RNA–Protein interactions for RNA: ENST00000326335.8

CUL4A-201, Transcript of cullin 4A, humanhuman

TSL 1 (best) BASIC

Gene CUL4A, Length 3,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL4A-201ENST00000326335 NISCHQ9Y2I1 1504 aa21.74■■□□□ 1.07
CUL4A-201ENST00000326335 SHROOM4Q9ULL8 1493 aa19.49■□□□□ 0.71
CUL4A-201ENST00000326335 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
CUL4A-201ENST00000326335 SUPT5HO00267 1087 aaKnown RBP19.06■□□□□ 0.64
CUL4A-201ENST00000326335 CCDC180Q9P1Z9 1646 aa18.4■□□□□ 0.54
CUL4A-201ENST00000326335 ZCCHC6Q5VYS8 1495 aaKnown RBP18.23■□□□□ 0.51
CUL4A-201ENST00000326335 EHMT2Q96KQ7 1210 aa18.07■□□□□ 0.48
CUL4A-201ENST00000326335 ABCC9O60706 1549 aa18■□□□□ 0.47
CUL4A-201ENST00000326335 CHIC1Q5VXU3 224 aa17.9■□□□□ 0.46
CUL4A-201ENST00000326335 FAM9AQ8IZU1 332 aaPredicted RBP17.8■□□□□ 0.44
CUL4A-201ENST00000326335 LOC105371045A0A1W2PR82 267 aa17.78■□□□□ 0.44
CUL4A-201ENST00000326335 SCRIBQ14160 1630 aa17.72■□□□□ 0.43
CUL4A-201ENST00000326335 MYO15BQ96JP2 1530 aa17.69■□□□□ 0.42
CUL4A-201ENST00000326335 DCAF1Q9Y4B6 1507 aa17.6■□□□□ 0.41
CUL4A-201ENST00000326335 PCGF6Q9BYE7 350 aa17.59■□□□□ 0.41
CUL4A-201ENST00000326335 PABPN1Q86U42 306 aaKnown RBP eCLIP17.5■□□□□ 0.39
CUL4A-201ENST00000326335 TRIM41Q8WV44 630 aa17.47■□□□□ 0.39
CUL4A-201ENST00000326335 PPARGC1BQ86YN6 1023 aaKnown RBP17.39■□□□□ 0.37
CUL4A-201ENST00000326335 TTBK1Q5TCY1 1321 aaPredicted RBP17.33■□□□□ 0.37
CUL4A-201ENST00000326335 CECR2Q9BXF3 1484 aa17.33■□□□□ 0.36
CUL4A-201ENST00000326335 RSF1Q96T23 1441 aaPredicted RBP17.32■□□□□ 0.36
CUL4A-201ENST00000326335 RB1CC1Q8TDY2 1594 aa17.15■□□□□ 0.34
CUL4A-201ENST00000326335 RANGAP1P46060 587 aaPredicted RBP17.1■□□□□ 0.33
CUL4A-201ENST00000326335 MROH2BQ7Z745 1585 aa17.1■□□□□ 0.33
CUL4A-201ENST00000326335 NACADO15069 1562 aa17.02■□□□□ 0.32
CUL4A-201ENST00000326335 WIZO95785 1651 aa16.99■□□□□ 0.31
CUL4A-201ENST00000326335 HRCP23327 699 aa16.98■□□□□ 0.31
CUL4A-201ENST00000326335 UBTFP17480 764 aaKnown RBP16.85■□□□□ 0.29
CUL4A-201ENST00000326335 TRIM26Q12899 539 aaPredicted RBP16.84■□□□□ 0.29
CUL4A-201ENST00000326335 ABCC8Q09428 1581 aa16.76■□□□□ 0.27
CUL4A-201ENST00000326335 BAZ1AQ9NRL2 1556 aaPredicted RBP16.68■□□□□ 0.26
