Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DUX4L10-201ENST00000622460 1267 ntBASIC23.78■■□□□ 1.4
SOX3P41225 DUX4L25-201ENST00000624915 1269 ntBASIC23.78■■□□□ 1.4
SOX3P41225 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SOX3P41225 AC135983.2-203ENST00000454486 1613 ntBASIC23.77■■□□□ 1.4
SOX3P41225 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SOX3P41225 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
SOX3P41225 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SOX3P41225 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.77■■□□□ 1.4
SOX3P41225 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SOX3P41225 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
SOX3P41225 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SOX3P41225 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SOX3P41225 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SOX3P41225 WHAMMP2-203ENST00000563942 1603 ntBASIC23.76■■□□□ 1.39
SOX3P41225 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SOX3P41225 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SOX3P41225 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SOX3P41225 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SOX3P41225 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SOX3P41225 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.75■■□□□ 1.39
SOX3P41225 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
SOX3P41225 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SOX3P41225 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SOX3P41225 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SOX3P41225 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.74■■□□□ 1.39
SOX3P41225 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SOX3P41225 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.73■■□□□ 1.39
SOX3P41225 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
SOX3P41225 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SOX3P41225 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
SOX3P41225 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
SOX3P41225 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SOX3P41225 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SOX3P41225 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.7■■□□□ 1.39
SOX3P41225 MIR639-201ENST00000384974 98 ntBASIC23.7■■□□□ 1.38
SOX3P41225 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.7■■□□□ 1.38
SOX3P41225 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SOX3P41225 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
SOX3P41225 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SOX3P41225 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
SOX3P41225 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SOX3P41225 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SOX3P41225 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.68■■□□□ 1.38
SOX3P41225 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.67■■□□□ 1.38
SOX3P41225 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SOX3P41225 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SOX3P41225 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
SOX3P41225 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SOX3P41225 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SOX3P41225 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SOX3P41225 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.65■■□□□ 1.38
SOX3P41225 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.65■■□□□ 1.38
SOX3P41225 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SOX3P41225 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SOX3P41225 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
SOX3P41225 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.64■■□□□ 1.37
SOX3P41225 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
SOX3P41225 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.64■■□□□ 1.37
SOX3P41225 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SOX3P41225 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SOX3P41225 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.63■■□□□ 1.37
SOX3P41225 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.63■■□□□ 1.37
SOX3P41225 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SOX3P41225 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
SOX3P41225 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
SOX3P41225 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
SOX3P41225 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SOX3P41225 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
SOX3P41225 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.62■■□□□ 1.37
SOX3P41225 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SOX3P41225 MIR4449-201ENST00000578365 66 ntBASIC23.61■■□□□ 1.37
SOX3P41225 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
SOX3P41225 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SOX3P41225 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.6■■□□□ 1.37
SOX3P41225 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.6■■□□□ 1.37
SOX3P41225 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SOX3P41225 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SOX3P41225 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.59■■□□□ 1.37
SOX3P41225 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SOX3P41225 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SOX3P41225 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SOX3P41225 AP004833.2-201ENST00000532228 1454 ntBASIC23.58■■□□□ 1.37
SOX3P41225 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
SOX3P41225 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.57■■□□□ 1.36
SOX3P41225 AL139393.2-201ENST00000608721 2025 ntBASIC23.57■■□□□ 1.36
SOX3P41225 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.57■■□□□ 1.36
SOX3P41225 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SOX3P41225 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SOX3P41225 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SOX3P41225 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SOX3P41225 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SOX3P41225 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SOX3P41225 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
SOX3P41225 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SOX3P41225 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.55■■□□□ 1.36
SOX3P41225 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.55■■□□□ 1.36
SOX3P41225 AL121749.1-202ENST00000609313 2153 ntBASIC23.54■■□□□ 1.36
SOX3P41225 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
SOX3P41225 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SOX3P41225 DRD5P2-201ENST00000421395 2012 ntBASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms