 nt17.39■□□□□ 0.37
RPN3P40016 tP(UGG)LtP(UGG)L 72 nt17.39■□□□□ 0.37
RPN3P40016 SUF7tP(UGG)M 72 nt17.39■□□□□ 0.37
RPN3P40016 tP(UGG)N1tP(UGG)N1 72 nt17.39■□□□□ 0.37
RPN3P40016 tP(UGG)N2tP(UGG)N2 72 nt17.39■□□□□ 0.37
RPN3P40016 tP(UGG)O1tP(UGG)O1 72 nt17.39■□□□□ 0.37
RPN3P40016 SUF11tP(UGG)O2 72 nt17.39■□□□□ 0.37
RPN3P40016 RPP1BYDL130W 321 nt17.38■□□□□ 0.37
RPN3P40016 CCC1YLR220W 969 nt17.19■□□□□ 0.34
RPN3P40016 YBR190WYBR190W 312 nt16.9■□□□□ 0.3
RPN3P40016 ATS1YAL020C 1002 nt16.73■□□□□ 0.27
RPN3P40016 SCJ1YMR214W 1134 nt16.69■□□□□ 0.26
RPN3P40016 PET122YER153C 765 nt16.58■□□□□ 0.24
RPN3P40016 RVS167YDR388W 1449 nt16.55■□□□□ 0.24
RPN3P40016 RTC3YHR087W 336 nt16.5■□□□□ 0.23
RPN3P40016 tP(UGG)O3tP(UGG)O3 72 nt16.49■□□□□ 0.23
RPN3P40016 SCR1SCR1 522 nt16.43■□□□□ 0.22
RPN3P40016 RRN5YLR141W 1092 nt16.13■□□□□ 0.17
RPN3P40016 SHR5YOL110W 714 nt16.02■□□□□ 0.16
RPN3P40016 YDJ1YNL064C 1230 nt15.97■□□□□ 0.15
RPN3P40016 YER088W-BYER088W-B 147 nt15.81■□□□□ 0.12
RPN3P40016 RSB1YOR049C 1065 nt15.8■□□□□ 0.12
RPN3P40016 GAR1YHR089C 618 nt15.56■□□□□ 0.08
RPN3P40016 DEP1YAL013W 1218 nt15.5■□□□□ 0.07
RPN3P40016 URN1YPR152C 1398 nt15.49■□□□□ 0.07
RPN3P40016 PST2YDR032C 597 nt15.49■□□□□ 0.07
RPN3P40016 RPN10YHR200W 807 nt15.3■□□□□ 0.04
RPN3P40016 YNL208WYNL208W 600 nt15.29■□□□□ 0.04
RPN3P40016 OPI9YLR338W 858 nt15.27■□□□□ 0.04
RPN3P40016 PUT4YOR348C 1884 nt15.25■□□□□ 0.03
RPN3P40016 SAH1YER043C 1350 nt15.12■□□□□ 0.01
RPN3P40016 TIR1YER011W 765 nt15.05■□□□□ -0
RPN3P40016 ARE1YCR048W 1833 nt15.01□□□□□ -0.01
RPN3P40016 YKL097CYKL097C 411 nt14.91□□□□□ -0.02
RPN3P40016 SSA1YAL005C 1929 nt14.84□□□□□ -0.03
RPN3P40016 PUN1YLR414C 792 nt14.83□□□□□ -0.04
RPN3P40016 SHU1YHL006C 453 nt14.82□□□□□ -0.04
RPN3P40016 YHR049C-AYHR049C-A 297 nt14.8□□□□□ -0.04
RPN3P40016 YJR018WYJR018W 363 nt14.8□□□□□ -0.04
RPN3P40016 POA1YBR022W 534 nt14.78□□□□□ -0.04
RPN3P40016 PTC2YER089C 1395 nt14.6□□□□□ -0.07
RPN3P40016 SRB2YHR041C 633 nt14.6□□□□□ -0.07
RPN3P40016 YJR120WYJR120W 351 nt14.59□□□□□ -0.07
RPN3P40016 YAL037C-BYAL037C-B 975 nt14.55□□□□□ -0.08
RPN3P40016 RPP2BYDR382W 333 nt14.52□□□□□ -0.09
RPN3P40016 BUD23YCR047C 828 nt14.47□□□□□ -0.09
RPN3P40016 BSC6YOL137W 1494 nt14.44□□□□□ -0.1
RPN3P40016 NAB2YGL122C 1578 nt14.41□□□□□ -0.1
RPN3P40016 WWM1YFL010C 636 nt14.39□□□□□ -0.11
RPN3P40016 YGR021WYGR021W 873 nt14.35□□□□□ -0.11
RPN3P40016 HOM6YJR139C 1080 nt14.31□□□□□ -0.12
RPN3P40016 YOR139CYOR139C 393 nt14.3□□□□□ -0.12
RPN3P40016 INM2YDR287W 879 nt14.28□□□□□ -0.12
RPN3P40016 BDH2YAL061W 1254 nt14.26□□□□□ -0.13
RPN3P40016 DAL1YIR027C 1383 nt14.24□□□□□ -0.13
RPN3P40016 MNP1YGL068W 585 nt14.22□□□□□ -0.13
RPN3P40016 FIS1YIL065C 468 nt14.21□□□□□ -0.13
RPN3P40016 SSA3YBL075C 1950 nt14.21□□□□□ -0.13
RPN3P40016 FPR4YLR449W 1179 nt14.19□□□□□ -0.14
RPN3P40016 YFL021C-AYFL021C-A 855 nt14.18□□□□□ -0.14
RPN3P40016 NPL3YDR432W 1245 nt14.15□□□□□ -0.14
RPN3P40016 YBL100CYBL100C 315 nt14.13□□□□□ -0.15
RPN3P40016 LSM3YLR438C-A 270 nt14.12□□□□□ -0.15
RPN3P40016 RKM5YLR137W 1104 nt14.1□□□□□ -0.15
RPN3P40016 PHO4YFR034C 939 nt14.09□□□□□ -0.15
RPN3P40016 YOL037CYOL037C 354 nt14.06□□□□□ -0.16
RPN3P40016 FUN26YAL022C 1554 nt13.97□□□□□ -0.17
RPN3P40016 TRM9YML014W 840 nt13.97□□□□□ -0.17
RPN3P40016 CCT6YDR188W 1641 nt13.82□□□□□ -0.2
RPN3P40016 YPS1YLR120C 1710 nt13.8□□□□□ -0.2
RPN3P40016 tM(CAU)CtM(CAU)C 72 nt13.75□□□□□ -0.21
RPN3P40016 IMT4tM(CAU)E 72 nt13.75□□□□□ -0.21
RPN3P40016 IMT3tM(CAU)J3 72 nt13.75□□□□□ -0.21
RPN3P40016 IMT1tM(CAU)O1 72 nt13.75□□□□□ -0.21
RPN3P40016 IMT2tM(CAU)P 72 nt13.75□□□□□ -0.21
RPN3P40016 ALF1YNL148C 765 nt13.75□□□□□ -0.21
RPN3P40016 YDR095CYDR095C 411 nt13.73□□□□□ -0.21
RPN3P40016 YLR281CYLR281C 468 nt13.73□□□□□ -0.21
RPN3P40016 SUF2tP(AGG)C 72 nt13.7□□□□□ -0.22
RPN3P40016 SUF10tP(AGG)N 72 nt13.7□□□□□ -0.22
RPN3P40016 SPT5YML010W 3192 nt13.68□□□□□ -0.22
RPN3P40016 WHI5YOR083W 888 nt13.66□□□□□ -0.22
RPN3P40016 PUS2YGL063W 1113 nt13.62□□□□□ -0.23
RPN3P40016 YHR165W-AYHR165W-A 312 nt13.62□□□□□ -0.23
RPN3P40016 YLR154C-GYLR154C-G 150 nt13.56□□□□□ -0.24
Retrieved 100 of 7,029 protein–RNA pairs in 14.1 ms