Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC37.63■■■■□ 3.61
TTC3P53804 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC37.13■■■■□ 3.53
TTC3P53804 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC36.7■■■■□ 3.47
TTC3P53804 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC36.65■■■■□ 3.46
TTC3P53804 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
TTC3P53804 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC36.3■■■■□ 3.4
TTC3P53804 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
TTC3P53804 AL356512.1-201ENST00000607453 1739 ntBASIC36.07■■■■□ 3.36
TTC3P53804 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC35.59■■■■□ 3.29
TTC3P53804 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC35.41■■■■□ 3.26
TTC3P53804 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC35.35■■■■□ 3.25
TTC3P53804 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35.32■■■■□ 3.24
TTC3P53804 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC35.23■■■■□ 3.23
TTC3P53804 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC35.22■■■■□ 3.23
TTC3P53804 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC35.21■■■■□ 3.23
TTC3P53804 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
TTC3P53804 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC34.97■■■■□ 3.19
TTC3P53804 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
TTC3P53804 HES6-203ENST00000409160 1600 ntTSL 2 BASIC34.87■■■■□ 3.17
TTC3P53804 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
TTC3P53804 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC34.6■■■■□ 3.13
TTC3P53804 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
TTC3P53804 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC34.49■■■■□ 3.11
TTC3P53804 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
TTC3P53804 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
TTC3P53804 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC34.39■■■■□ 3.1
TTC3P53804 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
TTC3P53804 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC34.28■■■■□ 3.08
TTC3P53804 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC34.16■■■■□ 3.06
TTC3P53804 INO80B-203ENST00000409917 796 ntTSL 2 BASIC34.13■■■■□ 3.05
TTC3P53804 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
TTC3P53804 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC34.01■■■■□ 3.04
TTC3P53804 AC006077.2-201ENST00000623591 457 ntBASIC33.85■■■■□ 3.01
TTC3P53804 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
TTC3P53804 ZNRF2P1-201ENST00000441407 443 ntBASIC33.74■■■□□ 2.99
TTC3P53804 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC33.72■■■□□ 2.99
TTC3P53804 AC015813.7-201ENST00000623294 581 ntBASIC33.72■■■□□ 2.99
TTC3P53804 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC33.66■■■□□ 2.98
TTC3P53804 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC33.59■■■□□ 2.97
TTC3P53804 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
TTC3P53804 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.93
TTC3P53804 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC33.36■■■□□ 2.93
TTC3P53804 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.35■■■□□ 2.93
TTC3P53804 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC33.3■■■□□ 2.92
TTC3P53804 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
TTC3P53804 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
TTC3P53804 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC33.23■■■□□ 2.91
TTC3P53804 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
TTC3P53804 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
TTC3P53804 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC33.02■■■□□ 2.88
TTC3P53804 AP002365.1-201ENST00000603448 772 ntBASIC33.02■■■□□ 2.88
TTC3P53804 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC32.81■■■□□ 2.84
TTC3P53804 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC32.75■■■□□ 2.83
TTC3P53804 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC32.7■■■□□ 2.82
TTC3P53804 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
TTC3P53804 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
TTC3P53804 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC32.67■■■□□ 2.82
TTC3P53804 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
TTC3P53804 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
TTC3P53804 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
TTC3P53804 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC32.6■■■□□ 2.81
TTC3P53804 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC32.58■■■□□ 2.81
TTC3P53804 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
TTC3P53804 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
TTC3P53804 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC32.57■■■□□ 2.8
TTC3P53804 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
TTC3P53804 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC32.53■■■□□ 2.8
TTC3P53804 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC32.51■■■□□ 2.8
TTC3P53804 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.51■■■□□ 2.79
TTC3P53804 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
TTC3P53804 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
TTC3P53804 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC32.47■■■□□ 2.79
TTC3P53804 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.39■■■□□ 2.78
TTC3P53804 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC32.37■■■□□ 2.77
TTC3P53804 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.36■■■□□ 2.77
TTC3P53804 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC32.35■■■□□ 2.77
TTC3P53804 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
TTC3P53804 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
TTC3P53804 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC32.3■■■□□ 2.76
TTC3P53804 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.29■■■□□ 2.76
TTC3P53804 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.28■■■□□ 2.76
TTC3P53804 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.27■■■□□ 2.76
TTC3P53804 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.27■■■□□ 2.76
TTC3P53804 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC32.25■■■□□ 2.75
TTC3P53804 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC32.25■■■□□ 2.75
TTC3P53804 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC32.24■■■□□ 2.75
TTC3P53804 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
TTC3P53804 DYNLL1-208ENST00000550178 581 ntBASIC32.23■■■□□ 2.75
TTC3P53804 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
TTC3P53804 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.19■■■□□ 2.74
TTC3P53804 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
TTC3P53804 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
TTC3P53804 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
TTC3P53804 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.07■■■□□ 2.72
TTC3P53804 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
TTC3P53804 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
TTC3P53804 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.95■■■□□ 2.7
TTC3P53804 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
TTC3P53804 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
TTC3P53804 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.9■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms