Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.42■■□□□ 1.82
CDH6P55285 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.42■■□□□ 1.82
CDH6P55285 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CDH6P55285 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CDH6P55285 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDH6P55285 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CDH6P55285 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDH6P55285 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDH6P55285 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CDH6P55285 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.4■■□□□ 1.82
CDH6P55285 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CDH6P55285 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CDH6P55285 BX255925.1-201ENST00000566954 1854 ntBASIC26.4■■□□□ 1.82
CDH6P55285 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.39■■□□□ 1.82
CDH6P55285 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
CDH6P55285 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDH6P55285 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDH6P55285 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDH6P55285 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
CDH6P55285 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.38■■□□□ 1.81
CDH6P55285 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CDH6P55285 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.38■■□□□ 1.81
CDH6P55285 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CDH6P55285 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.37■■□□□ 1.81
CDH6P55285 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
CDH6P55285 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CDH6P55285 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
CDH6P55285 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.36■■□□□ 1.81
CDH6P55285 LINC01003-201ENST00000564834 1764 ntBASIC26.35■■□□□ 1.81
CDH6P55285 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
CDH6P55285 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CDH6P55285 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
CDH6P55285 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDH6P55285 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.34■■□□□ 1.81
CDH6P55285 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDH6P55285 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDH6P55285 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
CDH6P55285 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
CDH6P55285 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
CDH6P55285 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.33■■□□□ 1.81
CDH6P55285 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
CDH6P55285 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
CDH6P55285 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
CDH6P55285 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CDH6P55285 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
CDH6P55285 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.3■■□□□ 1.8
CDH6P55285 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CDH6P55285 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.3■■□□□ 1.8
CDH6P55285 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.3■■□□□ 1.8
CDH6P55285 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.3■■□□□ 1.8
CDH6P55285 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CDH6P55285 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CDH6P55285 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CDH6P55285 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.28■■□□□ 1.8
CDH6P55285 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.28■■□□□ 1.8
CDH6P55285 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CDH6P55285 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CDH6P55285 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CDH6P55285 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CDH6P55285 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CDH6P55285 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.27■■□□□ 1.8
CDH6P55285 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CDH6P55285 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CDH6P55285 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CDH6P55285 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CDH6P55285 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CDH6P55285 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.25■■□□□ 1.79
CDH6P55285 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CDH6P55285 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
CDH6P55285 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
CDH6P55285 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CDH6P55285 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CDH6P55285 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CDH6P55285 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
CDH6P55285 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
CDH6P55285 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
CDH6P55285 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.24■■□□□ 1.79
CDH6P55285 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
CDH6P55285 AC018358.1-201ENST00000631079 1402 ntBASIC26.23■■□□□ 1.79
CDH6P55285 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.23■■□□□ 1.79
CDH6P55285 AC110285.7-201ENST00000624417 1536 ntBASIC26.23■■□□□ 1.79
CDH6P55285 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.22■■□□□ 1.79
CDH6P55285 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
CDH6P55285 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
CDH6P55285 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CDH6P55285 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CDH6P55285 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
CDH6P55285 AL121749.1-202ENST00000609313 2153 ntBASIC26.2■■□□□ 1.78
CDH6P55285 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.2■■□□□ 1.78
CDH6P55285 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CDH6P55285 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CDH6P55285 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CDH6P55285 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CDH6P55285 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.18■■□□□ 1.78
CDH6P55285 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.18■■□□□ 1.78
CDH6P55285 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CDH6P55285 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CDH6P55285 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CDH6P55285 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.16■■□□□ 1.78
CDH6P55285 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms