Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA1O95477 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.28■■□□□ 1
ABCA1O95477 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.27■■□□□ 1
ABCA1O95477 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC21.27■■□□□ 1
ABCA1O95477 WHAMMP2-203ENST00000563942 1603 ntBASIC21.27■□□□□ 0.99
ABCA1O95477 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.26■□□□□ 0.99
ABCA1O95477 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA1O95477 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.26■□□□□ 0.99
ABCA1O95477 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.26■□□□□ 0.99
ABCA1O95477 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA1O95477 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA1O95477 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA1O95477 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA1O95477 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
ABCA1O95477 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.24■□□□□ 0.99
ABCA1O95477 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.24■□□□□ 0.99
ABCA1O95477 RARRES2P1-201ENST00000474487 481 ntBASIC21.24■□□□□ 0.99
ABCA1O95477 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ABCA1O95477 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.23■□□□□ 0.99
ABCA1O95477 AC092296.2-201ENST00000589470 999 ntBASIC21.22■□□□□ 0.99
ABCA1O95477 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
ABCA1O95477 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.22■□□□□ 0.99
ABCA1O95477 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA1O95477 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA1O95477 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.21■□□□□ 0.99
ABCA1O95477 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA1O95477 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA1O95477 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
ABCA1O95477 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA1O95477 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA1O95477 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA1O95477 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA1O95477 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.19■□□□□ 0.98
ABCA1O95477 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA1O95477 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA1O95477 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA1O95477 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.18■□□□□ 0.98
ABCA1O95477 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.18■□□□□ 0.98
ABCA1O95477 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
ABCA1O95477 U85056.1-201ENST00000616429 682 ntBASIC21.18■□□□□ 0.98
ABCA1O95477 AC004987.1-201ENST00000428627 508 ntBASIC21.17■□□□□ 0.98
ABCA1O95477 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA1O95477 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA1O95477 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA1O95477 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
ABCA1O95477 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ABCA1O95477 ATP5G2P3-201ENST00000429083 425 ntBASIC21.16■□□□□ 0.98
ABCA1O95477 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.16■□□□□ 0.98
ABCA1O95477 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
ABCA1O95477 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ABCA1O95477 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ABCA1O95477 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ABCA1O95477 AC127502.1-201ENST00000399971 1502 ntBASIC21.16■□□□□ 0.98
ABCA1O95477 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
ABCA1O95477 AC139426.1-201ENST00000568218 2529 ntBASIC21.15■□□□□ 0.98
ABCA1O95477 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ABCA1O95477 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ABCA1O95477 MIR219A2-201ENST00000608502 1504 ntBASIC21.15■□□□□ 0.98
ABCA1O95477 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.15■□□□□ 0.98
ABCA1O95477 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
ABCA1O95477 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
ABCA1O95477 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ABCA1O95477 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
ABCA1O95477 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
ABCA1O95477 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ABCA1O95477 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ABCA1O95477 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.12■□□□□ 0.97
ABCA1O95477 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.12■□□□□ 0.97
ABCA1O95477 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ABCA1O95477 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC21.11■□□□□ 0.97
ABCA1O95477 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.11■□□□□ 0.97
ABCA1O95477 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.11■□□□□ 0.97
ABCA1O95477 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
ABCA1O95477 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ABCA1O95477 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ABCA1O95477 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ABCA1O95477 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
ABCA1O95477 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
ABCA1O95477 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.1■□□□□ 0.97
ABCA1O95477 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ABCA1O95477 AC110285.7-201ENST00000624417 1536 ntBASIC21.09■□□□□ 0.97
ABCA1O95477 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ABCA1O95477 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.09■□□□□ 0.97
ABCA1O95477 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
ABCA1O95477 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ABCA1O95477 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ABCA1O95477 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.08■□□□□ 0.96
ABCA1O95477 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ABCA1O95477 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
ABCA1O95477 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ABCA1O95477 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.07■□□□□ 0.96
ABCA1O95477 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ABCA1O95477 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ABCA1O95477 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ABCA1O95477 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.06■□□□□ 0.96
ABCA1O95477 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.06■□□□□ 0.96
ABCA1O95477 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ABCA1O95477 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ABCA1O95477 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.06■□□□□ 0.96
ABCA1O95477 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms