Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.39■■■■□ 3.26
RNF43Q68DV7 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
RNF43Q68DV7 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.39■■■■□ 3.1
RNF43Q68DV7 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
RNF43Q68DV7 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.24■■■■□ 3.07
RNF43Q68DV7 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
RNF43Q68DV7 AL356512.1-201ENST00000607453 1739 ntBASIC34.18■■■■□ 3.06
RNF43Q68DV7 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.74■■■□□ 2.99
RNF43Q68DV7 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC33.67■■■□□ 2.98
RNF43Q68DV7 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.46■■■□□ 2.95
RNF43Q68DV7 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.27■■■□□ 2.92
RNF43Q68DV7 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC33.2■■■□□ 2.91
RNF43Q68DV7 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.16■■■□□ 2.9
RNF43Q68DV7 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.01■■■□□ 2.87
RNF43Q68DV7 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.99■■■□□ 2.87
RNF43Q68DV7 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.94■■■□□ 2.86
RNF43Q68DV7 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.87■■■□□ 2.85
RNF43Q68DV7 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.82■■■□□ 2.84
RNF43Q68DV7 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
RNF43Q68DV7 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.68■■■□□ 2.82
RNF43Q68DV7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
RNF43Q68DV7 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.67■■■□□ 2.82
RNF43Q68DV7 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
RNF43Q68DV7 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.58■■■□□ 2.81
RNF43Q68DV7 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
RNF43Q68DV7 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.45■■■□□ 2.78
RNF43Q68DV7 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
RNF43Q68DV7 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
RNF43Q68DV7 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
RNF43Q68DV7 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
RNF43Q68DV7 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
RNF43Q68DV7 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
RNF43Q68DV7 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.91■■■□□ 2.7
RNF43Q68DV7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
RNF43Q68DV7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
RNF43Q68DV7 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.83■■■□□ 2.69
RNF43Q68DV7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RNF43Q68DV7 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
RNF43Q68DV7 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
RNF43Q68DV7 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.7■■■□□ 2.67
RNF43Q68DV7 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
RNF43Q68DV7 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
RNF43Q68DV7 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
RNF43Q68DV7 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.64■■■□□ 2.66
RNF43Q68DV7 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
RNF43Q68DV7 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RNF43Q68DV7 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
RNF43Q68DV7 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.53■■■□□ 2.64
RNF43Q68DV7 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.53■■■□□ 2.64
RNF43Q68DV7 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
RNF43Q68DV7 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
RNF43Q68DV7 AC015813.7-201ENST00000623294 581 ntBASIC31.3■■■□□ 2.6
RNF43Q68DV7 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
RNF43Q68DV7 ZNRF2P1-201ENST00000441407 443 ntBASIC31.22■■■□□ 2.59
RNF43Q68DV7 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
RNF43Q68DV7 AC006077.2-201ENST00000623591 457 ntBASIC31.18■■■□□ 2.58
RNF43Q68DV7 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
RNF43Q68DV7 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.11■■■□□ 2.57
RNF43Q68DV7 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.08■■■□□ 2.57
RNF43Q68DV7 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.03■■■□□ 2.56
RNF43Q68DV7 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.02■■■□□ 2.56
RNF43Q68DV7 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31■■■□□ 2.55
RNF43Q68DV7 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
RNF43Q68DV7 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
RNF43Q68DV7 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
RNF43Q68DV7 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
RNF43Q68DV7 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.81■■■□□ 2.52
RNF43Q68DV7 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.81■■■□□ 2.52
RNF43Q68DV7 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
RNF43Q68DV7 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
RNF43Q68DV7 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.69■■■□□ 2.5
RNF43Q68DV7 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.66■■■□□ 2.5
RNF43Q68DV7 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RNF43Q68DV7 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
RNF43Q68DV7 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
RNF43Q68DV7 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
RNF43Q68DV7 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RNF43Q68DV7 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
RNF43Q68DV7 AP002365.1-201ENST00000603448 772 ntBASIC30.43■■■□□ 2.46
RNF43Q68DV7 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
RNF43Q68DV7 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
RNF43Q68DV7 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
RNF43Q68DV7 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
RNF43Q68DV7 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.34■■■□□ 2.45
RNF43Q68DV7 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
RNF43Q68DV7 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.3■■■□□ 2.44
RNF43Q68DV7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
RNF43Q68DV7 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
RNF43Q68DV7 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
RNF43Q68DV7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.24■■■□□ 2.43
RNF43Q68DV7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
RNF43Q68DV7 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
RNF43Q68DV7 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
RNF43Q68DV7 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.22■■■□□ 2.43
RNF43Q68DV7 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RNF43Q68DV7 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
RNF43Q68DV7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.15■■■□□ 2.42
RNF43Q68DV7 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.14■■■□□ 2.42
RNF43Q68DV7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.13■■■□□ 2.41
RNF43Q68DV7 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms