Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SHMT2-221ENST00000555773 600 ntTSL 214.71□□□□□ -0.058e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-209ENST00000553949 552 ntTSL 314.54□□□□□ -0.088e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-229ENST00000557348 1659 ntTSL 214.05□□□□□ -0.168e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-216ENST00000554975 780 ntTSL 313.65□□□□□ -0.228e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-215ENST00000554656 817 ntTSL 313.25□□□□□ -0.298e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-220ENST00000555634 964 ntTSL 513.06□□□□□ -0.328e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-213ENST00000554600 837 ntTSL 213□□□□□ -0.338e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-224ENST00000556737 572 ntTSL 212.73□□□□□ -0.378e-7■■□□□ 11.7
DDX55Q8NHQ9 LAMA5-211ENST00000492698 894 ntTSL 316.29■□□□□ 0.22e-15■■□□□ 11.6
DDX55Q8NHQ9 APRT-203ENST00000562464 515 ntTSL 323.87■■□□□ 1.413e-24■■□□□ 11.6
DDX55Q8NHQ9 APRT-211ENST00000569616 788 ntTSL 520.67■□□□□ 0.93e-24■■□□□ 11.6
DDX55Q8NHQ9 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.82■□□□□ 0.63e-24■■□□□ 11.6
DDX55Q8NHQ9 APRT-207ENST00000567391 667 ntTSL 317.76■□□□□ 0.433e-24■■□□□ 11.6
DDX55Q8NHQ9 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.433e-24■■□□□ 11.6
DDX55Q8NHQ9 APRT-209ENST00000568319 542 ntTSL 315.85■□□□□ 0.133e-24■■□□□ 11.6
DDX55Q8NHQ9 APRT-202ENST00000426324 664 ntTSL 2 BASIC15.05■□□□□ -03e-24■■□□□ 11.6
DDX55Q8NHQ9 APRT-208ENST00000567713 470 ntTSL 514.04□□□□□ -0.163e-24■■□□□ 11.6
DDX55Q8NHQ9 SYVN1-212ENST00000530451 656 ntTSL 523.88■■□□□ 1.418e-17■■□□□ 11.6
DDX55Q8NHQ9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.568e-17■■□□□ 11.6
DDX55Q8NHQ9 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.85■□□□□ 0.458e-17■■□□□ 11.6
DDX55Q8NHQ9 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.55■□□□□ 0.48e-17■■□□□ 11.6
DDX55Q8NHQ9 SYVN1-204ENST00000449943 4547 ntTSL 211.66□□□□□ -0.548e-17■■□□□ 11.6
DDX55Q8NHQ9 SYVN1-206ENST00000526060 3144 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.558e-17■■□□□ 11.6
DDX55Q8NHQ9 TUBB4B-202ENST00000604929 2035 ntTSL 1 (best)21.67■■□□□ 1.066e-16■■□□□ 11.6
DDX55Q8NHQ9 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.396e-16■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-221ENST00000566946 2162 ntTSL 1 (best)22.91■■□□□ 1.262e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-213ENST00000564162 770 ntTSL 521.94■■□□□ 1.12e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-222ENST00000567024 525 ntTSL 321.23■□□□□ 0.991e-17■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-208ENST00000562583 1933 ntTSL 1 (best)21.06■□□□□ 0.962e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.162e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-211ENST00000563314 4574 ntTSL 515.92■□□□□ 0.142e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-218ENST00000565971 3264 ntTSL 1 (best)15.75■□□□□ 0.112e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.062e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.162e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.182e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.232e-10■■□□□ 11.6
DDX55Q8NHQ9 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.272e-10■■□□□ 11.6
DDX55Q8NHQ9 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.178e-8■■□□□ 11.6
DDX55Q8NHQ9 CYBA-206ENST00000566229 405 ntTSL 316.85■□□□□ 0.292e-13■■□□□ 11.6
DDX55Q8NHQ9 RPS6-204ENST00000380394 1387 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.722e-21■■□□□ 11.6
DDX55Q8NHQ9 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.725e-7■■□□□ 11.6
DDX55Q8NHQ9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.615e-8■■□□□ 11.6
DDX55Q8NHQ9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.434e-12■■□□□ 11.6
DDX55Q8NHQ9 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.315e-8■■□□□ 11.6
DDX55Q8NHQ9 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC22.24■■□□□ 1.155e-8■■□□□ 11.6
DDX55Q8NHQ9 PKDCC-208ENST00000490302 1447 ntTSL 221.94■■□□□ 1.15e-7■■□□□ 11.6
DDX55Q8NHQ9 FOXK2-202ENST00000473637 3462 ntTSL 1 (best)21.73■■□□□ 1.075e-8■■□□□ 11.6
DDX55Q8NHQ9 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.61■■□□□ 1.055e-8■■□□□ 11.6
DDX55Q8NHQ9 B4GALNT4-203ENST00000526584 421 ntTSL 321.25■□□□□ 0.995e-8■■□□□ 11.6
DDX55Q8NHQ9 B4GALNT4-205ENST00000534778 876 ntTSL 320.62■□□□□ 0.895e-8■■□□□ 11.6
DDX55Q8NHQ9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.885e-8■■□□□ 11.6
DDX55Q8NHQ9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.884e-6■■□□□ 11.6
DDX55Q8NHQ9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.828e-12■■□□□ 11.6
DDX55Q8NHQ9 RHOT2-212ENST00000564659 854 ntTSL 220.1■□□□□ 0.818e-12■■□□□ 11.6
DDX55Q8NHQ9 PKDCC-203ENST00000470578 765 ntTSL 319.83■□□□□ 0.775e-7■■□□□ 11.6
DDX55Q8NHQ9 RHOT2-222ENST00000569675 2559 ntTSL 219.3■□□□□ 0.688e-12■■□□□ 11.6
DDX55Q8NHQ9 PKDCC-206ENST00000480099 787 ntTSL 519.29■□□□□ 0.685e-7■■□□□ 11.6
DDX55Q8NHQ9 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.65e-8■■□□□ 11.6
DDX55Q8NHQ9 FOXK2-205ENST00000529652 2199 ntTSL 217.73■□□□□ 0.435e-8■■□□□ 11.6
DDX55Q8NHQ9 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.435e-8■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.375e-8■■□□□ 11.6
DDX55Q8NHQ9 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.345e-8■■□□□ 11.6
DDX55Q8NHQ9 RHOT2-218ENST00000568636 3098 ntTSL 216.93■□□□□ 0.38e-12■■□□□ 11.6
DDX55Q8NHQ9 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.87■□□□□ 0.294e-12■■□□□ 11.6
DDX55Q8NHQ9 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.158e-12■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.43■□□□□ 0.065e-8■■□□□ 11.6
DDX55Q8NHQ9 RHOT2-220ENST00000569197 530 ntTSL 515.29■□□□□ 0.048e-12■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.045e-8■■□□□ 11.6
DDX55Q8NHQ9 LEMD2-207ENST00000508327 1306 ntTSL 2 BASIC14.85□□□□□ -0.035e-8■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-208ENST00000519657 1005 ntTSL 214.67□□□□□ -0.065e-8■■□□□ 11.6
DDX55Q8NHQ9 ALDOC-202ENST00000395319 1519 ntTSL 5 BASIC14.56□□□□□ -0.084e-6■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-211ENST00000520916 2669 ntTSL 214.41□□□□□ -0.15e-8■■□□□ 11.6
DDX55Q8NHQ9 ARHGAP17-209ENST00000571843 1292 ntTSL 1 (best)14.39□□□□□ -0.115e-8■■□□□ 11.6
DDX55Q8NHQ9 ARHGAP17-215ENST00000575283 2213 ntTSL 214.29□□□□□ -0.125e-8■■□□□ 11.6
DDX55Q8NHQ9 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.215e-12■■□□□ 11.6
DDX55Q8NHQ9 CD99-209ENST00000497752 806 ntTSL 213.5□□□□□ -0.255e-8■■□□□ 11.6
DDX55Q8NHQ9 ALDOC-203ENST00000395321 1722 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.264e-6■■□□□ 11.6
DDX55Q8NHQ9 H6PD-202ENST00000495451 2701 ntTSL 213.36□□□□□ -0.275e-8■■□□□ 11.6
DDX55Q8NHQ9 FOXK2-212ENST00000624186 4244 nt13.14□□□□□ -0.315e-8■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-218ENST00000523104 453 ntTSL 313.03□□□□□ -0.325e-8■■□□□ 11.6
DDX55Q8NHQ9 ARHGAP17-213ENST00000573703 1616 nt12.99□□□□□ -0.335e-8■■□□□ 11.6
DDX55Q8NHQ9 ARHGAP17-206ENST00000571406 1135 ntTSL 312.79□□□□□ -0.365e-8■■□□□ 11.6
DDX55Q8NHQ9 ARHGAP17-202ENST00000303665 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.435e-8■■□□□ 11.6
DDX55Q8NHQ9 COL4A5-201ENST00000328300 6483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.455e-8■■□□□ 11.6
DDX55Q8NHQ9 COL4A5-202ENST00000361603 6469 ntAPPRIS P3 TSL 2 BASIC12.21□□□□□ -0.455e-8■■□□□ 11.6
DDX55Q8NHQ9 ARHGAP17-201ENST00000289968 3461 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.465e-8■■□□□ 11.6
DDX55Q8NHQ9 DCAF11-227ENST00000560046 686 ntTSL 311.66□□□□□ -0.545e-8■■□□□ 11.6
DDX55Q8NHQ9 ANKRD46-206ENST00000520552 1686 ntTSL 1 (best) BASIC11.2□□□□□ -0.628e-12■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-206ENST00000519359 839 ntTSL 59.64□□□□□ -0.875e-8■■□□□ 11.6
DDX55Q8NHQ9 EIF2AK1-209ENST00000490523 905 ntTSL 29.48□□□□□ -0.899e-12■■□□□ 11.6
DDX55Q8NHQ9 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.965e-8■■□□□ 11.6
DDX55Q8NHQ9 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC8.85□□□□□ -0.991e-6■■□□□ 11.6
DDX55Q8NHQ9 ARHGAP17-214ENST00000573765 1467 ntTSL 28.7□□□□□ -1.025e-8■■□□□ 11.6
DDX55Q8NHQ9 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.031e-6■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-213ENST00000521370 645 ntTSL 38.6□□□□□ -1.035e-8■■□□□ 11.6
DDX55Q8NHQ9 AKR1C1-205ENST00000477661 2637 ntTSL 58.22□□□□□ -1.095e-8■■□□□ 11.6
DDX55Q8NHQ9 TNRC6A-207ENST00000491718 7956 ntTSL 1 (best)7.4□□□□□ -1.231e-6■■□□□ 11.6
DDX55Q8NHQ9 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.258e-12■■□□□ 11.6
DDX55Q8NHQ9 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.278e-12■■□□□ 11.6
DDX55Q8NHQ9 ARHGAP17-204ENST00000570320 2847 ntTSL 26.87□□□□□ -1.315e-8■■□□□ 11.6
Retrieved 100 of 15,504 protein–RNA pairs in 171.8 ms