RNA–Protein interactions for RNA: ENST00000470578.1

PKDCC-203, Transcript of protein kinase domain containing, cytoplasmic, humanhuman

TSL 3

Gene PKDCC, Length 765 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKDCC-203ENST00000470578 NISCHQ9Y2I1 1504 aa39.79■■■■□ 3.96
PKDCC-203ENST00000470578 CCDC180Q9P1Z9 1646 aa35.53■■■■□ 3.28
PKDCC-203ENST00000470578 ABCC9O60706 1549 aa34.76■■■■□ 3.15
PKDCC-203ENST00000470578 RB1CC1Q8TDY2 1594 aa33.43■■■□□ 2.94
PKDCC-203ENST00000470578 NACADO15069 1562 aa33.34■■■□□ 2.93
PKDCC-203ENST00000470578 DCAF8L2P0C7V8 631 aa33.22■■■□□ 2.91
PKDCC-203ENST00000470578 ZCCHC6Q5VYS8 1495 aaKnown RBP33.16■■■□□ 2.9
PKDCC-203ENST00000470578 MYO15BQ96JP2 1530 aa33.07■■■□□ 2.89
PKDCC-203ENST00000470578 DCAF1Q9Y4B6 1507 aa32.92■■■□□ 2.86
PKDCC-203ENST00000470578 UNC13AQ9UPW8 1703 aa32.77■■■□□ 2.84
PKDCC-203ENST00000470578 SCRIBQ14160 1630 aa32.41■■■□□ 2.78
PKDCC-203ENST00000470578 PABPN1Q86U42 306 aaKnown RBP eCLIP32.41■■■□□ 2.78
PKDCC-203ENST00000470578 DNAJC5BQ9UF47 199 aa32.41■■■□□ 2.78
PKDCC-203ENST00000470578 BICRAQ9NZM4 1560 aa32.4■■■□□ 2.78
PKDCC-203ENST00000470578 SHROOM4Q9ULL8 1493 aa32.05■■■□□ 2.72
PKDCC-203ENST00000470578 EIF4G1Q04637 1599 aaKnown RBP31.57■■■□□ 2.64
PKDCC-203ENST00000470578 CC2D2AQ9P2K1 1620 aa31.47■■■□□ 2.63
PKDCC-203ENST00000470578 CECR2Q9BXF3 1484 aa31.23■■■□□ 2.59
PKDCC-203ENST00000470578 SMARCA4P51532 1647 aa30.96■■■□□ 2.55
PKDCC-203ENST00000470578 BAZ1AQ9NRL2 1556 aaPredicted RBP30.88■■■□□ 2.53
PKDCC-203ENST00000470578 SMARCA2P51531 1590 aa30.75■■■□□ 2.51
PKDCC-203ENST00000470578 ATAD2BQ9ULI0 1458 aa30.73■■■□□ 2.51
PKDCC-203ENST00000470578 NCAPD3P42695 1498 aa30.7■■■□□ 2.5
PKDCC-203ENST00000470578 MROH2BQ7Z745 1585 aa30.67■■■□□ 2.5
PKDCC-203ENST00000470578 HMGXB3Q12766 1538 aa30.63■■■□□ 2.49
PKDCC-203ENST00000470578 PEG3Q9GZU2 1588 aa30.62■■■□□ 2.49
PKDCC-203ENST00000470578 BAZ1BQ9UIG0 1483 aaKnown RBP30.53■■■□□ 2.48
PKDCC-203ENST00000470578 WIZO95785 1651 aa30.39■■■□□ 2.46
PKDCC-203ENST00000470578 RSF1Q96T23 1441 aaPredicted RBP30.25■■■□□ 2.43
PKDCC-203ENST00000470578 TOP2AP11388 1531 aaKnown RBP30.06■■■□□ 2.4
PKDCC-203ENST00000470578 NESP48681 1621 aa30.04■■■□□ 2.4
PKDCC-203ENST00000470578 ERCC6Q03468 1493 aa29.99■■■□□ 2.39
PKDCC-203ENST00000470578 LAMC3Q9Y6N6 1575 aa29.99■■■□□ 2.39
PKDCC-203ENST00000470578 CADPSQ9ULU8 1353 aa29.8■■■□□ 2.36
PKDCC-203ENST00000470578 KIF21AQ7Z4S6 1674 aa29.79■■■□□ 2.36
PKDCC-203ENST00000470578 PDS5BQ9NTI5 1447 aa29.74■■■□□ 2.35
PKDCC-203ENST00000470578 CUX2O14529 1486 aa29.69■■■□□ 2.34
PKDCC-203ENST00000470578 THOC2Q8NI27 1593 aaKnown RBP29.69■■■□□ 2.34
PKDCC-203ENST00000470578 CCDC88BA6NC98 1476 aa29.63■■■□□ 2.33
PKDCC-203ENST00000470578 CFTRP13569 1480 aa29.63■■■□□ 2.33
PKDCC-203ENST00000470578 PRDM2Q13029 1718 aa29.59■■■□□ 2.33
PKDCC-203ENST00000470578 DNAJC5Q9H3Z4 198 aa29.54■■■□□ 2.32
PKDCC-203ENST00000470578 CEP164Q9UPV0 1460 aa29.52■■■□□ 2.32
PKDCC-203ENST00000470578 FANCD2Q9BXW9 1451 aa29.51■■■□□ 2.31
PKDCC-203ENST00000470578 MRC2Q9UBG0 1479 aa29.48■■■□□ 2.31
PKDCC-203ENST00000470578 SUPT5HO00267 1087 aaKnown RBP29.41■■■□□ 2.3
PKDCC-203ENST00000470578 WDR62O43379 1518 aa29.4■■■□□ 2.3
PKDCC-203ENST00000470578 URB2Q14146 1524 aaKnown RBP29.23■■■□□ 2.27
PKDCC-203ENST00000470578 TOPBP1Q92547 1522 aa29.04■■■□□ 2.24
PKDCC-203ENST00000470578 DNMBPQ6XZF7 1577 aa29.04■■■□□ 2.24
PKDCC-203ENST00000470578 ABCC8Q09428 1581 aa29.01■■■□□ 2.23
PKDCC-203ENST00000470578 IFT140Q96RY7 1462 aa28.87■■■□□ 2.21
PKDCC-203ENST00000470578 CUX1P39880 1505 aa28.8■■■□□ 2.2
PKDCC-203ENST00000470578 POLA1P09884 1462 aaPredicted RBP28.78■■■□□ 2.2
PKDCC-203ENST00000470578 TARBP1Q13395 1621 aaKnown RBP28.75■■■□□ 2.19
PKDCC-203ENST00000470578 ZNF608Q9ULD9 1512 aaPredicted RBP28.74■■■□□ 2.19
PKDCC-203ENST00000470578 FGD5Q6ZNL6 1462 aa28.72■■■□□ 2.19
PKDCC-203ENST00000470578 EIF4G3O43432 1585 aaKnown RBP28.72■■■□□ 2.19
PKDCC-203ENST00000470578 RAD54L2Q9Y4B4 1467 aa28.65■■■□□ 2.18
PKDCC-203ENST00000470578 SOGA1O94964 1423 aa28.61■■■□□ 2.17
PKDCC-203ENST00000470578 BIVM-ERCC5R4GMW8 1640 aa28.58■■■□□ 2.17
PKDCC-203ENST00000470578 WDR97A6NE52 1622 aa28.57■■■□□ 2.16
PKDCC-203ENST00000470578 SYNJ1O43426 1573 aa28.56■■■□□ 2.16
PKDCC-203ENST00000470578 WRNQ14191 1432 aaPredicted RBP eCLIP28.56■■■□□ 2.16
PKDCC-203ENST00000470578 TOP2BQ02880 1626 aa28.55■■■□□ 2.16
PKDCC-203ENST00000470578 AQRO60306 1485 aaKnown RBP eCLIP28.55■■■□□ 2.16
PKDCC-203ENST00000470578 OSCARQ8IYS5 282 aa28.53■■■□□ 2.16
PKDCC-203ENST00000470578 TDRD9Q8NDG6 1382 aaKnown RBP28.47■■■□□ 2.15
PKDCC-203ENST00000470578 ABCA10Q8WWZ4 1543 aa28.42■■■□□ 2.14
PKDCC-203ENST00000470578 PBRM1Q86U86 1689 aa28.41■■■□□ 2.14
PKDCC-203ENST00000470578 CHD1O14646 1710 aa28.4■■■□□ 2.14
PKDCC-203ENST00000470578 TRIM41Q8WV44 630 aa28.38■■■□□ 2.13
PKDCC-203ENST00000470578 ABCA5Q8WWZ7 1642 aa28.38■■■□□ 2.13
PKDCC-203ENST00000470578 SNAPC4Q5SXM2 1469 aa28.34■■■□□ 2.13
PKDCC-203ENST00000470578 GRIN2BQ13224 1484 aa28.34■■■□□ 2.13
PKDCC-203ENST00000470578 GAPVD1Q14C86 1478 aa28.33■■■□□ 2.13
PKDCC-203ENST00000470578 MAGI1Q96QZ7 1491 aaPredicted RBP28.29■■■□□ 2.12
PKDCC-203ENST00000470578 FBLN2P98095 1184 aa28.22■■■□□ 2.11
PKDCC-203ENST00000470578 SYNJ2O15056 1496 aa28.17■■■□□ 2.1
PKDCC-203ENST00000470578 ADAMTS12P58397 1594 aa28.13■■■□□ 2.09
PKDCC-203ENST00000470578 CHMP7Q8WUX9 453 aaPredicted RBP28.11■■■□□ 2.09
PKDCC-203ENST00000470578 ERICH3Q5RHP9 1530 aa28.09■■■□□ 2.09
PKDCC-203ENST00000470578 RIMBP3CA6NJZ7 1639 aa28.04■■■□□ 2.08
PKDCC-203ENST00000470578 RIMBP3BA6NNM3 1639 aa28.04■■■□□ 2.08
PKDCC-203ENST00000470578 RIMBP3Q9UFD9 1639 aa28.04■■■□□ 2.08
PKDCC-203ENST00000470578 CLASP1Q7Z460 1538 aa28.02■■■□□ 2.08
PKDCC-203ENST00000470578 ARHGEF11O15085 1522 aa27.99■■■□□ 2.07
PKDCC-203ENST00000470578 GRIN2AQ12879 1464 aa27.99■■■□□ 2.07
PKDCC-203ENST00000470578 FHAD1B1AJZ9 1412 aa27.98■■■□□ 2.07
PKDCC-203ENST00000470578 KIF27Q86VH2 1401 aa27.96■■■□□ 2.07
PKDCC-203ENST00000470578 CUL7Q14999 1698 aa27.89■■■□□ 2.06
PKDCC-203ENST00000470578 CEP170Q5SW79 1584 aa27.88■■■□□ 2.05
PKDCC-203ENST00000470578 CYB5RLQ6IPT4 315 aa27.87■■■□□ 2.05
PKDCC-203ENST00000470578 NUP160Q12769 1436 aa27.84■■■□□ 2.05
PKDCC-203ENST00000470578 IGF1RP08069 1367 aa27.78■■■□□ 2.04
PKDCC-203ENST00000470578 ARAP1Q96P48 1450 aa27.76■■■□□ 2.03
PKDCC-203ENST00000470578 RUSC2Q8N2Y8 1516 aa27.72■■■□□ 2.03
PKDCC-203ENST00000470578 SHROOM2Q13796 1616 aa27.7■■■□□ 2.02
PKDCC-203ENST00000470578 CARMIL1Q5VZK9 1371 aa27.66■■■□□ 2.02
PKDCC-203ENST00000470578 ERCC6L2Q5T890 1561 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms