RNA–Protein interactions for RNA: ENST00000617546.4

CUL4A-212, Transcript of cullin 4A, humanhuman

TSL 1 (best) BASIC

Gene CUL4A, Length 5,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL4A-212ENST00000617546 NISCHQ9Y2I1 1504 aa16.99■□□□□ 0.31
CUL4A-212ENST00000617546 PELP1Q8IZL8 1130 aaKnown RBP16.59■□□□□ 0.25
CUL4A-212ENST00000617546 MYT1Q01538 1121 aa16.49■□□□□ 0.23
CUL4A-212ENST00000617546 DCAF8L2P0C7V8 631 aa16.4■□□□□ 0.22
CUL4A-212ENST00000617546 SUPT5HO00267 1087 aaKnown RBP16.38■□□□□ 0.21
CUL4A-212ENST00000617546 ZEB1P37275 1124 aaPredicted RBP16.2■□□□□ 0.18
CUL4A-212ENST00000617546 CENPBP07199 599 aaPredicted RBP16.03■□□□□ 0.16
CUL4A-212ENST00000617546 SHROOM4Q9ULL8 1493 aa15.96■□□□□ 0.15
CUL4A-212ENST00000617546 PCGF6Q9BYE7 350 aa15.93■□□□□ 0.14
CUL4A-212ENST00000617546 HRCP23327 699 aa15.76■□□□□ 0.11
CUL4A-212ENST00000617546 CCER1Q8TC90 406 aaPredicted RBP15.69■□□□□ 0.1
CUL4A-212ENST00000617546 APLP2Q06481 763 aa15.64■□□□□ 0.09
CUL4A-212ENST00000617546 ERICH6Q7L0X2 663 aa15.56■□□□□ 0.08
CUL4A-212ENST00000617546 TRIM26Q12899 539 aaPredicted RBP15.54■□□□□ 0.08
CUL4A-212ENST00000617546 TRIM41Q8WV44 630 aa15.37■□□□□ 0.05
CUL4A-212ENST00000617546 EHMT2Q96KQ7 1210 aa15.35■□□□□ 0.05
CUL4A-212ENST00000617546 NEFLP07196 543 aa15.35■□□□□ 0.05
CUL4A-212ENST00000617546 FAM9AQ8IZU1 332 aaPredicted RBP15.29■□□□□ 0.04
CUL4A-212ENST00000617546 CHIC1Q5VXU3 224 aa15.15■□□□□ 0.02
CUL4A-212ENST00000617546 YTHDC1Q96MU7 727 aaKnown RBP15.11■□□□□ 0.01
CUL4A-212ENST00000617546 TTBK1Q5TCY1 1321 aaPredicted RBP15.08■□□□□ 0
CUL4A-212ENST00000617546 PPARGC1BQ86YN6 1023 aaKnown RBP14.98□□□□□ -0.01
CUL4A-212ENST00000617546 UBTFP17480 764 aaKnown RBP14.97□□□□□ -0.01
CUL4A-212ENST00000617546 DIEXFQ68CQ4 756 aaKnown RBP14.97□□□□□ -0.01
CUL4A-212ENST00000617546 CLSPNQ9HAW4 1339 aa14.9□□□□□ -0.02
CUL4A-212ENST00000617546 ACIN1Q9UKV3 1341 aaKnown RBP14.84□□□□□ -0.03
CUL4A-212ENST00000617546 LOC105371045A0A1W2PR82 267 aa14.83□□□□□ -0.03
CUL4A-212ENST00000617546 GTF3C3Q9Y5Q9 886 aa14.82□□□□□ -0.04
CUL4A-212ENST00000617546 DCAF1Q9Y4B6 1507 aa14.8□□□□□ -0.04
CUL4A-212ENST00000617546 DAXXQ9UER7 740 aaPredicted RBP14.75□□□□□ -0.05
CUL4A-212ENST00000617546 RTL5Q5HYW3 569 aaPredicted RBP14.73□□□□□ -0.05
CUL4A-212ENST00000617546 ZNF316A6NFI3 1004 aaPredicted RBP14.67□□□□□ -0.06
CUL4A-212ENST00000617546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.66□□□□□ -0.06
CUL4A-212ENST00000617546 MYT1LQ9UL68 1186 aa14.64□□□□□ -0.07
CUL4A-212ENST00000617546 RANGAP1P46060 587 aaPredicted RBP14.62□□□□□ -0.07
CUL4A-212ENST00000617546 HNRNPUL2Q1KMD3 747 aaKnown RBP14.57□□□□□ -0.08
CUL4A-212ENST00000617546 CDK11AQ9UQ88 783 aaPredicted RBP14.55□□□□□ -0.08
CUL4A-212ENST00000617546 ATP1B4Q9UN42 357 aaPredicted RBP14.54□□□□□ -0.08
CUL4A-212ENST00000617546 ANP32CO43423 234 aa14.43□□□□□ -0.1
CUL4A-212ENST00000617546 SCAF1Q9H7N4 1312 aaKnown RBP14.42□□□□□ -0.1
CUL4A-212ENST00000617546 CCDC180Q9P1Z9 1646 aa14.38□□□□□ -0.11
CUL4A-212ENST00000617546 ITGAEP38570 1179 aa14.34□□□□□ -0.11
CUL4A-212ENST00000617546 NEUROD1Q13562 356 aa14.32□□□□□ -0.12
CUL4A-212ENST00000617546 ANP32AP39687 249 aaKnown RBP14.3□□□□□ -0.12
CUL4A-212ENST00000617546 BCANQ96GW7 911 aa14.29□□□□□ -0.12
CUL4A-212ENST00000617546 ZCCHC6Q5VYS8 1495 aaKnown RBP14.23□□□□□ -0.13
CUL4A-212ENST00000617546 GLIPR1L2Q4G1C9 344 aa14.19□□□□□ -0.14
CUL4A-212ENST00000617546 POLR3GLQ9BT43 218 aa14.17□□□□□ -0.14
CUL4A-212ENST00000617546 ANP32EQ9BTT0 268 aa14.17□□□□□ -0.14
CUL4A-212ENST00000617546 FKBP8Q14318 412 aa14.15□□□□□ -0.14
CUL4A-212ENST00000617546 CSRNP3Q8WYN3 585 aa14.14□□□□□ -0.15
CUL4A-212ENST00000617546 FAM50AQ14320 339 aaKnown RBP14.13□□□□□ -0.15
CUL4A-212ENST00000617546 MYO15BQ96JP2 1530 aa14.05□□□□□ -0.16
CUL4A-212ENST00000617546 TRIM52Q96A61 297 aa14.01□□□□□ -0.17
CUL4A-212ENST00000617546 MIER1Q8N108 512 aa14.01□□□□□ -0.17
CUL4A-212ENST00000617546 ZBTB47Q9UFB7 747 aaPredicted RBP14□□□□□ -0.17
CUL4A-212ENST00000617546 EEA1Q15075 1411 aa13.99□□□□□ -0.17
CUL4A-212ENST00000617546 TONSLQ96HA7 1378 aa13.95□□□□□ -0.18
CUL4A-212ENST00000617546 ABCC9O60706 1549 aa13.94□□□□□ -0.18
CUL4A-212ENST00000617546 ANP32BQ92688 251 aaKnown RBP13.93□□□□□ -0.18
CUL4A-212ENST00000617546 EIF5BO60841 1220 aaKnown RBP13.93□□□□□ -0.18
CUL4A-212ENST00000617546 HNRNPUQ00839 825 aaKnown RBP eCLIP13.93□□□□□ -0.18
CUL4A-212ENST00000617546 DDRGK1Q96HY6 314 aa13.89□□□□□ -0.19
CUL4A-212ENST00000617546 CNGB1Q14028 1251 aaPredicted RBP13.89□□□□□ -0.19
CUL4A-212ENST00000617546 CCDC136Q96JN2 1154 aa13.86□□□□□ -0.19
CUL4A-212ENST00000617546 DDX10Q13206 875 aaKnown RBP13.86□□□□□ -0.19
CUL4A-212ENST00000617546 UPF2Q9HAU5 1272 aaKnown RBP13.86□□□□□ -0.19
CUL4A-212ENST00000617546 NPM2Q86SE8 214 aaKnown RBP13.85□□□□□ -0.19
CUL4A-212ENST00000617546 CANXP27824 592 aaKnown RBP13.83□□□□□ -0.2
CUL4A-212ENST00000617546 BCL11AQ9H165 835 aa13.82□□□□□ -0.2
CUL4A-212ENST00000617546 PPM1GO15355 546 aaPredicted RBP13.81□□□□□ -0.2
CUL4A-212ENST00000617546 SUPT16HQ9Y5B9 1047 aaKnown RBP13.81□□□□□ -0.2
CUL4A-212ENST00000617546 GOLGA3Q08378 1498 aa13.81□□□□□ -0.2
CUL4A-212ENST00000617546 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.81□□□□□ -0.2
CUL4A-212ENST00000617546 NBR1Q14596 966 aa13.8□□□□□ -0.2
CUL4A-212ENST00000617546 TNIKQ9UKE5 1360 aa13.79□□□□□ -0.2
CUL4A-212ENST00000617546 CEP162Q5TB80 1403 aa13.79□□□□□ -0.2
CUL4A-212ENST00000617546 CLIP1P30622 1438 aa13.78□□□□□ -0.2
CUL4A-212ENST00000617546 ERICH6BQ5W0A0 696 aa13.78□□□□□ -0.2
CUL4A-212ENST00000617546 PPP4R2Q9NY27 417 aa13.75□□□□□ -0.21
CUL4A-212ENST00000617546 FAM9BQ8IZU0 186 aa13.72□□□□□ -0.21
CUL4A-212ENST00000617546 TIMELESSQ9UNS1 1208 aa13.72□□□□□ -0.21
CUL4A-212ENST00000617546 ZNF326Q5BKZ1 582 aaKnown RBP13.71□□□□□ -0.21
CUL4A-212ENST00000617546 SCRIBQ14160 1630 aa13.71□□□□□ -0.22
CUL4A-212ENST00000617546 MRS2Q9HD23 443 aa13.7□□□□□ -0.22
CUL4A-212ENST00000617546 NOP58Q9Y2X3 529 aaKnown RBP13.7□□□□□ -0.22
CUL4A-212ENST00000617546 SLC4A1APQ9BWU0 796 aaKnown RBP13.7□□□□□ -0.22
CUL4A-212ENST00000617546 BECN1Q14457 450 aa13.7□□□□□ -0.22
CUL4A-212ENST00000617546 CCER2I3L3R5 266 aa13.7□□□□□ -0.22
CUL4A-212ENST00000617546 TMC1Q8TDI8 760 aa13.68□□□□□ -0.22
CUL4A-212ENST00000617546 RSF1Q96T23 1441 aaPredicted RBP13.68□□□□□ -0.22
CUL4A-212ENST00000617546 RB1CC1Q8TDY2 1594 aa13.68□□□□□ -0.22
CUL4A-212ENST00000617546 NEFMP07197 916 aa13.66□□□□□ -0.22
CUL4A-212ENST00000617546 CEP164Q9UPV0 1460 aa13.66□□□□□ -0.22
CUL4A-212ENST00000617546 EIF4G2P78344 907 aaKnown RBP eCLIP13.66□□□□□ -0.223e-7■■■■□ 20.7
CUL4A-212ENST00000617546 HSP90AA1P07900 732 aaKnown RBP13.64□□□□□ -0.23
CUL4A-212ENST00000617546 RBM19Q9Y4C8 960 aaKnown RBP13.61□□□□□ -0.23
CUL4A-212ENST00000617546 DEKP35659 375 aaKnown RBP13.58□□□□□ -0.23
CUL4A-212ENST00000617546 TRIM44Q96DX7 344 aaPredicted RBP13.58□□□□□ -0.24
CUL4A-212ENST00000617546 TNNT2P45379 298 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms