Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC36■■■■□ 3.35
SCUBE3Q8IX30 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SCUBE3Q8IX30 AL356512.1-201ENST00000607453 1739 ntBASIC35.07■■■■□ 3.2
SCUBE3Q8IX30 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC35.04■■■■□ 3.2
SCUBE3Q8IX30 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SCUBE3Q8IX30 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
SCUBE3Q8IX30 HES6-203ENST00000409160 1600 ntTSL 2 BASIC34.51■■■■□ 3.11
SCUBE3Q8IX30 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.47■■■■□ 3.11
SCUBE3Q8IX30 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC34.24■■■■□ 3.07
SCUBE3Q8IX30 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC34.1■■■■□ 3.05
SCUBE3Q8IX30 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.07■■■■□ 3.04
SCUBE3Q8IX30 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.94■■■■□ 3.02
SCUBE3Q8IX30 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.8■■■■□ 3
SCUBE3Q8IX30 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.64■■■□□ 2.98
SCUBE3Q8IX30 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
SCUBE3Q8IX30 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.34■■■□□ 2.93
SCUBE3Q8IX30 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.2■■■□□ 2.91
SCUBE3Q8IX30 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC33.15■■■□□ 2.9
SCUBE3Q8IX30 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.12■■■□□ 2.89
SCUBE3Q8IX30 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.99■■■□□ 2.87
SCUBE3Q8IX30 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.93■■■□□ 2.86
SCUBE3Q8IX30 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.91■■■□□ 2.86
SCUBE3Q8IX30 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.89■■■□□ 2.86
SCUBE3Q8IX30 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.72■■■□□ 2.83
SCUBE3Q8IX30 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
SCUBE3Q8IX30 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SCUBE3Q8IX30 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
SCUBE3Q8IX30 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.59■■■□□ 2.81
SCUBE3Q8IX30 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
SCUBE3Q8IX30 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
SCUBE3Q8IX30 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SCUBE3Q8IX30 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC32.22■■■□□ 2.75
SCUBE3Q8IX30 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC32.18■■■□□ 2.74
SCUBE3Q8IX30 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
SCUBE3Q8IX30 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.16■■■□□ 2.74
SCUBE3Q8IX30 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SCUBE3Q8IX30 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SCUBE3Q8IX30 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
SCUBE3Q8IX30 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.12■■■□□ 2.73
SCUBE3Q8IX30 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SCUBE3Q8IX30 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
SCUBE3Q8IX30 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC32.04■■■□□ 2.72
SCUBE3Q8IX30 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SCUBE3Q8IX30 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.97■■■□□ 2.71
SCUBE3Q8IX30 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.94■■■□□ 2.7
SCUBE3Q8IX30 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SCUBE3Q8IX30 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
SCUBE3Q8IX30 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.73■■■□□ 2.67
SCUBE3Q8IX30 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SCUBE3Q8IX30 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.69■■■□□ 2.66
SCUBE3Q8IX30 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
SCUBE3Q8IX30 AC015813.7-201ENST00000623294 581 ntBASIC31.58■■■□□ 2.65
SCUBE3Q8IX30 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
SCUBE3Q8IX30 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SCUBE3Q8IX30 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SCUBE3Q8IX30 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
SCUBE3Q8IX30 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SCUBE3Q8IX30 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.3■■■□□ 2.6
SCUBE3Q8IX30 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
SCUBE3Q8IX30 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.27■■■□□ 2.6
SCUBE3Q8IX30 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SCUBE3Q8IX30 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.22■■■□□ 2.59
SCUBE3Q8IX30 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
SCUBE3Q8IX30 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.17■■■□□ 2.58
SCUBE3Q8IX30 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SCUBE3Q8IX30 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SCUBE3Q8IX30 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
SCUBE3Q8IX30 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SCUBE3Q8IX30 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SCUBE3Q8IX30 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.56
SCUBE3Q8IX30 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
SCUBE3Q8IX30 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
SCUBE3Q8IX30 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SCUBE3Q8IX30 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SCUBE3Q8IX30 AC006077.2-201ENST00000623591 457 ntBASIC31.02■■■□□ 2.56
SCUBE3Q8IX30 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SCUBE3Q8IX30 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SCUBE3Q8IX30 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.95■■■□□ 2.55
SCUBE3Q8IX30 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.9■■■□□ 2.54
SCUBE3Q8IX30 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
SCUBE3Q8IX30 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.89■■■□□ 2.54
SCUBE3Q8IX30 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SCUBE3Q8IX30 ZNRF2P1-201ENST00000441407 443 ntBASIC30.85■■■□□ 2.53
SCUBE3Q8IX30 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SCUBE3Q8IX30 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SCUBE3Q8IX30 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SCUBE3Q8IX30 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
SCUBE3Q8IX30 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SCUBE3Q8IX30 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
SCUBE3Q8IX30 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
SCUBE3Q8IX30 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.61■■■□□ 2.49
SCUBE3Q8IX30 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
SCUBE3Q8IX30 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SCUBE3Q8IX30 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SCUBE3Q8IX30 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SCUBE3Q8IX30 AC145285.7-201ENST00000614819 1539 ntBASIC30.52■■■□□ 2.48
SCUBE3Q8IX30 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
SCUBE3Q8IX30 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.48■■■□□ 2.47
SCUBE3Q8IX30 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.48■■■□□ 2.47
SCUBE3Q8IX30 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.48■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms