Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.14■□□□□ 0.491e-7■□□□□ 11.3
SMNDC1O75940 POLR3E-211ENST00000564750 2327 ntTSL 217.27■□□□□ 0.351e-7■□□□□ 11.3
SMNDC1O75940 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.15■□□□□ 0.341e-7■□□□□ 11.3
SMNDC1O75940 POLR3E-219ENST00000615879 3655 ntTSL 2 BASIC13.23□□□□□ -0.291e-7■□□□□ 11.3
SMNDC1O75940 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.331e-7■□□□□ 11.3
SMNDC1O75940 POLR3E-208ENST00000564061 4800 ntTSL 1 (best)12.9□□□□□ -0.341e-7■□□□□ 11.3
SMNDC1O75940 SNORD53-201ENST00000579969 78 ntBASIC2.3□□□□□ -2.048e-65■□□□□ 11.2
SMNDC1O75940 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.26■□□□□ 0.031e-8■□□□□ 11.2
SMNDC1O75940 NABP1-201ENST00000307834 1914 ntTSL 315.21■□□□□ 0.031e-8■□□□□ 11.2
SMNDC1O75940 NABP1-207ENST00000451500 2015 ntTSL 512.72□□□□□ -0.371e-8■□□□□ 11.2
SMNDC1O75940 NABP1-202ENST00000307849 3002 ntTSL 29.66□□□□□ -0.861e-8■□□□□ 11.2
SMNDC1O75940 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC7.15□□□□□ -1.271e-8■□□□□ 11.2
SMNDC1O75940 NABP1-206ENST00000435931 915 ntTSL 56.43□□□□□ -1.381e-8■□□□□ 11.2
SMNDC1O75940 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.511e-8■□□□□ 11.2
SMNDC1O75940 RBM39-213ENST00000433027 611 ntTSL 513.64□□□□□ -0.235e-15■□□□□ 11.2
SMNDC1O75940 RBM39-234ENST00000487604 370 ntTSL 37.55□□□□□ -1.25e-15■□□□□ 11.2
SMNDC1O75940 GUK1-226ENST00000484953 273 ntTSL 212.4□□□□□ -0.422e-7■□□□□ 11.2
SMNDC1O75940 E4F1-202ENST00000562589 817 ntTSL 522.45■■□□□ 1.185e-6■□□□□ 11.2
SMNDC1O75940 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.92■■□□□ 1.15e-6■□□□□ 11.2
SMNDC1O75940 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.035e-6■□□□□ 11.2
SMNDC1O75940 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.98■□□□□ 0.795e-6■□□□□ 11.2
SMNDC1O75940 E4F1-207ENST00000565413 940 ntTSL 317.93■□□□□ 0.465e-6■□□□□ 11.2
SMNDC1O75940 E4F1-209ENST00000569796 5931 ntTSL 217.4■□□□□ 0.385e-6■□□□□ 11.2
SMNDC1O75940 VPS13D-202ENST00000460333 4910 ntTSL 26.43□□□□□ -1.381e-10■□□□□ 11.2
SMNDC1O75940 MIR1291-201ENST00000627649 87 ntBASIC2.11□□□□□ -2.071e-323■□□□□ 11.2
SMNDC1O75940 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.798e-8■□□□□ 11.2
SMNDC1O75940 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.158e-8■□□□□ 11.2
SMNDC1O75940 UVSSA-202ENST00000389851 12605 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.788e-8■□□□□ 11.2
SMNDC1O75940 ARF1-209ENST00000478424 1059 ntTSL 222.53■■□□□ 1.22e-7■□□□□ 11.2
SMNDC1O75940 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.162e-7■□□□□ 11.2
SMNDC1O75940 ARF1-208ENST00000478336 930 ntTSL 221.37■■□□□ 1.012e-7■□□□□ 11.2
SMNDC1O75940 ARF1-206ENST00000473949 578 ntTSL 518.77■□□□□ 0.62e-7■□□□□ 11.2
SMNDC1O75940 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.222e-7■□□□□ 11.2
SMNDC1O75940 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.38■□□□□ 0.058e-7■□□□□ 11.2
SMNDC1O75940 ARF1-207ENST00000477451 789 ntTSL 515.38■□□□□ 0.052e-7■□□□□ 11.2
SMNDC1O75940 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.038e-7■□□□□ 11.2
SMNDC1O75940 ARF1-202ENST00000469235 678 ntTSL 314.15□□□□□ -0.142e-7■□□□□ 11.2
SMNDC1O75940 ARF1-203ENST00000470558 820 ntTSL 213.96□□□□□ -0.172e-7■□□□□ 11.2
SMNDC1O75940 ARF1-210ENST00000482962 597 ntTSL 313.38□□□□□ -0.272e-7■□□□□ 11.2
SMNDC1O75940 ARF1-204ENST00000470670 712 ntTSL 312.91□□□□□ -0.342e-7■□□□□ 11.2
SMNDC1O75940 ARF1-205ENST00000473546 291 ntTSL 211.87□□□□□ -0.512e-7■□□□□ 11.2
SMNDC1O75940 ARF1-201ENST00000272102 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.532e-7■□□□□ 11.2
SMNDC1O75940 SNHG16-205ENST00000587743 2665 nt16.73■□□□□ 0.274e-16■□□□□ 11.1
SMNDC1O75940 SNORD1C-201ENST00000363315 78 ntBASIC6.01□□□□□ -1.454e-16■□□□□ 11.1
SMNDC1O75940 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.66□□□□□ -0.062e-9■□□□□ 11.1
SMNDC1O75940 LAMB1-205ENST00000439976 703 ntTSL 514.66□□□□□ -0.061e-7■□□□□ 11.1
SMNDC1O75940 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.21e-7■□□□□ 11.1
SMNDC1O75940 LAMB1-203ENST00000393560 2806 ntTSL 1 (best) BASIC12.92□□□□□ -0.341e-7■□□□□ 11.1
SMNDC1O75940 LAMB1-202ENST00000393559 550 ntTSL 212.25□□□□□ -0.451e-7■□□□□ 11.1
SMNDC1O75940 FASN-213ENST00000637693 100 ntTSL 58.46□□□□□ -1.066e-7■□□□□ 11.1
SMNDC1O75940 NUP214-224ENST00000530863 560 ntTSL 55.64□□□□□ -1.511e-9■□□□□ 11.1
SMNDC1O75940 CNOT1-212ENST00000567285 722 ntTSL 48.28□□□□□ -1.084e-80■□□□□ 11.1
SMNDC1O75940 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.42□□□□□ -1.224e-80■□□□□ 11.1
SMNDC1O75940 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.39□□□□□ -1.394e-80■□□□□ 11.1
SMNDC1O75940 CNOT1-211ENST00000567188 7830 ntTSL 1 (best)6.19□□□□□ -1.424e-80■□□□□ 11.1
SMNDC1O75940 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.654e-80■□□□□ 11.1
SMNDC1O75940 SNORA46-201ENST00000384762 135 ntBASIC3.25□□□□□ -1.894e-80■□□□□ 11.1
SMNDC1O75940 HNRNPDL-203ENST00000502762 2356 ntTSL 1 (best)21.31■■□□□ 18e-16■□□□□ 11.1
SMNDC1O75940 HNRNPDL-209ENST00000630114 1433 ntTSL 518.45■□□□□ 0.548e-16■□□□□ 11.1
SMNDC1O75940 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.088e-16■□□□□ 11.1
SMNDC1O75940 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.048e-16■□□□□ 11.1
SMNDC1O75940 HNRNPDL-202ENST00000349655 1402 ntTSL 1 (best)15.23■□□□□ 0.038e-16■□□□□ 11.1
SMNDC1O75940 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.018e-16■□□□□ 11.1
SMNDC1O75940 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.71□□□□□ -0.228e-16■□□□□ 11.1
SMNDC1O75940 HNRNPDL-201ENST00000295470 3781 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.588e-16■□□□□ 11.1
SMNDC1O75940 HNRNPDL-204ENST00000507721 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.848e-16■□□□□ 11.1
SMNDC1O75940 RPL39-202ENST00000468844 1915 ntTSL 1 (best)15.95■□□□□ 0.141e-323■□□□□ 11.1
SMNDC1O75940 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.221e-323■□□□□ 11.1
SMNDC1O75940 RPL39-203ENST00000477403 405 ntTSL 36.43□□□□□ -1.381e-323■□□□□ 11.1
SMNDC1O75940 SNORA69-201ENST00000383895 132 ntBASIC6.24□□□□□ -1.411e-323■□□□□ 11.1
SMNDC1O75940 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.563e-6■□□□□ 11.1
SMNDC1O75940 RHEB-205ENST00000478470 1153 ntTSL 522.5■■□□□ 1.193e-6■□□□□ 11.1
SMNDC1O75940 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.29■□□□□ 0.523e-6■□□□□ 11.1
SMNDC1O75940 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.74□□□□□ -0.373e-6■□□□□ 11.1
SMNDC1O75940 FN1-226ENST00000496542 695 ntTSL 211.69□□□□□ -0.541e-9■□□□□ 11.1
SMNDC1O75940 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.293e-9■□□□□ 11.1
SMNDC1O75940 PPP1R12C-207ENST00000591938 1262 ntTSL 515.25■□□□□ 0.035e-6■□□□□ 11.1
SMNDC1O75940 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.41□□□□□ -0.13e-9■□□□□ 11.1
SMNDC1O75940 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.13e-9■□□□□ 11.1
SMNDC1O75940 RPL13A-211ENST00000486930 652 ntTSL 314□□□□□ -0.171e-323■□□□□ 11
SMNDC1O75940 FKBP10-205ENST00000487489 578 ntTSL 215.55■□□□□ 0.086e-7■□□□□ 11
SMNDC1O75940 SNORA5C-201ENST00000364902 137 ntBASIC9.42□□□□□ -0.91e-32■□□□□ 11
SMNDC1O75940 ZDHHC8-207ENST00000472497 909 ntTSL 215.87■□□□□ 0.133e-6■□□□□ 11
SMNDC1O75940 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.344e-6■□□□□ 11
SMNDC1O75940 PPP1R12C-209ENST00000592993 2269 ntTSL 1 (best)20.38■□□□□ 0.854e-6■□□□□ 11
SMNDC1O75940 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.42■□□□□ 0.544e-6■□□□□ 11
SMNDC1O75940 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.983e-13■□□□□ 11
SMNDC1O75940 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.933e-13■□□□□ 11
SMNDC1O75940 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.713e-13■□□□□ 11
SMNDC1O75940 MAN2A2-221ENST00000560451 5124 ntTSL 1 (best)20.23■□□□□ 0.838e-7■□□□□ 11
SMNDC1O75940 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.72■■□□□ 1.391e-7■□□□□ 11
SMNDC1O75940 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.111e-7■□□□□ 11
SMNDC1O75940 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.261e-7■□□□□ 11
SMNDC1O75940 AP2A2-212ENST00000528195 562 ntTSL 316.28■□□□□ 0.21e-7■□□□□ 11
SMNDC1O75940 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.11e-7■□□□□ 11
SMNDC1O75940 AP2A2-213ENST00000528815 3072 ntTSL 215.3■□□□□ 0.041e-7■□□□□ 11
SMNDC1O75940 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.82□□□□□ -0.041e-7■□□□□ 11
SMNDC1O75940 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.281e-7■□□□□ 11
SMNDC1O75940 MAU2-211ENST00000589947 670 ntTSL 411.86□□□□□ -0.511e-7■□□□□ 11
SMNDC1O75940 MAU2-202ENST00000262816 3838 ntTSL 211.2□□□□□ -0.621e-7■□□□□ 11
Retrieved 100 of 11,362 protein–RNA pairs in 97.9 ms