RNA–Protein interactions for RNA: ENST00000504782.5

RNF4-206, Transcript of ring finger protein 4, humanhuman

TSL 2

Gene RNF4, Length 614 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-206ENST00000504782 NISCHQ9Y2I1 1504 aa31.95■■■□□ 2.7
RNF4-206ENST00000504782 CCDC180Q9P1Z9 1646 aa28.58■■■□□ 2.17
RNF4-206ENST00000504782 ABCC9O60706 1549 aa28.48■■■□□ 2.15
RNF4-206ENST00000504782 RB1CC1Q8TDY2 1594 aa27.1■■□□□ 1.93
RNF4-206ENST00000504782 NACADO15069 1562 aa26.94■■□□□ 1.9
RNF4-206ENST00000504782 DCAF8L2P0C7V8 631 aa26.92■■□□□ 1.9
RNF4-206ENST00000504782 UNC13AQ9UPW8 1703 aa26.65■■□□□ 1.86
RNF4-206ENST00000504782 DNAJC5BQ9UF47 199 aa26.62■■□□□ 1.85
RNF4-206ENST00000504782 MYO15BQ96JP2 1530 aa26.59■■□□□ 1.85
RNF4-206ENST00000504782 PABPN1Q86U42 306 aaKnown RBP eCLIP26.55■■□□□ 1.84
RNF4-206ENST00000504782 ZCCHC6Q5VYS8 1495 aaKnown RBP26.51■■□□□ 1.83
RNF4-206ENST00000504782 BICRAQ9NZM4 1560 aa26.4■■□□□ 1.82
RNF4-206ENST00000504782 DCAF1Q9Y4B6 1507 aa26.34■■□□□ 1.81
RNF4-206ENST00000504782 SCRIBQ14160 1630 aa26.12■■□□□ 1.77
RNF4-206ENST00000504782 SHROOM4Q9ULL8 1493 aa25.87■■□□□ 1.73
RNF4-206ENST00000504782 CC2D2AQ9P2K1 1620 aa25.73■■□□□ 1.71
RNF4-206ENST00000504782 EIF4G1Q04637 1599 aaKnown RBP25.69■■□□□ 1.7
RNF4-206ENST00000504782 CECR2Q9BXF3 1484 aa25.59■■□□□ 1.69
RNF4-206ENST00000504782 SMARCA4P51532 1647 aa24.9■■□□□ 1.58
RNF4-206ENST00000504782 NCAPD3P42695 1498 aa24.88■■□□□ 1.57
RNF4-206ENST00000504782 ATAD2BQ9ULI0 1458 aa24.86■■□□□ 1.57
RNF4-206ENST00000504782 SMARCA2P51531 1590 aa24.76■■□□□ 1.55
RNF4-206ENST00000504782 BAZ1AQ9NRL2 1556 aaPredicted RBP24.75■■□□□ 1.55
RNF4-206ENST00000504782 HMGXB3Q12766 1538 aa24.71■■□□□ 1.55
RNF4-206ENST00000504782 MROH2BQ7Z745 1585 aa24.67■■□□□ 1.54
RNF4-206ENST00000504782 PEG3Q9GZU2 1588 aa24.62■■□□□ 1.53
RNF4-206ENST00000504782 BAZ1BQ9UIG0 1483 aaKnown RBP24.61■■□□□ 1.53
RNF4-206ENST00000504782 NESP48681 1621 aa24.54■■□□□ 1.52
RNF4-206ENST00000504782 ERCC6Q03468 1493 aa24.5■■□□□ 1.51
RNF4-206ENST00000504782 WIZO95785 1651 aa24.42■■□□□ 1.5
RNF4-206ENST00000504782 CUX2O14529 1486 aa24.37■■□□□ 1.49
RNF4-206ENST00000504782 LAMC3Q9Y6N6 1575 aa24.29■■□□□ 1.48
RNF4-206ENST00000504782 KIF21AQ7Z4S6 1674 aa24.24■■□□□ 1.47
RNF4-206ENST00000504782 THOC2Q8NI27 1593 aaKnown RBP24.23■■□□□ 1.47
RNF4-206ENST00000504782 DNAJC5Q9H3Z4 198 aa24.21■■□□□ 1.47
RNF4-206ENST00000504782 RSF1Q96T23 1441 aaPredicted RBP24.18■■□□□ 1.46
RNF4-206ENST00000504782 CADPSQ9ULU8 1353 aa24.14■■□□□ 1.45
RNF4-206ENST00000504782 PDS5BQ9NTI5 1447 aa24.11■■□□□ 1.45
RNF4-206ENST00000504782 TOP2AP11388 1531 aaKnown RBP24.03■■□□□ 1.44
RNF4-206ENST00000504782 MRC2Q9UBG0 1479 aa23.94■■□□□ 1.42
RNF4-206ENST00000504782 CFTRP13569 1480 aa23.91■■□□□ 1.42
RNF4-206ENST00000504782 WDR62O43379 1518 aa23.89■■□□□ 1.41
RNF4-206ENST00000504782 FANCD2Q9BXW9 1451 aa23.88■■□□□ 1.41
RNF4-206ENST00000504782 CEP164Q9UPV0 1460 aa23.87■■□□□ 1.41
RNF4-206ENST00000504782 CCDC88BA6NC98 1476 aa23.8■■□□□ 1.4
RNF4-206ENST00000504782 PRDM2Q13029 1718 aa23.75■■□□□ 1.39
RNF4-206ENST00000504782 URB2Q14146 1524 aaKnown RBP23.72■■□□□ 1.39
RNF4-206ENST00000504782 TOPBP1Q92547 1522 aa23.47■■□□□ 1.35
RNF4-206ENST00000504782 ZNF608Q9ULD9 1512 aaPredicted RBP23.42■■□□□ 1.34
RNF4-206ENST00000504782 DNMBPQ6XZF7 1577 aa23.38■■□□□ 1.33
RNF4-206ENST00000504782 IFT140Q96RY7 1462 aa23.37■■□□□ 1.33
RNF4-206ENST00000504782 ABCC8Q09428 1581 aa23.33■■□□□ 1.33
RNF4-206ENST00000504782 OSCARQ8IYS5 282 aa23.3■■□□□ 1.32
RNF4-206ENST00000504782 TARBP1Q13395 1621 aaKnown RBP23.28■■□□□ 1.32
RNF4-206ENST00000504782 EIF4G3O43432 1585 aaKnown RBP23.27■■□□□ 1.32
RNF4-206ENST00000504782 SUPT5HO00267 1087 aaKnown RBP23.27■■□□□ 1.32
RNF4-206ENST00000504782 TRIM41Q8WV44 630 aa23.26■■□□□ 1.31
RNF4-206ENST00000504782 POLA1P09884 1462 aaPredicted RBP23.24■■□□□ 1.31
RNF4-206ENST00000504782 AQRO60306 1485 aaKnown RBP eCLIP23.21■■□□□ 1.311e-7■■■■□ 23.3
RNF4-206ENST00000504782 RAD54L2Q9Y4B4 1467 aa23.2■■□□□ 1.3
RNF4-206ENST00000504782 CUX1P39880 1505 aa23.16■■□□□ 1.3
RNF4-206ENST00000504782 FGD5Q6ZNL6 1462 aa23.12■■□□□ 1.29
RNF4-206ENST00000504782 SOGA1O94964 1423 aa23.12■■□□□ 1.29
RNF4-206ENST00000504782 CHD1O14646 1710 aa23.11■■□□□ 1.29
RNF4-206ENST00000504782 TDRD9Q8NDG6 1382 aaKnown RBP23.08■■□□□ 1.29
RNF4-206ENST00000504782 RIMBP3CA6NJZ7 1639 aa23.07■■□□□ 1.28
RNF4-206ENST00000504782 RIMBP3BA6NNM3 1639 aa23.07■■□□□ 1.28
RNF4-206ENST00000504782 RIMBP3Q9UFD9 1639 aa23.07■■□□□ 1.28
RNF4-206ENST00000504782 FBLN2P98095 1184 aa22.99■■□□□ 1.27
RNF4-206ENST00000504782 WDR97A6NE52 1622 aa22.99■■□□□ 1.27
RNF4-206ENST00000504782 ARHGEF11O15085 1522 aa22.98■■□□□ 1.27
RNF4-206ENST00000504782 SNAPC4Q5SXM2 1469 aa22.95■■□□□ 1.26
RNF4-206ENST00000504782 PBRM1Q86U86 1689 aa22.89■■□□□ 1.25
RNF4-206ENST00000504782 GRIN2BQ13224 1484 aa22.87■■□□□ 1.25
RNF4-206ENST00000504782 ABCA10Q8WWZ4 1543 aa22.84■■□□□ 1.25
RNF4-206ENST00000504782 GAPVD1Q14C86 1478 aa22.84■■□□□ 1.25
RNF4-206ENST00000504782 MAGI1Q96QZ7 1491 aaPredicted RBP22.84■■□□□ 1.25
RNF4-206ENST00000504782 SYNJ1O43426 1573 aa22.84■■□□□ 1.25
RNF4-206ENST00000504782 ABCA5Q8WWZ7 1642 aa22.83■■□□□ 1.25
RNF4-206ENST00000504782 BIVM-ERCC5R4GMW8 1640 aa22.82■■□□□ 1.24
RNF4-206ENST00000504782 CHMP7Q8WUX9 453 aaPredicted RBP22.81■■□□□ 1.24
RNF4-206ENST00000504782 TOP2BQ02880 1626 aa22.8■■□□□ 1.24
RNF4-206ENST00000504782 CYB5RLQ6IPT4 315 aa22.8■■□□□ 1.24
RNF4-206ENST00000504782 CLASP1Q7Z460 1538 aa22.8■■□□□ 1.24
RNF4-206ENST00000504782 WRNQ14191 1432 aaPredicted RBP eCLIP22.78■■□□□ 1.24
RNF4-206ENST00000504782 SYNJ2O15056 1496 aa22.78■■□□□ 1.24
RNF4-206ENST00000504782 ARAP1Q96P48 1450 aa22.78■■□□□ 1.24
RNF4-206ENST00000504782 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
RNF4-206ENST00000504782 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
RNF4-206ENST00000504782 CEP170Q5SW79 1584 aa22.57■■□□□ 1.2
RNF4-206ENST00000504782 ERICH3Q5RHP9 1530 aa22.54■■□□□ 1.2
RNF4-206ENST00000504782 ERCC6L2Q5T890 1561 aa22.54■■□□□ 1.2
RNF4-206ENST00000504782 FHAD1B1AJZ9 1412 aa22.53■■□□□ 1.2
RNF4-206ENST00000504782 NUP160Q12769 1436 aa22.51■■□□□ 1.19
RNF4-206ENST00000504782 TRHP20396 242 aaPredicted RBP22.46■■□□□ 1.19
RNF4-206ENST00000504782 SHROOM2Q13796 1616 aa22.43■■□□□ 1.18
RNF4-206ENST00000504782 IGF1RP08069 1367 aa22.33■■□□□ 1.17
RNF4-206ENST00000504782 RUSC2Q8N2Y8 1516 aa22.31■■□□□ 1.16
RNF4-206ENST00000504782 KIF27Q86VH2 1401 aa22.3■■□□□ 1.16
RNF4-206ENST00000504782 PRG4Q92954 1404 aaPredicted RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms