Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.19■■■■□ 3.22
CDH6P55285 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
CDH6P55285 AL356512.1-201ENST00000607453 1739 ntBASIC34.5■■■■□ 3.11
CDH6P55285 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.38■■■■□ 3.09
CDH6P55285 HES6-203ENST00000409160 1600 ntTSL 2 BASIC34.18■■■■□ 3.06
CDH6P55285 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
CDH6P55285 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.03■■■■□ 3.04
CDH6P55285 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
CDH6P55285 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.89■■■■□ 3.02
CDH6P55285 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.56■■■□□ 2.96
CDH6P55285 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.53■■■□□ 2.96
CDH6P55285 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.38■■■□□ 2.93
CDH6P55285 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC33.18■■■□□ 2.9
CDH6P55285 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
CDH6P55285 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.94■■■□□ 2.86
CDH6P55285 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.66■■■□□ 2.82
CDH6P55285 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.62■■■□□ 2.81
CDH6P55285 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
CDH6P55285 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.54■■■□□ 2.8
CDH6P55285 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CDH6P55285 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.45■■■□□ 2.79
CDH6P55285 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC32.41■■■□□ 2.78
CDH6P55285 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
CDH6P55285 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.32■■■□□ 2.77
CDH6P55285 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
CDH6P55285 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.27■■■□□ 2.76
CDH6P55285 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.2■■■□□ 2.75
CDH6P55285 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.18■■■□□ 2.74
CDH6P55285 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
CDH6P55285 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CDH6P55285 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CDH6P55285 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
CDH6P55285 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CDH6P55285 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.88■■■□□ 2.69
CDH6P55285 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.86■■■□□ 2.69
CDH6P55285 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
CDH6P55285 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
CDH6P55285 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.7■■■□□ 2.66
CDH6P55285 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CDH6P55285 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CDH6P55285 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CDH6P55285 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.48■■■□□ 2.63
CDH6P55285 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
CDH6P55285 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
CDH6P55285 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.2■■■□□ 2.59
CDH6P55285 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
CDH6P55285 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.19■■■□□ 2.58
CDH6P55285 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CDH6P55285 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CDH6P55285 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CDH6P55285 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CDH6P55285 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CDH6P55285 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
CDH6P55285 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
CDH6P55285 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.02■■■□□ 2.56
CDH6P55285 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31■■■□□ 2.55
CDH6P55285 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CDH6P55285 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.96■■■□□ 2.55
CDH6P55285 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.54
CDH6P55285 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CDH6P55285 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
CDH6P55285 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.92■■■□□ 2.54
CDH6P55285 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
CDH6P55285 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CDH6P55285 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.75■■■□□ 2.51
CDH6P55285 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CDH6P55285 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CDH6P55285 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
CDH6P55285 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
CDH6P55285 AC015813.7-201ENST00000623294 581 ntBASIC30.62■■■□□ 2.49
CDH6P55285 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CDH6P55285 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CDH6P55285 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
CDH6P55285 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
CDH6P55285 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CDH6P55285 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.47■■■□□ 2.47
CDH6P55285 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
CDH6P55285 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
CDH6P55285 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CDH6P55285 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CDH6P55285 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CDH6P55285 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.3■■■□□ 2.44
CDH6P55285 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
CDH6P55285 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CDH6P55285 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.26■■■□□ 2.43
CDH6P55285 AC145285.7-201ENST00000614819 1539 ntBASIC30.22■■■□□ 2.43
CDH6P55285 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
CDH6P55285 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.15■■■□□ 2.42
CDH6P55285 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CDH6P55285 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CDH6P55285 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CDH6P55285 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CDH6P55285 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CDH6P55285 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CDH6P55285 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.01■■■□□ 2.39
CDH6P55285 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
CDH6P55285 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
CDH6P55285 AC006077.2-201ENST00000623591 457 ntBASIC29.95■■■□□ 2.39
CDH6P55285 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CDH6P55285 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.93■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 276.6 ms