Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 KDM3A-205ENST00000441719 8741 ntTSL 29.72□□□□□ -0.852e-13■■■■■ 62.7
SUB1P53999 KDM3A-202ENST00000409064 4621 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.992e-13■■■■■ 62.7
SUB1P53999 KDM3A-210ENST00000470160 2955 ntTSL 25.62□□□□□ -1.512e-13■■■■■ 62.7
SUB1P53999 KDM3A-214ENST00000491383 4485 ntTSL 1 (best)4.49□□□□□ -1.692e-13■■■■■ 62.7
SUB1P53999 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.712e-11■■■■■ 62.7
SUB1P53999 SFXN4-207ENST00000484960 555 ntTSL 310.6□□□□□ -0.712e-11■■■■■ 62.7
SUB1P53999 SFXN4-208ENST00000490417 952 ntTSL 210.35□□□□□ -0.752e-11■■■■■ 62.7
SUB1P53999 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.167e-9■■■■■ 62.6
SUB1P53999 KIFAP3-206ENST00000538366 3159 ntTSL 2 BASIC9.06□□□□□ -0.967e-9■■■■■ 62.5
SUB1P53999 KIFAP3-201ENST00000361580 2957 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.027e-9■■■■■ 62.5
SUB1P53999 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC6.05□□□□□ -1.447e-9■■■■■ 62.5
SUB1P53999 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3□□□□□ -1.937e-9■■■■■ 62.5
SUB1P53999 SOD1-203ENST00000470944 1746 ntTSL 222.48■■□□□ 1.191e-13■■■■■ 62.4
SUB1P53999 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.631e-13■■■■■ 62.4
SUB1P53999 SOD1-202ENST00000389995 865 ntTSL 3 BASIC8.28□□□□□ -1.081e-13■■■■■ 62.4
SUB1P53999 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC5.41□□□□□ -1.543e-8■■■■■ 62.1
SUB1P53999 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.82□□□□□ -0.362e-12■■■■■ 62
SUB1P53999 WARS-238ENST00000557135 2080 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.152e-12■■■■■ 62
SUB1P53999 PARK7-207ENST00000469225 711 ntTSL 36.95□□□□□ -1.31e-7■■■■■ 62
SUB1P53999 PPID-201ENST00000307720 1823 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.135e-7■■■■■ 61.8
SUB1P53999 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.48□□□□□ -0.419e-61■■■■■ 61.6
SUB1P53999 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.31e-7■■■■■ 61.5
SUB1P53999 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.04□□□□□ -2.086e-12■■■■■ 61.5
SUB1P53999 LAMP1-203ENST00000472564 5242 ntTSL 215.3■□□□□ 0.045e-11■■■■■ 61.4
SUB1P53999 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.015e-11■■■■■ 61.4
SUB1P53999 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.527e-7■■■■■ 61.4
SUB1P53999 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC10.56□□□□□ -0.727e-7■■■■■ 61.4
SUB1P53999 NDUFC2-KCTD14-204ENST00000614236 386 ntTSL 5 BASIC8.8□□□□□ -17e-7■■■■■ 61.4
SUB1P53999 NDUFC2-KCTD14-201ENST00000528251 566 ntTSL 4 BASIC8.71□□□□□ -1.027e-7■■■■■ 61.4
SUB1P53999 NDUFC2-203ENST00000527806 1888 ntTSL 2 BASIC8.03□□□□□ -1.127e-7■■■■■ 61.4
SUB1P53999 NDUFC2-KCTD14-203ENST00000612612 530 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.157e-7■■■■■ 61.4
SUB1P53999 NDUFC2-202ENST00000525085 495 ntTSL 3 BASIC6.51□□□□□ -1.377e-7■■■■■ 61.4
SUB1P53999 NDUFC2-205ENST00000534029 422 ntTSL 2 BASIC6.39□□□□□ -1.397e-7■■■■■ 61.4
SUB1P53999 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.494e-13■■■■■ 61.3
SUB1P53999 MYH9-201ENST00000216181 7501 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.774e-13■■■■■ 61.3
SUB1P53999 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.814e-13■■■■■ 61.3
SUB1P53999 ACAA2-205ENST00000587994 1657 ntAPPRIS ALT1 TSL 5 BASIC9.86□□□□□ -0.834e-13■■■■■ 61.3
SUB1P53999 ACAA2-201ENST00000285093 3350 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.994e-13■■■■■ 61.3
SUB1P53999 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC5.51□□□□□ -1.534e-13■■■■■ 61.3
SUB1P53999 ACAA2-207ENST00000591171 1850 ntTSL 24.69□□□□□ -1.664e-13■■■■■ 61.3
SUB1P53999 MRPL58-203ENST00000583772 678 ntTSL 23.83□□□□□ -1.84e-13■■■■■ 61.3
SUB1P53999 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.143e-9■■■■■ 61.1
SUB1P53999 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.1□□□□□ -0.153e-9■■■■■ 61.1
SUB1P53999 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC13.1□□□□□ -0.313e-9■■■■■ 61.1
SUB1P53999 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC10.88□□□□□ -0.673e-9■■■■■ 61.1
SUB1P53999 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC10.55□□□□□ -0.723e-9■■■■■ 61.1
SUB1P53999 DIABLO-202ENST00000342392 1336 ntTSL 1 (best)9.73□□□□□ -0.853e-9■■■■■ 61.1
SUB1P53999 AC048338.1-201ENST00000535844 2748 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.983e-9■■■■■ 61.1
SUB1P53999 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.813e-10■■■■■ 61.1
SUB1P53999 RPL9-205ENST00000503277 769 ntTSL 27.17□□□□□ -1.263e-10■■■■■ 61.1
SUB1P53999 SERINC1-201ENST00000339697 3137 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.128e-9■■■■■ 61.1
SUB1P53999 TYMS-205ENST00000581920 886 ntTSL 55.33□□□□□ -1.562e-8■■■■■ 60.9
SUB1P53999 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.08□□□□□ -0.485e-23■■■■■ 60.9
SUB1P53999 SND1-214ENST00000489417 1447 ntTSL 216.53■□□□□ 0.244e-12■■■■■ 60.7
SUB1P53999 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.491e-7■■■■■ 60.6
SUB1P53999 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.881e-20■■■■■ 60.5
SUB1P53999 RPL9-211ENST00000514842 2153 ntTSL 59.34□□□□□ -0.911e-9■■■■■ 60.3
SUB1P53999 MTX2-202ENST00000420864 1592 ntTSL 1 (best)17.55■□□□□ 0.49e-9■■■■■ 60.3
SUB1P53999 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.229e-9■■■■■ 60.3
SUB1P53999 ABCE1-201ENST00000296577 3921 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.22e-9■■■■■ 60.3
SUB1P53999 SF3B3-206ENST00000565990 967 ntTSL 29.79□□□□□ -0.845e-9■■■■■ 60.1
SUB1P53999 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.061e-9■■■■■ 60
SUB1P53999 XPO5-207ENST00000455854 3629 ntTSL 26.83□□□□□ -1.321e-9■■■■■ 60
SUB1P53999 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.211e-7■■■■■ 59.8
SUB1P53999 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.78□□□□□ -0.522e-10■■■■■ 59.7
SUB1P53999 WARS-202ENST00000355338 3092 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.952e-10■■■■■ 59.7
SUB1P53999 WARS-201ENST00000344102 2690 ntTSL 5 BASIC7.99□□□□□ -1.132e-10■■■■■ 59.7
SUB1P53999 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.312e-10■■■■■ 59.7
SUB1P53999 SNRPB2-201ENST00000246071 2452 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.369e-16■■■■■ 59.6
SUB1P53999 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.99e-16■■■■■ 59.6
SUB1P53999 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.474e-9■■■■■ 59.5
SUB1P53999 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC10.32□□□□□ -0.767e-8■■■■■ 59.3
SUB1P53999 PSMA6-206ENST00000554541 925 ntTSL 28.63□□□□□ -1.037e-8■■■■■ 59.3
SUB1P53999 PSMA6-211ENST00000555764 1002 ntTSL 2 BASIC7.85□□□□□ -1.157e-8■■■■■ 59.3
SUB1P53999 PSMA6-202ENST00000540871 912 ntTSL 2 BASIC6.28□□□□□ -1.47e-8■■■■■ 59.3
SUB1P53999 PSMA6-209ENST00000554961 814 ntTSL 26.18□□□□□ -1.427e-8■■■■■ 59.3
SUB1P53999 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.597e-8■■■■■ 59.3
SUB1P53999 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.677e-8■■■■■ 59.3
SUB1P53999 SFT2D1-202ENST00000478705 659 ntTSL 211.97□□□□□ -0.492e-7■■■■■ 59.3
SUB1P53999 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.731e-11■■■■■ 59.1
SUB1P53999 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.771e-11■■■■■ 59.1
SUB1P53999 GNPDA1-202ENST00000500692 2319 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.051e-11■■■■■ 59.1
SUB1P53999 GNPDA1-201ENST00000311337 2273 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.181e-11■■■■■ 59.1
SUB1P53999 GNPDA1-212ENST00000513454 980 ntTSL 5 BASIC6.29□□□□□ -1.41e-11■■■■■ 59.1
SUB1P53999 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC10.99□□□□□ -0.655e-8■■■■■ 59
SUB1P53999 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC10.75□□□□□ -0.695e-8■■■■■ 59
SUB1P53999 CUL4A-212ENST00000617546 5666 ntTSL 1 (best) BASIC9.22□□□□□ -0.935e-8■■■■■ 59
SUB1P53999 CUL4A-201ENST00000326335 3705 ntTSL 1 (best) BASIC8.54□□□□□ -1.045e-8■■■■■ 59
SUB1P53999 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.911e-12■■■■■ 59
SUB1P53999 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.83■□□□□ 0.121e-12■■■■■ 59
SUB1P53999 GLYR1-207ENST00000587936 897 ntTSL 510.06□□□□□ -0.81e-12■■■■■ 59
SUB1P53999 GLYR1-201ENST00000321919 3772 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.841e-12■■■■■ 59
SUB1P53999 FCGR2A-210ENST00000483665 1495 ntTSL 29.77□□□□□ -0.851e-12■■■■■ 59
SUB1P53999 GLYR1-202ENST00000436648 3466 ntTSL 2 BASIC9.31□□□□□ -0.921e-12■■■■■ 59
SUB1P53999 TIMMDC1-208ENST00000494664 2394 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.951e-12■■■■■ 59
SUB1P53999 UBAP2-203ENST00000379235 2673 ntTSL 1 (best)8.96□□□□□ -0.981e-12■■■■■ 59
SUB1P53999 GLYR1-210ENST00000589389 3606 ntTSL 1 (best)8.84□□□□□ -0.991e-12■■■■■ 59
SUB1P53999 TIMMDC1-201ENST00000264244 1271 ntTSL 1 (best)8.62□□□□□ -1.031e-12■■■■■ 59
SUB1P53999 UBAP2-205ENST00000379239 2513 ntTSL 2 BASIC8.21□□□□□ -1.11e-12■■■■■ 59
SUB1P53999 GLYR1-209ENST00000588732 3527 ntTSL 1 (best)8.16□□□□□ -1.11e-12■■■■■ 59
Retrieved 100 of 11,644 protein–RNA pairs in 357.1 ms