CUL4A-201ENST00000326335 CCDC88BA6NC98 1476 aa16.66■□□□□ 0.26
CUL4A-201ENST00000326335 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.66■□□□□ 0.26
CUL4A-201ENST00000326335 SOGA1O94964 1423 aa16.61■□□□□ 0.25
CUL4A-201ENST00000326335 SMARCA4P51532 1647 aa16.56■□□□□ 0.24
CUL4A-201ENST00000326335 UNC13AQ9UPW8 1703 aa16.56■□□□□ 0.24
CUL4A-201ENST00000326335 RUSC2Q8N2Y8 1516 aa16.55■□□□□ 0.24
CUL4A-201ENST00000326335 CCER1Q8TC90 406 aaPredicted RBP16.54■□□□□ 0.24
CUL4A-201ENST00000326335 CSRNP3Q8WYN3 585 aa16.52■□□□□ 0.24
CUL4A-201ENST00000326335 HNRNPUL2Q1KMD3 747 aaKnown RBP16.46■□□□□ 0.23
CUL4A-201ENST00000326335 BICRAQ9NZM4 1560 aa16.45■□□□□ 0.22
CUL4A-201ENST00000326335 TOP2AP11388 1531 aaKnown RBP16.45■□□□□ 0.22
CUL4A-201ENST00000326335 SMARCA2P51531 1590 aa16.43■□□□□ 0.22
CUL4A-201ENST00000326335 BAZ1BQ9UIG0 1483 aaKnown RBP16.4■□□□□ 0.22
CUL4A-201ENST00000326335 WRNQ14191 1432 aaPredicted RBP eCLIP16.37■□□□□ 0.211e-6■■■■■ 58.5
CUL4A-201ENST00000326335 APLP2Q06481 763 aa16.35■□□□□ 0.21
CUL4A-201ENST00000326335 ATP1B4Q9UN42 357 aaPredicted RBP16.35■□□□□ 0.21
CUL4A-201ENST00000326335 ATAD2BQ9ULI0 1458 aa16.33■□□□□ 0.2
CUL4A-201ENST00000326335 CEP162Q5TB80 1403 aa16.33■□□□□ 0.2
CUL4A-201ENST00000326335 ITGAEP38570 1179 aa16.31■□□□□ 0.2
CUL4A-201ENST00000326335 P3H3Q8IVL6 736 aa16.24■□□□□ 0.19
CUL4A-201ENST00000326335 ZEB1P37275 1124 aaPredicted RBP16.19■□□□□ 0.18
CUL4A-201ENST00000326335 EIF4G1Q04637 1599 aaKnown RBP16.17■□□□□ 0.18
CUL4A-201ENST00000326335 SYNJ1O43426 1573 aa16.16■□□□□ 0.18
CUL4A-201ENST00000326335 DNAJC5BQ9UF47 199 aa16.15■□□□□ 0.18
CUL4A-201ENST00000326335 TNIKQ9UKE5 1360 aa16.12■□□□□ 0.17
CUL4A-201ENST00000326335 RAPGEF2Q9Y4G8 1499 aa16.11■□□□□ 0.17
CUL4A-201ENST00000326335 CLIP1P30622 1438 aa16.11■□□□□ 0.17
CUL4A-201ENST00000326335 GOLGA3Q08378 1498 aa16.1■□□□□ 0.17
CUL4A-201ENST00000326335 PEG3Q9GZU2 1588 aa16.07■□□□□ 0.16
CUL4A-201ENST00000326335 YTHDC1Q96MU7 727 aaKnown RBP16.05■□□□□ 0.16
CUL4A-201ENST00000326335 ARID3CA6NKF2 412 aa16.02■□□□□ 0.16
CUL4A-201ENST00000326335 KANK4Q5T7N3 995 aaPredicted RBP16.01■□□□□ 0.15
CUL4A-201ENST00000326335 CEP164Q9UPV0 1460 aa15.99■□□□□ 0.15
CUL4A-201ENST00000326335 EEA1Q15075 1411 aa15.96■□□□□ 0.15
