Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHGA11Q9Y5H2 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHGA11Q9Y5H2 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.53■■□□□ 1.52
PCDHGA11Q9Y5H2 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.53■■□□□ 1.52
PCDHGA11Q9Y5H2 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHGA11Q9Y5H2 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHGA11Q9Y5H2 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.53■■□□□ 1.52
PCDHGA11Q9Y5H2 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHGA11Q9Y5H2 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.53■■□□□ 1.52
PCDHGA11Q9Y5H2 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
PCDHGA11Q9Y5H2 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PCDHGA11Q9Y5H2 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
PCDHGA11Q9Y5H2 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHGA11Q9Y5H2 AP002414.2-202ENST00000590929 1450 ntBASIC24.51■■□□□ 1.51
PCDHGA11Q9Y5H2 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHGA11Q9Y5H2 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHGA11Q9Y5H2 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24.51■■□□□ 1.51
PCDHGA11Q9Y5H2 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHGA11Q9Y5H2 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHGA11Q9Y5H2 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHGA11Q9Y5H2 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.5■■□□□ 1.51
PCDHGA11Q9Y5H2 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHGA11Q9Y5H2 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
PCDHGA11Q9Y5H2 RPS2P35-201ENST00000443417 897 ntBASIC24.49■■□□□ 1.51
PCDHGA11Q9Y5H2 AL121749.1-202ENST00000609313 2153 ntBASIC24.49■■□□□ 1.51
PCDHGA11Q9Y5H2 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHGA11Q9Y5H2 DUX4L29-201ENST00000425409 679 ntBASIC24.48■■□□□ 1.51
PCDHGA11Q9Y5H2 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHGA11Q9Y5H2 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHGA11Q9Y5H2 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHGA11Q9Y5H2 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.47■■□□□ 1.51
PCDHGA11Q9Y5H2 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHGA11Q9Y5H2 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
PCDHGA11Q9Y5H2 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHGA11Q9Y5H2 BX255925.1-201ENST00000566954 1854 ntBASIC24.47■■□□□ 1.51
PCDHGA11Q9Y5H2 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHGA11Q9Y5H2 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHGA11Q9Y5H2 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHGA11Q9Y5H2 AC021231.2-201ENST00000594613 730 ntBASIC24.46■■□□□ 1.51
PCDHGA11Q9Y5H2 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHGA11Q9Y5H2 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.46■■□□□ 1.51
PCDHGA11Q9Y5H2 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.45■■□□□ 1.5
PCDHGA11Q9Y5H2 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGA11Q9Y5H2 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGA11Q9Y5H2 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGA11Q9Y5H2 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGA11Q9Y5H2 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHGA11Q9Y5H2 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHGA11Q9Y5H2 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
PCDHGA11Q9Y5H2 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.43■■□□□ 1.5
PCDHGA11Q9Y5H2 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGA11Q9Y5H2 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGA11Q9Y5H2 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGA11Q9Y5H2 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGA11Q9Y5H2 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGA11Q9Y5H2 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGA11Q9Y5H2 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.42■■□□□ 1.5
PCDHGA11Q9Y5H2 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.42■■□□□ 1.5
PCDHGA11Q9Y5H2 LINC01003-201ENST00000564834 1764 ntBASIC24.42■■□□□ 1.5
PCDHGA11Q9Y5H2 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHGA11Q9Y5H2 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
PCDHGA11Q9Y5H2 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.4■■□□□ 1.5
PCDHGA11Q9Y5H2 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGA11Q9Y5H2 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGA11Q9Y5H2 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
PCDHGA11Q9Y5H2 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PCDHGA11Q9Y5H2 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
PCDHGA11Q9Y5H2 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.49
PCDHGA11Q9Y5H2 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGA11Q9Y5H2 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGA11Q9Y5H2 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.39■■□□□ 1.49
PCDHGA11Q9Y5H2 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGA11Q9Y5H2 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGA11Q9Y5H2 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGA11Q9Y5H2 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.38■■□□□ 1.49
PCDHGA11Q9Y5H2 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA11Q9Y5H2 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA11Q9Y5H2 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA11Q9Y5H2 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.37■■□□□ 1.49
PCDHGA11Q9Y5H2 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGA11Q9Y5H2 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGA11Q9Y5H2 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA11Q9Y5H2 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC24.36■■□□□ 1.49
PCDHGA11Q9Y5H2 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA11Q9Y5H2 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHGA11Q9Y5H2 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.35■■□□□ 1.49
PCDHGA11Q9Y5H2 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.35■■□□□ 1.49
PCDHGA11Q9Y5H2 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA11Q9Y5H2 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA11Q9Y5H2 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
PCDHGA11Q9Y5H2 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC24.33■■□□□ 1.49
PCDHGA11Q9Y5H2 HGH1-207ENST00000628266 258 ntTSL 5 BASIC24.33■■□□□ 1.49
PCDHGA11Q9Y5H2 AC018358.1-201ENST00000631079 1402 ntBASIC24.33■■□□□ 1.49
PCDHGA11Q9Y5H2 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
PCDHGA11Q9Y5H2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
PCDHGA11Q9Y5H2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
PCDHGA11Q9Y5H2 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHGA11Q9Y5H2 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC24.32■■□□□ 1.48
PCDHGA11Q9Y5H2 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHGA11Q9Y5H2 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms