RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 NISCHQ9Y2I1 1504 aa30.35■■■□□ 2.45
VRK3-205ENST00000593919 CCDC180Q9P1Z9 1646 aa26.58■■□□□ 1.85
VRK3-205ENST00000593919 ZCCHC6Q5VYS8 1495 aaKnown RBP25.47■■□□□ 1.67
VRK3-205ENST00000593919 ABCC9O60706 1549 aa25.25■■□□□ 1.63
VRK3-205ENST00000593919 DCAF1Q9Y4B6 1507 aa25.09■■□□□ 1.61
VRK3-205ENST00000593919 DCAF8L2P0C7V8 631 aa25.08■■□□□ 1.61
VRK3-205ENST00000593919 MYO15BQ96JP2 1530 aa24.86■■□□□ 1.57
VRK3-205ENST00000593919 NACADO15069 1562 aa24.76■■□□□ 1.55
VRK3-205ENST00000593919 SHROOM4Q9ULL8 1493 aa24.63■■□□□ 1.53
VRK3-205ENST00000593919 RB1CC1Q8TDY2 1594 aa24.6■■□□□ 1.53
VRK3-205ENST00000593919 SCRIBQ14160 1630 aa24.42■■□□□ 1.5
VRK3-205ENST00000593919 UNC13AQ9UPW8 1703 aa24.19■■□□□ 1.46
VRK3-205ENST00000593919 BICRAQ9NZM4 1560 aa23.88■■□□□ 1.41
VRK3-205ENST00000593919 PABPN1Q86U42 306 aaKnown RBP eCLIP23.76■■□□□ 1.39
VRK3-205ENST00000593919 CECR2Q9BXF3 1484 aa23.6■■□□□ 1.37
VRK3-205ENST00000593919 SUPT5HO00267 1087 aaKnown RBP23.59■■□□□ 1.37
VRK3-205ENST00000593919 RSF1Q96T23 1441 aaPredicted RBP23.46■■□□□ 1.35
VRK3-205ENST00000593919 BAZ1AQ9NRL2 1556 aaPredicted RBP23.45■■□□□ 1.35
VRK3-205ENST00000593919 MROH2BQ7Z745 1585 aa23.45■■□□□ 1.34
VRK3-205ENST00000593919 SMARCA4P51532 1647 aa23.39■■□□□ 1.34
VRK3-205ENST00000593919 WIZO95785 1651 aa23.28■■□□□ 1.32
VRK3-205ENST00000593919 EIF4G1Q04637 1599 aaKnown RBP23.17■■□□□ 1.3
VRK3-205ENST00000593919 PEG3Q9GZU2 1588 aa23.11■■□□□ 1.29
VRK3-205ENST00000593919 ATAD2BQ9ULI0 1458 aa23.02■■□□□ 1.28
VRK3-205ENST00000593919 SMARCA2P51531 1590 aa23.01■■□□□ 1.27
VRK3-205ENST00000593919 TOP2AP11388 1531 aaKnown RBP23■■□□□ 1.27
VRK3-205ENST00000593919 BAZ1BQ9UIG0 1483 aaKnown RBP22.89■■□□□ 1.25
VRK3-205ENST00000593919 CC2D2AQ9P2K1 1620 aa22.87■■□□□ 1.25
VRK3-205ENST00000593919 NCAPD3P42695 1498 aa22.84■■□□□ 1.25
VRK3-205ENST00000593919 HMGXB3Q12766 1538 aa22.83■■□□□ 1.24
VRK3-205ENST00000593919 CCDC88BA6NC98 1476 aa22.75■■□□□ 1.23
VRK3-205ENST00000593919 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
VRK3-205ENST00000593919 DNAJC5BQ9UF47 199 aa22.41■■□□□ 1.18
VRK3-205ENST00000593919 CFTRP13569 1480 aa22.3■■□□□ 1.16
VRK3-205ENST00000593919 PRDM2Q13029 1718 aa22.26■■□□□ 1.15
VRK3-205ENST00000593919 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
VRK3-205ENST00000593919 CADPSQ9ULU8 1353 aa22.24■■□□□ 1.15
VRK3-205ENST00000593919 TRIM41Q8WV44 630 aa22.18■■□□□ 1.14
VRK3-205ENST00000593919 NESP48681 1621 aa22.14■■□□□ 1.13
VRK3-205ENST00000593919 LAMC3Q9Y6N6 1575 aa22.12■■□□□ 1.13
VRK3-205ENST00000593919 WRNQ14191 1432 aaPredicted RBP eCLIP22.09■■□□□ 1.13
VRK3-205ENST00000593919 SYNJ1O43426 1573 aa22.04■■□□□ 1.12
VRK3-205ENST00000593919 FANCD2Q9BXW9 1451 aa22.01■■□□□ 1.11
VRK3-205ENST00000593919 TOP2BQ02880 1626 aa21.97■■□□□ 1.11
VRK3-205ENST00000593919 BIVM-ERCC5R4GMW8 1640 aa21.96■■□□□ 1.11
VRK3-205ENST00000593919 CUX1P39880 1505 aa21.94■■□□□ 1.1
VRK3-205ENST00000593919 PDS5BQ9NTI5 1447 aa21.92■■□□□ 1.1
VRK3-205ENST00000593919 KIF21AQ7Z4S6 1674 aa21.91■■□□□ 1.1
VRK3-205ENST00000593919 CEP164Q9UPV0 1460 aa21.89■■□□□ 1.1
VRK3-205ENST00000593919 DNMBPQ6XZF7 1577 aa21.8■■□□□ 1.08
VRK3-205ENST00000593919 FAM9AQ8IZU1 332 aaPredicted RBP21.78■■□□□ 1.08
VRK3-205ENST00000593919 SOGA1O94964 1423 aa21.76■■□□□ 1.07
VRK3-205ENST00000593919 TOPBP1Q92547 1522 aa21.76■■□□□ 1.07
VRK3-205ENST00000593919 URB2Q14146 1524 aaKnown RBP21.75■■□□□ 1.07
VRK3-205ENST00000593919 FGD5Q6ZNL6 1462 aa21.72■■□□□ 1.07
VRK3-205ENST00000593919 RUSC2Q8N2Y8 1516 aa21.7■■□□□ 1.06
VRK3-205ENST00000593919 ERCC6Q03468 1493 aa21.67■■□□□ 1.06
VRK3-205ENST00000593919 EEA1Q15075 1411 aa21.67■■□□□ 1.06
VRK3-205ENST00000593919 MRC2Q9UBG0 1479 aa21.66■■□□□ 1.06
VRK3-205ENST00000593919 POLA1P09884 1462 aaPredicted RBP21.65■■□□□ 1.06
VRK3-205ENST00000593919 LOC105371045A0A1W2PR82 267 aa21.62■■□□□ 1.05
VRK3-205ENST00000593919 WDR62O43379 1518 aa21.58■■□□□ 1.04
VRK3-205ENST00000593919 THOC2Q8NI27 1593 aaKnown RBP21.58■■□□□ 1.04
VRK3-205ENST00000593919 RAD54L2Q9Y4B4 1467 aa21.56■■□□□ 1.04
VRK3-205ENST00000593919 CSRNP3Q8WYN3 585 aa21.55■■□□□ 1.04
VRK3-205ENST00000593919 KIF27Q86VH2 1401 aa21.54■■□□□ 1.04
VRK3-205ENST00000593919 CUX2O14529 1486 aa21.53■■□□□ 1.04
VRK3-205ENST00000593919 ABCA10Q8WWZ4 1543 aa21.52■■□□□ 1.04
VRK3-205ENST00000593919 WDR97A6NE52 1622 aa21.52■■□□□ 1.04
VRK3-205ENST00000593919 EHMT2Q96KQ7 1210 aa21.49■■□□□ 1.03
VRK3-205ENST00000593919 TARBP1Q13395 1621 aaKnown RBP21.47■■□□□ 1.03
VRK3-205ENST00000593919 KIF21BO75037 1637 aa21.44■■□□□ 1.02
VRK3-205ENST00000593919 ABCA5Q8WWZ7 1642 aa21.39■■□□□ 1.01
VRK3-205ENST00000593919 GOLGA3Q08378 1498 aa21.38■■□□□ 1.01
VRK3-205ENST00000593919 IFT140Q96RY7 1462 aa21.37■■□□□ 1.01
VRK3-205ENST00000593919 PRXQ9BXM0 1461 aa21.37■■□□□ 1.01
VRK3-205ENST00000593919 IGF1RP08069 1367 aa21.36■■□□□ 1.01
VRK3-205ENST00000593919 TDRD9Q8NDG6 1382 aaKnown RBP21.36■■□□□ 1.01
VRK3-205ENST00000593919 RAPGEF2Q9Y4G8 1499 aa21.34■■□□□ 1.01
VRK3-205ENST00000593919 GAPVD1Q14C86 1478 aa21.32■■□□□ 1
VRK3-205ENST00000593919 ERICH3Q5RHP9 1530 aa21.32■■□□□ 1
VRK3-205ENST00000593919 ZNF608Q9ULD9 1512 aaPredicted RBP21.28■■□□□ 1
VRK3-205ENST00000593919 PBRM1Q86U86 1689 aa21.27■■□□□ 1
VRK3-205ENST00000593919 UBTFP17480 764 aaKnown RBP21.27■□□□□ 0.99
VRK3-205ENST00000593919 CUL7Q14999 1698 aa21.26■□□□□ 0.99
VRK3-205ENST00000593919 AQRO60306 1485 aaKnown RBP eCLIP21.26■□□□□ 0.993e-7■■■■■ 63.7
VRK3-205ENST00000593919 TNIKQ9UKE5 1360 aa21.26■□□□□ 0.99
VRK3-205ENST00000593919 CARMIL1Q5VZK9 1371 aa21.25■□□□□ 0.99
VRK3-205ENST00000593919 EIF4G3O43432 1585 aaKnown RBP21.23■□□□□ 0.99
VRK3-205ENST00000593919 GRIN2BQ13224 1484 aa21.17■□□□□ 0.98
VRK3-205ENST00000593919 CEP162Q5TB80 1403 aa21.16■□□□□ 0.98
VRK3-205ENST00000593919 ADAMTS12P58397 1594 aa21.12■□□□□ 0.97
VRK3-205ENST00000593919 FHAD1B1AJZ9 1412 aa21.07■□□□□ 0.96
VRK3-205ENST00000593919 SNAPC4Q5SXM2 1469 aa21.07■□□□□ 0.96
VRK3-205ENST00000593919 CTTNBP2Q8WZ74 1663 aa21.04■□□□□ 0.96
VRK3-205ENST00000593919 MAGI1Q96QZ7 1491 aaPredicted RBP21.03■□□□□ 0.96
VRK3-205ENST00000593919 CLIP1P30622 1438 aa21.03■□□□□ 0.96
VRK3-205ENST00000593919 RANGAP1P46060 587 aaPredicted RBP20.99■□□□□ 0.95
VRK3-205ENST00000593919 SYNJ2O15056 1496 aa20.94■□□□□ 0.94
VRK3-205ENST00000593919 GRIN2AQ12879 1464 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 165.8 ms