CUL4A-201ENST00000326335 DIEXFQ68CQ4 756 aaKnown RBP15.93■□□□□ 0.14
CUL4A-201ENST00000326335 FAM50AQ14320 339 aaKnown RBP15.9■□□□□ 0.14
CUL4A-201ENST00000326335 CUX2O14529 1486 aa15.9■□□□□ 0.14
CUL4A-201ENST00000326335 NESP48681 1621 aa15.89■□□□□ 0.13
CUL4A-201ENST00000326335 NCAPD3P42695 1498 aa15.88■□□□□ 0.13
CUL4A-201ENST00000326335 CUX1P39880 1505 aa15.86■□□□□ 0.13
CUL4A-201ENST00000326335 KIF27Q86VH2 1401 aa15.85■□□□□ 0.13
CUL4A-201ENST00000326335 VPS8Q8N3P4 1428 aa15.82■□□□□ 0.12
CUL4A-201ENST00000326335 CADPSQ9ULU8 1353 aa15.82■□□□□ 0.12
CUL4A-201ENST00000326335 RAD54L2Q9Y4B4 1467 aa15.79■□□□□ 0.12
CUL4A-201ENST00000326335 CC2D2AQ9P2K1 1620 aa15.79■□□□□ 0.12
CUL4A-201ENST00000326335 TDRD9Q8NDG6 1382 aaKnown RBP15.78■□□□□ 0.12
CUL4A-201ENST00000326335 NEUROD1Q13562 356 aa15.78■□□□□ 0.12
CUL4A-201ENST00000326335 TOP2BQ02880 1626 aa15.76■□□□□ 0.11
CUL4A-201ENST00000326335 CFTRP13569 1480 aa15.76■□□□□ 0.11
CUL4A-201ENST00000326335 CARMIL1Q5VZK9 1371 aa15.75■□□□□ 0.11
CUL4A-201ENST00000326335 KIF21BO75037 1637 aa15.75■□□□□ 0.11
CUL4A-201ENST00000326335 ARAP1Q96P48 1450 aa15.73■□□□□ 0.11
CUL4A-201ENST00000326335 FBLN2P98095 1184 aa15.73■□□□□ 0.11
CUL4A-201ENST00000326335 FGD5Q6ZNL6 1462 aa15.73■□□□□ 0.11
CUL4A-201ENST00000326335 IGF1RP08069 1367 aa15.72■□□□□ 0.11
CUL4A-201ENST00000326335 ZNF316A6NFI3 1004 aaPredicted RBP15.72■□□□□ 0.11
CUL4A-201ENST00000326335 HIRIP3Q9BW71 556 aaPredicted RBP15.71■□□□□ 0.11
CUL4A-201ENST00000326335 FANCD2Q9BXW9 1451 aa15.7■□□□□ 0.1
CUL4A-201ENST00000326335 SCAF1Q9H7N4 1312 aaKnown RBP15.7■□□□□ 0.1
CUL4A-201ENST00000326335 HMGXB3Q12766 1538 aa15.69■□□□□ 0.1
CUL4A-201ENST00000326335 MIER1Q8N108 512 aa15.66■□□□□ 0.1
CUL4A-201ENST00000326335 PRXQ9BXM0 1461 aa15.66■□□□□ 0.1
CUL4A-201ENST00000326335 FHOD3Q2V2M9 1422 aa15.64■□□□□ 0.09
CUL4A-201ENST00000326335 CHIC2Q9UKJ5 165 aa15.62■□□□□ 0.09
CUL4A-201ENST00000326335 SIN3AQ96ST3 1273 aa15.61■□□□□ 0.09
CUL4A-201ENST00000326335 ARHGAP35Q9NRY4 1499 aa15.6■□□□□ 0.09
CUL4A-201ENST00000326335 GTF3C3Q9Y5Q9 886 aa15.58■□□□□ 0.08
CUL4A-201ENST00000326335 BIVM-ERCC5R4GMW8 1640 aa15.56■□□□□ 0.08
CUL4A-201ENST00000326335 CNGB1Q14028 1251 aaPredicted RBP15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms