Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC9.96□□□□□ -0.813e-6■□□□□ 8.5
U2AF1Q01081 CELF1-206ENST00000422993 553 ntTSL 56.23□□□□□ -1.413e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-207ENST00000414664 1070 ntTSL 533.83■■■■□ 3.012e-6■□□□□ 8.5
U2AF1Q01081 RBM12-204ENST00000424458 1068 ntTSL 233.83■■■■□ 3.012e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-212ENST00000430570 1332 ntTSL 533.65■■■□□ 2.982e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-217ENST00000439669 784 ntTSL 532.16■■■□□ 2.742e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-223ENST00000475146 627 ntTSL 332.16■■■□□ 2.742e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.292e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-220ENST00000458038 596 ntTSL 328.75■■■□□ 2.192e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-211ENST00000420363 821 ntTSL 228.56■■■□□ 2.162e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-210ENST00000590107 1616 ntTSL 528.39■■■□□ 2.132e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-219ENST00000440240 746 ntTSL 527.74■■■□□ 2.032e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-202ENST00000383376 1575 ntTSL 1 (best)27.38■■□□□ 1.972e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-205ENST00000588752 651 ntTSL 327.22■■□□□ 1.952e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-211ENST00000590138 895 ntTSL 526.71■■□□□ 1.872e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC26.06■■□□□ 1.762e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-210ENST00000416778 744 ntTSL 223.94■■□□□ 1.422e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-213ENST00000434795 831 ntTSL 323.94■■□□□ 1.422e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-204ENST00000588167 885 ntTSL 223.8■■□□□ 1.42e-6■□□□□ 8.5
U2AF1Q01081 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.71■■□□□ 1.072e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-208ENST00000414711 673 ntTSL 520.87■□□□□ 0.932e-6■□□□□ 8.5
U2AF1Q01081 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.832e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-215ENST00000437100 826 ntTSL 519.75■□□□□ 0.752e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-203ENST00000586230 563 ntTSL 219.36■□□□□ 0.692e-6■□□□□ 8.5
U2AF1Q01081 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC19.01■□□□□ 0.632e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-206ENST00000412056 998 ntTSL 318.67■□□□□ 0.582e-6■□□□□ 8.5
U2AF1Q01081 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC17.73■□□□□ 0.432e-6■□□□□ 8.5
U2AF1Q01081 SRP54-AS1-202ENST00000555015 561 ntTSL 317.22■□□□□ 0.352e-6■□□□□ 8.5
U2AF1Q01081 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.262e-6■□□□□ 8.5
U2AF1Q01081 RBM12-206ENST00000435161 565 ntTSL 416.11■□□□□ 0.172e-6■□□□□ 8.5
U2AF1Q01081 RBM12-205ENST00000431148 583 ntTSL 415.42■□□□□ 0.062e-6■□□□□ 8.5
U2AF1Q01081 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC15.19■□□□□ 0.022e-6■□□□□ 8.5
U2AF1Q01081 RBM12-202ENST00000374104 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 02e-6■□□□□ 8.5
U2AF1Q01081 SRP54-AS1-205ENST00000636540 565 ntBASIC14.86□□□□□ -0.032e-6■□□□□ 8.5
U2AF1Q01081 TBX3-203ENST00000548503 494 ntTSL 214.07□□□□□ -0.162e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-214ENST00000435747 400 ntTSL 313.71□□□□□ -0.212e-6■□□□□ 8.5
U2AF1Q01081 CPNE1-218ENST00000439806 748 ntTSL 513.58□□□□□ -0.242e-6■□□□□ 8.5
U2AF1Q01081 AL109827.1-202ENST00000441563 611 ntAPPRIS ALT2 TSL 213.43□□□□□ -0.262e-6■□□□□ 8.5
U2AF1Q01081 AL109827.1-201ENST00000454607 679 ntAPPRIS ALT2 TSL 213.43□□□□□ -0.262e-6■□□□□ 8.5
U2AF1Q01081 SRP54-AS1-201ENST00000554945 600 ntTSL 312.54□□□□□ -0.42e-6■□□□□ 8.5
U2AF1Q01081 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.562e-6■□□□□ 8.5
U2AF1Q01081 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.77□□□□□ -1.492e-6■□□□□ 8.5
U2AF1Q01081 ACTB-211ENST00000480301 657 ntTSL 1 (best)28.06■■■□□ 2.083e-42■□□□□ 8.5
U2AF1Q01081 ACTB-212ENST00000484841 1032 ntTSL 526.94■■□□□ 1.93e-42■□□□□ 8.5
U2AF1Q01081 ACTB-210ENST00000477812 820 ntTSL 226.66■■□□□ 1.863e-42■□□□□ 8.5
U2AF1Q01081 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.373e-42■□□□□ 8.5
U2AF1Q01081 ACTB-207ENST00000462494 2245 ntTSL 521.9■■□□□ 1.13e-42■□□□□ 8.5
U2AF1Q01081 ACTB-205ENST00000432588 568 ntTSL 421.64■■□□□ 1.053e-42■□□□□ 8.5
U2AF1Q01081 ACTB-206ENST00000443528 569 ntTSL 421.05■□□□□ 0.963e-42■□□□□ 8.5
U2AF1Q01081 ACTB-202ENST00000414620 561 ntTSL 420.82■□□□□ 0.923e-42■□□□□ 8.5
U2AF1Q01081 ACTB-204ENST00000425660 1845 ntTSL 1 (best)20.09■□□□□ 0.813e-42■□□□□ 8.5
U2AF1Q01081 ACTB-209ENST00000473257 556 ntTSL 315.04■□□□□ -03e-42■□□□□ 8.5
U2AF1Q01081 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC30.64■■■□□ 2.58e-8■□□□□ 8.5
U2AF1Q01081 TMEM165-205ENST00000508404 1657 ntTSL 228.35■■■□□ 2.138e-8■□□□□ 8.5
U2AF1Q01081 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.138e-8■□□□□ 8.5
U2AF1Q01081 TMEM165-206ENST00000508561 756 ntTSL 518.19■□□□□ 0.58e-8■□□□□ 8.5
U2AF1Q01081 TMEM165-210ENST00000514904 1522 ntTSL 211.03□□□□□ -0.648e-8■□□□□ 8.5
U2AF1Q01081 TMEM165-208ENST00000511710 731 ntTSL 39.88□□□□□ -0.838e-8■□□□□ 8.5
U2AF1Q01081 SARS-206ENST00000482384 804 ntTSL 213.64□□□□□ -0.234e-9■□□□□ 8.5
U2AF1Q01081 PHYHIPL-204ENST00000486074 1971 ntTSL 212.07□□□□□ -0.483e-8■□□□□ 8.5
U2AF1Q01081 PHYHIPL-202ENST00000373880 3578 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.713e-8■□□□□ 8.5
U2AF1Q01081 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC8.52□□□□□ -1.053e-8■□□□□ 8.5
U2AF1Q01081 RALGAPA1-215ENST00000556839 1305 ntTSL 35.99□□□□□ -1.454e-6■□□□□ 8.5
U2AF1Q01081 RALGAPA1-205ENST00000553917 723 ntTSL 34.11□□□□□ -1.754e-6■□□□□ 8.5
U2AF1Q01081 HSPA8-208ENST00000526686 740 ntTSL 1 (best)4.71□□□□□ -1.661e-9■□□□□ 8.5
U2AF1Q01081 HMGN2-205ENST00000466194 952 ntTSL 224.25■■□□□ 1.472e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-202ENST00000460563 1045 ntTSL 514.46□□□□□ -0.092e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-204ENST00000464888 565 ntTSL 214.2□□□□□ -0.142e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-203ENST00000463817 853 ntTSL 211.52□□□□□ -0.572e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-208ENST00000479815 1030 ntTSL 511.52□□□□□ -0.572e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-206ENST00000467700 932 ntTSL 29.9□□□□□ -0.822e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.922e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-207ENST00000468388 320 ntTSL 39.28□□□□□ -0.922e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-209ENST00000493418 1496 ntTSL 28.54□□□□□ -1.042e-23■□□□□ 8.5
U2AF1Q01081 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.282e-23■□□□□ 8.5
U2AF1Q01081 RHBG-208ENST00000620376 1984 ntTSL 228.82■■■□□ 2.26e-15■□□□□ 8.5
U2AF1Q01081 RHBG-201ENST00000451864 1927 ntTSL 228.31■■■□□ 2.126e-15■□□□□ 8.5
U2AF1Q01081 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.166e-15■□□□□ 8.5
U2AF1Q01081 RHBG-205ENST00000612897 1862 ntTSL 1 (best)21.69■■□□□ 1.066e-15■□□□□ 8.5
U2AF1Q01081 RHBG-206ENST00000613460 1912 ntTSL 1 (best)18.86■□□□□ 0.616e-15■□□□□ 8.5
U2AF1Q01081 RHBG-209ENST00000622297 720 ntTSL 518.43■□□□□ 0.546e-15■□□□□ 8.5
U2AF1Q01081 RHBG-207ENST00000618120 2424 ntTSL 217.47■□□□□ 0.396e-15■□□□□ 8.5
U2AF1Q01081 RHBG-203ENST00000494874 324 ntTSL 313.38□□□□□ -0.276e-15■□□□□ 8.5
U2AF1Q01081 MED13L-207ENST00000551197 489 ntTSL 57.44□□□□□ -1.224e-6■□□□□ 8.4
U2AF1Q01081 TRIM25-208ENST00000574234 471 ntTSL 26.61□□□□□ -1.351e-11■□□□□ 8.4
U2AF1Q01081 MARCH6-214ENST00000606497 1334 ntTSL 46.5□□□□□ -1.376e-8■□□□□ 8.4
U2AF1Q01081 PRRC2A-206ENST00000464890 593 ntTSL 220■□□□□ 0.793e-21■□□□□ 8.4
U2AF1Q01081 PRRC2A-208ENST00000469577 918 ntTSL 519.55■□□□□ 0.723e-21■□□□□ 8.4
U2AF1Q01081 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.91e-6■□□□□ 8.4
U2AF1Q01081 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.621e-6■□□□□ 8.4
U2AF1Q01081 SRRM2-217ENST00000573692 459 ntTSL 323.22■■□□□ 1.311e-10■□□□□ 8.4
U2AF1Q01081 SUPT5H-218ENST00000600818 718 ntTSL 218.14■□□□□ 0.491e-8■□□□□ 8.4
U2AF1Q01081 HNRNPH3-207ENST00000480987 752 ntTSL 416.77■□□□□ 0.281e-8■□□□□ 8.4
U2AF1Q01081 SUPT5H-203ENST00000402194 3698 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.021e-8■□□□□ 8.4
U2AF1Q01081 SUPT5H-204ENST00000432763 3710 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.031e-8■□□□□ 8.4
U2AF1Q01081 SUPT5H-201ENST00000359191 3770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.051e-8■□□□□ 8.4
U2AF1Q01081 SUPT5H-215ENST00000599117 3902 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.081e-8■□□□□ 8.4
U2AF1Q01081 SUPT5H-213ENST00000598725 3742 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.281e-8■□□□□ 8.4
U2AF1Q01081 HNRNPH3-203ENST00000461310 648 ntTSL 511.04□□□□□ -0.641e-8■□□□□ 8.4
U2AF1Q01081 HNRNPK-207ENST00000472778 822 ntTSL 38.56□□□□□ -1.044e-16■□□□□ 8.4
Retrieved 100 of 10,096 protein–RNA pairs in 39.7 ms