Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
LINC01006Q8NI28 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC26.84■■□□□ 1.89
LINC01006Q8NI28 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
LINC01006Q8NI28 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC26.43■■□□□ 1.82
LINC01006Q8NI28 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
LINC01006Q8NI28 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
LINC01006Q8NI28 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
LINC01006Q8NI28 AL356512.1-201ENST00000607453 1739 ntBASIC26.07■■□□□ 1.76
LINC01006Q8NI28 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
LINC01006Q8NI28 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC25.61■■□□□ 1.69
LINC01006Q8NI28 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC25.53■■□□□ 1.68
LINC01006Q8NI28 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC25.5■■□□□ 1.67
LINC01006Q8NI28 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC25.43■■□□□ 1.66
LINC01006Q8NI28 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC25.42■■□□□ 1.66
LINC01006Q8NI28 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
LINC01006Q8NI28 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
LINC01006Q8NI28 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
LINC01006Q8NI28 HES6-203ENST00000409160 1600 ntTSL 2 BASIC25.21■■□□□ 1.63
LINC01006Q8NI28 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
LINC01006Q8NI28 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC25■■□□□ 1.59
LINC01006Q8NI28 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
LINC01006Q8NI28 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
LINC01006Q8NI28 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
LINC01006Q8NI28 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
LINC01006Q8NI28 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
LINC01006Q8NI28 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC24.9■■□□□ 1.58
LINC01006Q8NI28 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC24.85■■□□□ 1.57
LINC01006Q8NI28 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
LINC01006Q8NI28 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
LINC01006Q8NI28 INO80B-203ENST00000409917 796 ntTSL 2 BASIC24.7■■□□□ 1.54
LINC01006Q8NI28 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
LINC01006Q8NI28 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
LINC01006Q8NI28 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
LINC01006Q8NI28 AC006077.2-201ENST00000623591 457 ntBASIC24.4■■□□□ 1.5
LINC01006Q8NI28 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC24.38■■□□□ 1.49
LINC01006Q8NI28 ZNRF2P1-201ENST00000441407 443 ntBASIC24.36■■□□□ 1.49
LINC01006Q8NI28 AC015813.7-201ENST00000623294 581 ntBASIC24.35■■□□□ 1.49
LINC01006Q8NI28 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC24.31■■□□□ 1.48
LINC01006Q8NI28 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC24.25■■□□□ 1.47
LINC01006Q8NI28 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
LINC01006Q8NI28 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC24.15■■□□□ 1.46
LINC01006Q8NI28 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LINC01006Q8NI28 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LINC01006Q8NI28 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
LINC01006Q8NI28 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
LINC01006Q8NI28 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
LINC01006Q8NI28 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
LINC01006Q8NI28 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
LINC01006Q8NI28 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
LINC01006Q8NI28 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC23.9■■□□□ 1.42
LINC01006Q8NI28 AP002365.1-201ENST00000603448 772 ntBASIC23.75■■□□□ 1.39
LINC01006Q8NI28 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
LINC01006Q8NI28 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LINC01006Q8NI28 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LINC01006Q8NI28 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC23.64■■□□□ 1.37
LINC01006Q8NI28 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LINC01006Q8NI28 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LINC01006Q8NI28 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
LINC01006Q8NI28 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC23.59■■□□□ 1.37
LINC01006Q8NI28 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LINC01006Q8NI28 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC23.56■■□□□ 1.36
LINC01006Q8NI28 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
LINC01006Q8NI28 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC23.52■■□□□ 1.36
LINC01006Q8NI28 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC23.51■■□□□ 1.35
LINC01006Q8NI28 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC23.5■■□□□ 1.35
LINC01006Q8NI28 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
LINC01006Q8NI28 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
LINC01006Q8NI28 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LINC01006Q8NI28 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LINC01006Q8NI28 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC23.46■■□□□ 1.35
LINC01006Q8NI28 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC23.45■■□□□ 1.35
LINC01006Q8NI28 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC23.45■■□□□ 1.34
LINC01006Q8NI28 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
LINC01006Q8NI28 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LINC01006Q8NI28 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC23.42■■□□□ 1.34
LINC01006Q8NI28 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
LINC01006Q8NI28 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LINC01006Q8NI28 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
LINC01006Q8NI28 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC23.36■■□□□ 1.33
LINC01006Q8NI28 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC23.35■■□□□ 1.33
LINC01006Q8NI28 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
LINC01006Q8NI28 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC23.32■■□□□ 1.32
LINC01006Q8NI28 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
LINC01006Q8NI28 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC23.31■■□□□ 1.32
LINC01006Q8NI28 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
LINC01006Q8NI28 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LINC01006Q8NI28 DYNLL1-208ENST00000550178 581 ntBASIC23.29■■□□□ 1.32
LINC01006Q8NI28 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LINC01006Q8NI28 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.26■■□□□ 1.31
LINC01006Q8NI28 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
LINC01006Q8NI28 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LINC01006Q8NI28 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
LINC01006Q8NI28 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC23.2■■□□□ 1.3
LINC01006Q8NI28 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
LINC01006Q8NI28 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
LINC01006Q8NI28 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LINC01006Q8NI28 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LINC01006Q8NI28 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LINC01006Q8NI28 AL031258.1-201ENST00000623562 325 ntBASIC23.11■■□□□ 1.29
LINC01006Q8NI28 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms