RNA–Protein interactions for RNA: ENST00000487604.1

RBM39-234, Transcript of RNA binding motif protein 39, humanhuman

TSL 3

Gene RBM39, Length 370 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-234ENST00000487604 AEBP2Q6ZN18 517 aaPredicted RBP25.05■■□□□ 1.6
RBM39-234ENST00000487604 CHIC1Q5VXU3 224 aa24.04■■□□□ 1.44
RBM39-234ENST00000487604 SENP3Q9H4L4 574 aaPredicted RBP21.28■■□□□ 1
RBM39-234ENST00000487604 PHF23Q9BUL5 403 aaPredicted RBP21.14■□□□□ 0.97
RBM39-234ENST00000487604 FOXD1Q16676 465 aa19.84■□□□□ 0.77
RBM39-234ENST00000487604 PLPPR3Q6T4P5 718 aa19.32■□□□□ 0.68
RBM39-234ENST00000487604 PPP6R1Q9UPN7 881 aa18.8■□□□□ 0.6
RBM39-234ENST00000487604 ADRA2BP18089 450 aa18.75■□□□□ 0.59
RBM39-234ENST00000487604 PIAS4Q8N2W9 510 aaPredicted RBP18.57■□□□□ 0.56
RBM39-234ENST00000487604 MSH5O43196 834 aa18.4■□□□□ 0.54
RBM39-234ENST00000487604 POTEDQ86YR6 584 aa17.5■□□□□ 0.39
RBM39-234ENST00000487604 MAPK8IP2Q13387 824 aaPredicted RBP17.14■□□□□ 0.33
RBM39-234ENST00000487604 SCAF1Q9H7N4 1312 aaKnown RBP17.1■□□□□ 0.33
RBM39-234ENST00000487604 PPP4R3CPQ6ZMV5 832 aa17■□□□□ 0.31
RBM39-234ENST00000487604 DMRT2Q9Y5R5 561 aa16.94■□□□□ 0.3
RBM39-234ENST00000487604 CNKSR2Q8WXI2 1034 aa16.59■□□□□ 0.25
RBM39-234ENST00000487604 HOXD11P31277 338 aaPredicted RBP16.43■□□□□ 0.22
RBM39-234ENST00000487604 NCBP3Q53F19 620 aaKnown RBP16.41■□□□□ 0.22
RBM39-234ENST00000487604 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
RBM39-234ENST00000487604 DCAF8L1A6NGE4 600 aa16.2■□□□□ 0.18
RBM39-234ENST00000487604 NPM3O75607 178 aaKnown RBP16.2■□□□□ 0.18
RBM39-234ENST00000487604 KCNA4P22459 653 aa16.16■□□□□ 0.18
RBM39-234ENST00000487604 DNAJC5BQ9UF47 199 aa15.79■□□□□ 0.12
RBM39-234ENST00000487604 RNF39Q9H2S5 420 aa15.76■□□□□ 0.11
RBM39-234ENST00000487604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.64■□□□□ 0.092e-21■■□□□ 12.6
RBM39-234ENST00000487604 CACNB1Q02641 598 aaPredicted RBP15.63■□□□□ 0.09
RBM39-234ENST00000487604 C1QBPQ07021 282 aaKnown RBP15.53■□□□□ 0.08
RBM39-234ENST00000487604 SLC4A2P04920 1241 aa15.42■□□□□ 0.06
RBM39-234ENST00000487604 U3KPZ7 1027 aaPredicted RBP15.35■□□□□ 0.05
RBM39-234ENST00000487604 SLC4A1APQ9BWU0 796 aaKnown RBP15.29■□□□□ 0.04
RBM39-234ENST00000487604 SPINK5Q9NQ38 1064 aaPredicted RBP15.06■□□□□ 0
RBM39-234ENST00000487604 CAPN15O75808 1086 aa14.99□□□□□ -0.01
RBM39-234ENST00000487604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.97□□□□□ -0.01
RBM39-234ENST00000487604 HNRNPUL2Q1KMD3 747 aaKnown RBP14.97□□□□□ -0.01
RBM39-234ENST00000487604 MYCNP04198 464 aaPredicted RBP14.94□□□□□ -0.02
RBM39-234ENST00000487604 FOXD4L1Q9NU39 408 aa14.94□□□□□ -0.02
RBM39-234ENST00000487604 SAMD1Q6SPF0 538 aaPredicted RBP14.92□□□□□ -0.02
RBM39-234ENST00000487604 APLP2Q06481 763 aa14.9□□□□□ -0.02
RBM39-234ENST00000487604 ZBTB22O15209 634 aa14.88□□□□□ -0.03
RBM39-234ENST00000487604 DSG3P32926 999 aa14.86□□□□□ -0.03
RBM39-234ENST00000487604 TRHP20396 242 aaPredicted RBP14.82□□□□□ -0.04
RBM39-234ENST00000487604 ZNF219Q9P2Y4 722 aaPredicted RBP14.78□□□□□ -0.04
RBM39-234ENST00000487604 ABCB7O75027 752 aa14.68□□□□□ -0.06
RBM39-234ENST00000487604 ATF5Q9Y2D1 282 aaPredicted RBP14.64□□□□□ -0.07
RBM39-234ENST00000487604 POLA2Q14181 598 aa14.52□□□□□ -0.09
RBM39-234ENST00000487604 ATXN8OSP0DMR3 200 aa14.48□□□□□ -0.09
RBM39-234ENST00000487604 CSRNP3Q8WYN3 585 aa14.44□□□□□ -0.1
RBM39-234ENST00000487604 EHMT2Q96KQ7 1210 aa14.38□□□□□ -0.11
RBM39-234ENST00000487604 ZBTB12Q9Y330 459 aaPredicted RBP14.2□□□□□ -0.14
RBM39-234ENST00000487604 RBM42Q9BTD8 480 aaKnown RBP14.12□□□□□ -0.15
RBM39-234ENST00000487604 OSCARQ8IYS5 282 aa14.02□□□□□ -0.17
RBM39-234ENST00000487604 FBLN2P98095 1184 aa13.99□□□□□ -0.17
RBM39-234ENST00000487604 MKRN4PQ13434 485 aaPredicted RBP13.97□□□□□ -0.17
RBM39-234ENST00000487604 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
RBM39-234ENST00000487604 SPDYE2BA6NHP3 402 aa13.8□□□□□ -0.2
RBM39-234ENST00000487604 SPDYE6P0CI01 402 aa13.8□□□□□ -0.2
RBM39-234ENST00000487604 SPDYE2Q495Y8 402 aa13.8□□□□□ -0.2
RBM39-234ENST00000487604 REM2Q8IYK8 340 aaPredicted RBP13.78□□□□□ -0.2
RBM39-234ENST00000487604 POTEHQ6S545 545 aa13.76□□□□□ -0.21
RBM39-234ENST00000487604 CHRDL2Q6WN34 429 aa13.74□□□□□ -0.21
RBM39-234ENST00000487604 ZNF692Q9BU19 519 aaPredicted RBP13.69□□□□□ -0.22
RBM39-234ENST00000487604 SSUH2Q9Y2M2 353 aa13.67□□□□□ -0.22
RBM39-234ENST00000487604 PITPNM1O00562 1244 aa13.62□□□□□ -0.23
RBM39-234ENST00000487604 PABPN1Q86U42 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
RBM39-234ENST00000487604 SPDYE1Q8NFV5 336 aaPredicted RBP13.49□□□□□ -0.25
RBM39-234ENST00000487604 PIP4P2Q8N4L2 257 aa13.48□□□□□ -0.25
RBM39-234ENST00000487604 CLEC11AQ9Y240 323 aa13.45□□□□□ -0.26
RBM39-234ENST00000487604 FXR2P51116 673 aaKnown RBP eCLIP13.44□□□□□ -0.262e-52■□□□□ 9
RBM39-234ENST00000487604 SPDYE4A6NLX3 237 aa13.43□□□□□ -0.26
RBM39-234ENST00000487604 PRR29P0C7W0 189 aa13.27□□□□□ -0.29
RBM39-234ENST00000487604 PRKAR2AP13861 404 aaKnown RBP13.26□□□□□ -0.29
RBM39-234ENST00000487604 CHADLQ6NUI6 762 aa13.18□□□□□ -0.3
RBM39-234ENST00000487604 PROM2Q8N271 834 aa13.17□□□□□ -0.3
RBM39-234ENST00000487604 STAG3Q9UJ98 1225 aa13.17□□□□□ -0.3
RBM39-234ENST00000487604 HAX1O00165 279 aa13.15□□□□□ -0.3
RBM39-234ENST00000487604 EVX2Q03828 476 aa13.06□□□□□ -0.32
RBM39-234ENST00000487604 FKBP8Q14318 412 aa13.05□□□□□ -0.32
RBM39-234ENST00000487604 CREBZFQ9NS37 354 aa13.04□□□□□ -0.32
RBM39-234ENST00000487604 SP7Q8TDD2 431 aaPredicted RBP13.03□□□□□ -0.32
RBM39-234ENST00000487604 FARP1Q9Y4F1 1045 aaPredicted RBP13.02□□□□□ -0.33
RBM39-234ENST00000487604 C19orf67A6NJJ6 358 aa13.01□□□□□ -0.33
RBM39-234ENST00000487604 MNX1P50219 401 aaPredicted RBP12.87□□□□□ -0.35
RBM39-234ENST00000487604 CD44P16070 742 aaKnown RBP12.85□□□□□ -0.35
RBM39-234ENST00000487604 MIER1Q8N108 512 aa12.79□□□□□ -0.36
RBM39-234ENST00000487604 NPM1P06748 294 aaKnown RBP eCLIP12.77□□□□□ -0.37
RBM39-234ENST00000487604 GABBR2O75899 941 aa12.74□□□□□ -0.37
RBM39-234ENST00000487604 ZRANB1Q9UGI0 708 aa12.72□□□□□ -0.37
RBM39-234ENST00000487604 PLCD3Q8N3E9 789 aa12.7□□□□□ -0.38
RBM39-234ENST00000487604 PLEKHG5O94827 1062 aa12.69□□□□□ -0.38
RBM39-234ENST00000487604 ZNF579Q8NAF0 562 aaKnown RBP12.68□□□□□ -0.38
RBM39-234ENST00000487604 FBXO3Q9UK99 471 aa12.68□□□□□ -0.38
RBM39-234ENST00000487604 PAK3O75914 559 aaPredicted RBP12.64□□□□□ -0.39
RBM39-234ENST00000487604 CLCN6P51797 869 aa12.61□□□□□ -0.39
RBM39-234ENST00000487604 PHF12Q96QT6 1004 aa12.59□□□□□ -0.39
RBM39-234ENST00000487604 TSPYL2Q9H2G4 693 aaPredicted RBP12.57□□□□□ -0.4
RBM39-234ENST00000487604 ZBTB47Q9UFB7 747 aaPredicted RBP12.56□□□□□ -0.4
RBM39-234ENST00000487604 RASEFQ8IZ41 740 aa12.55□□□□□ -0.4
RBM39-234ENST00000487604 VASPP50552 380 aaPredicted RBP12.54□□□□□ -0.4
RBM39-234ENST00000487604 NUBP1P53384 320 aa12.52□□□□□ -0.41
RBM39-234ENST00000487604 GALR2O43603 387 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms