Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 C12orf76-206ENST00000548936 562 ntTSL 414.2□□□□□ -0.143e-6■■■■■ 137.9
SF3B1O75533 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.143e-6■■■■■ 137.9
SF3B1O75533 RHOH-219ENST00000614836 2114 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.143e-6■■■■■ 137.9
SF3B1O75533 NUMB-230ENST00000557774 847 ntTSL 214.18□□□□□ -0.142e-6■■■■■ 137.9
SF3B1O75533 ZNF720-207ENST00000531864 1670 ntTSL 214.18□□□□□ -0.143e-6■■■■■ 137.9
SF3B1O75533 PRKACA-203ENST00000536649 1524 ntTSL 214.17□□□□□ -0.143e-6■■■■■ 137.9
SF3B1O75533 PCTP-206ENST00000573500 919 ntTSL 3 BASIC14.16□□□□□ -0.143e-6■■■■■ 137.9
SF3B1O75533 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.16□□□□□ -0.143e-6■■■■■ 137.9
SF3B1O75533 ATL2-215ENST00000486927 553 ntTSL 414.15□□□□□ -0.142e-11■■■■■ 137.9
SF3B1O75533 PRDM7-204ENST00000568473 706 ntTSL 514.15□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 ZNF664-203ENST00000537532 592 ntTSL 414.15□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 MIR497HG-202ENST00000572453 3838 ntBASIC14.14□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC14.12□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 TPCN1-218ENST00000551127 2975 ntTSL 214.09□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC14.09□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.09□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.153e-6■■■■■ 137.9
SF3B1O75533 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 RNF4-206ENST00000504782 614 ntTSL 214.06□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC14.06□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 GGCX-210ENST00000496962 684 ntTSL 214.06□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 AC008750.5-201ENST00000595500 473 ntTSL 2 BASIC14.06□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 ACAD8-204ENST00000524502 1487 ntTSL 314.06□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 ZDHHC14-205ENST00000422910 2883 ntTSL 214.06□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 CENPT-232ENST00000569094 561 ntTSL 514.05□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 TRAPPC4-205ENST00000525079 768 ntTSL 314.04□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 AFG3L1P-202ENST00000388970 1466 ntTSL 1 (best)14.03□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 CENPT-217ENST00000565132 437 ntTSL 414.03□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC14.03□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 ADGRD1-204ENST00000446583 5529 ntTSL 514.02□□□□□ -0.163e-6■■■■■ 137.9
SF3B1O75533 SH3BP1-206ENST00000469947 2612 ntTSL 214.01□□□□□ -0.173e-6■■■■■ 137.9
SF3B1O75533 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC14□□□□□ -0.173e-6■■■■■ 137.9
SF3B1O75533 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.173e-6■■■■■ 137.9
SF3B1O75533 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC13.96□□□□□ -0.173e-6■■■■■ 137.9
SF3B1O75533 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.96□□□□□ -0.173e-6■■■■■ 137.9
SF3B1O75533 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC13.95□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 OSBP2-206ENST00000431368 3050 ntTSL 513.95□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC13.94□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 PPP1R8-204ENST00000431586 1029 ntTSL 313.93□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 CENPT-230ENST00000568765 544 ntTSL 413.92□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 TMEM234-205ENST00000466796 2736 ntTSL 213.92□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 VRK3-205ENST00000593919 1979 ntTSL 1 (best) BASIC13.9□□□□□ -0.183e-6■■■■■ 137.9
SF3B1O75533 CLIP2-209ENST00000493166 561 ntTSL 413.9□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 FAM92A-201ENST00000359421 1179 ntTSL 313.89□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 ATG9B-202ENST00000466157 610 ntTSL 513.88□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 PHB-206ENST00000504124 796 ntTSL 513.87□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 PLAUR-207ENST00000593939 897 ntTSL 313.87□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC13.86□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 RHOH-222ENST00000617441 1872 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 HAUS7-205ENST00000460898 491 ntTSL 313.86□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 DNAJC27-203ENST00000468467 561 ntTSL 413.86□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 ACAP1-212ENST00000576628 761 ntTSL 213.86□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 PLAUR-206ENST00000593714 555 ntTSL 513.85□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 HECTD1-213ENST00000556224 3267 ntTSL 513.85□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 EMP3-204ENST00000596315 761 ntTSL 2 BASIC13.84□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC13.84□□□□□ -0.193e-6■■■■■ 137.9
SF3B1O75533 SH3TC1-225ENST00000515682 4293 ntTSL 213.82□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 NBEAL1-210ENST00000497505 2372 ntTSL 513.82□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-216ENST00000589810 1058 ntTSL 1 (best)13.82□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC13.82□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 AGBL5-204ENST00000437006 489 ntTSL 213.82□□□□□ -0.22e-11■■■■■ 137.9
SF3B1O75533 N4BP1-202ENST00000564124 2485 ntTSL 513.82□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 LMF1-206ENST00000565198 604 ntTSL 413.8□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 MTG2-205ENST00000466933 667 ntTSL 313.8□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 CALU-202ENST00000449187 2438 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.23e-6■■■■■ 137.9
SF3B1O75533 TTC27-206ENST00000454690 500 ntTSL 313.77□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 TMEM39B-209ENST00000498613 854 ntTSL 313.77□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 RFC5-207ENST00000535092 574 ntTSL 413.77□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC13.76□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 BCO2-202ENST00000361053 1868 ntTSL 1 (best) BASIC13.76□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 TMEM39B-206ENST00000472503 950 ntTSL 313.75□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 GALE-206ENST00000456977 672 ntTSL 213.75□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 C17orf99-204ENST00000586246 371 ntTSL 513.75□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.74□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 AGBL5-207ENST00000453161 673 ntTSL 313.74□□□□□ -0.212e-11■■■■■ 137.9
SF3B1O75533 TBC1D9B-215ENST00000522180 562 ntTSL 413.74□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 ZNF142-207ENST00000450765 6028 ntTSL 1 (best)13.72□□□□□ -0.213e-6■■■■■ 137.9
SF3B1O75533 LANCL1-208ENST00000453956 590 ntTSL 413.7□□□□□ -0.223e-6■■■■■ 137.9
SF3B1O75533 ABCB8-204ENST00000462605 560 ntTSL 413.69□□□□□ -0.223e-6■■■■■ 137.9
SF3B1O75533 APBA2-208ENST00000558804 535 ntTSL 413.69□□□□□ -0.223e-6■■■■■ 137.9
SF3B1O75533 AFG3L1P-212ENST00000437774 3134 ntTSL 213.69□□□□□ -0.223e-6■■■■■ 137.9
SF3B1O75533 SMARCA4-216ENST00000591545 5193 ntTSL 213.69□□□□□ -0.224e-6■■■■■ 137.9
SF3B1O75533 SNX15-201ENST00000352068 771 ntTSL 5 BASIC13.68□□□□□ -0.225e-6■■■■■ 137.9
SF3B1O75533 PLAUR-216ENST00000602141 679 ntTSL 513.67□□□□□ -0.223e-6■■■■■ 137.9
SF3B1O75533 AL357060.2-202ENST00000606998 1959 ntTSL 2 BASIC13.67□□□□□ -0.223e-6■■■■■ 137.9
SF3B1O75533 MAPKAP1-218ENST00000496063 892 ntTSL 313.66□□□□□ -0.223e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1505.8 ms