Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.98■■■■□ 3.35
RNF38Q9H0F5 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
RNF38Q9H0F5 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.97■■■■□ 3.19
RNF38Q9H0F5 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
RNF38Q9H0F5 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
RNF38Q9H0F5 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
RNF38Q9H0F5 AL356512.1-201ENST00000607453 1739 ntBASIC34.7■■■■□ 3.15
RNF38Q9H0F5 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.4■■■■□ 3.1
RNF38Q9H0F5 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.79■■■■□ 3
RNF38Q9H0F5 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.79■■■■□ 3
RNF38Q9H0F5 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.61■■■□□ 2.97
RNF38Q9H0F5 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.57■■■□□ 2.96
RNF38Q9H0F5 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.55■■■□□ 2.96
RNF38Q9H0F5 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.55■■■□□ 2.96
RNF38Q9H0F5 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.41■■■□□ 2.94
RNF38Q9H0F5 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.35■■■□□ 2.93
RNF38Q9H0F5 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.31■■■□□ 2.92
RNF38Q9H0F5 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC33.26■■■□□ 2.92
RNF38Q9H0F5 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
RNF38Q9H0F5 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
RNF38Q9H0F5 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.89■■■□□ 2.86
RNF38Q9H0F5 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
RNF38Q9H0F5 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.85■■■□□ 2.85
RNF38Q9H0F5 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
RNF38Q9H0F5 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
RNF38Q9H0F5 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
RNF38Q9H0F5 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
RNF38Q9H0F5 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
RNF38Q9H0F5 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.4■■■□□ 2.78
RNF38Q9H0F5 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.34■■■□□ 2.77
RNF38Q9H0F5 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
RNF38Q9H0F5 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
RNF38Q9H0F5 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
RNF38Q9H0F5 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.22■■■□□ 2.75
RNF38Q9H0F5 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC32.1■■■□□ 2.73
RNF38Q9H0F5 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.04■■■□□ 2.72
RNF38Q9H0F5 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
RNF38Q9H0F5 AC015813.7-201ENST00000623294 581 ntBASIC31.91■■■□□ 2.7
RNF38Q9H0F5 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RNF38Q9H0F5 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
RNF38Q9H0F5 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RNF38Q9H0F5 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.71■■■□□ 2.67
RNF38Q9H0F5 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.69■■■□□ 2.66
RNF38Q9H0F5 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.67■■■□□ 2.66
RNF38Q9H0F5 AC006077.2-201ENST00000623591 457 ntBASIC31.66■■■□□ 2.66
RNF38Q9H0F5 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.65■■■□□ 2.66
RNF38Q9H0F5 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
RNF38Q9H0F5 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
RNF38Q9H0F5 ZNRF2P1-201ENST00000441407 443 ntBASIC31.57■■■□□ 2.64
RNF38Q9H0F5 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.56■■■□□ 2.64
RNF38Q9H0F5 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.41■■■□□ 2.62
RNF38Q9H0F5 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.41■■■□□ 2.62
RNF38Q9H0F5 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
RNF38Q9H0F5 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
RNF38Q9H0F5 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
RNF38Q9H0F5 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RNF38Q9H0F5 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RNF38Q9H0F5 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
RNF38Q9H0F5 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.21■■■□□ 2.59
RNF38Q9H0F5 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
RNF38Q9H0F5 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
RNF38Q9H0F5 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
RNF38Q9H0F5 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
RNF38Q9H0F5 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC31■■■□□ 2.55
RNF38Q9H0F5 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
RNF38Q9H0F5 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
RNF38Q9H0F5 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.9■■■□□ 2.54
RNF38Q9H0F5 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
RNF38Q9H0F5 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
RNF38Q9H0F5 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
RNF38Q9H0F5 AP002365.1-201ENST00000603448 772 ntBASIC30.81■■■□□ 2.52
RNF38Q9H0F5 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
RNF38Q9H0F5 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.73■■■□□ 2.51
RNF38Q9H0F5 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.71■■■□□ 2.51
RNF38Q9H0F5 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
RNF38Q9H0F5 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.68■■■□□ 2.5
RNF38Q9H0F5 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.68■■■□□ 2.5
RNF38Q9H0F5 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RNF38Q9H0F5 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.66■■■□□ 2.5
RNF38Q9H0F5 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.64■■■□□ 2.5
RNF38Q9H0F5 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RNF38Q9H0F5 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.62■■■□□ 2.49
RNF38Q9H0F5 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RNF38Q9H0F5 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
RNF38Q9H0F5 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
RNF38Q9H0F5 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.55■■■□□ 2.48
RNF38Q9H0F5 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.54■■■□□ 2.48
RNF38Q9H0F5 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
RNF38Q9H0F5 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
RNF38Q9H0F5 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
RNF38Q9H0F5 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
RNF38Q9H0F5 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
RNF38Q9H0F5 DYNLL1-208ENST00000550178 581 ntBASIC30.47■■■□□ 2.47
RNF38Q9H0F5 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.46
RNF38Q9H0F5 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
RNF38Q9H0F5 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.42■■■□□ 2.46
RNF38Q9H0F5 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.41■■■□□ 2.46
RNF38Q9H0F5 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.4■■■□□ 2.46
RNF38Q9H0F5 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC30.4■■■□□ 2.46
RNF38Q9H0F5 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms