RNA–Protein interactions for RNA: ENST00000525079.5

TRAPPC4-205, Transcript of trafficking protein particle complex 4, humanhuman

TSL 3

Gene TRAPPC4, Length 768 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-205ENST00000525079 NISCHQ9Y2I1 1504 aa31.46■■■□□ 2.63
TRAPPC4-205ENST00000525079 CCDC180Q9P1Z9 1646 aa28.01■■■□□ 2.07
TRAPPC4-205ENST00000525079 ABCC9O60706 1549 aa27.72■■■□□ 2.03
TRAPPC4-205ENST00000525079 DCAF8L2P0C7V8 631 aa26.52■■□□□ 1.84
TRAPPC4-205ENST00000525079 RB1CC1Q8TDY2 1594 aa26.49■■□□□ 1.83
TRAPPC4-205ENST00000525079 NACADO15069 1562 aa26.39■■□□□ 1.82
TRAPPC4-205ENST00000525079 ZCCHC6Q5VYS8 1495 aaKnown RBP26.15■■□□□ 1.78
TRAPPC4-205ENST00000525079 MYO15BQ96JP2 1530 aa26.11■■□□□ 1.77
TRAPPC4-205ENST00000525079 DCAF1Q9Y4B6 1507 aa25.95■■□□□ 1.74
TRAPPC4-205ENST00000525079 UNC13AQ9UPW8 1703 aa25.93■■□□□ 1.74
TRAPPC4-205ENST00000525079 PABPN1Q86U42 306 aaKnown RBP eCLIP25.91■■□□□ 1.74
TRAPPC4-205ENST00000525079 BICRAQ9NZM4 1560 aa25.72■■□□□ 1.71
TRAPPC4-205ENST00000525079 DNAJC5BQ9UF47 199 aa25.65■■□□□ 1.7
TRAPPC4-205ENST00000525079 SCRIBQ14160 1630 aa25.64■■□□□ 1.7
TRAPPC4-205ENST00000525079 SHROOM4Q9ULL8 1493 aa25.3■■□□□ 1.64
TRAPPC4-205ENST00000525079 EIF4G1Q04637 1599 aaKnown RBP25.05■■□□□ 1.6
TRAPPC4-205ENST00000525079 CC2D2AQ9P2K1 1620 aa25.02■■□□□ 1.6
TRAPPC4-205ENST00000525079 CECR2Q9BXF3 1484 aa24.88■■□□□ 1.57
TRAPPC4-205ENST00000525079 SMARCA4P51532 1647 aa24.46■■□□□ 1.51
TRAPPC4-205ENST00000525079 BAZ1AQ9NRL2 1556 aaPredicted RBP24.38■■□□□ 1.49
TRAPPC4-205ENST00000525079 ATAD2BQ9ULI0 1458 aa24.38■■□□□ 1.49
TRAPPC4-205ENST00000525079 NCAPD3P42695 1498 aa24.37■■□□□ 1.49
TRAPPC4-205ENST00000525079 SMARCA2P51531 1590 aa24.3■■□□□ 1.48
TRAPPC4-205ENST00000525079 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
TRAPPC4-205ENST00000525079 HMGXB3Q12766 1538 aa24.2■■□□□ 1.47
TRAPPC4-205ENST00000525079 BAZ1BQ9UIG0 1483 aaKnown RBP24.17■■□□□ 1.46
TRAPPC4-205ENST00000525079 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
TRAPPC4-205ENST00000525079 WIZO95785 1651 aa24.03■■□□□ 1.44
TRAPPC4-205ENST00000525079 NESP48681 1621 aa23.93■■□□□ 1.42
TRAPPC4-205ENST00000525079 RSF1Q96T23 1441 aaPredicted RBP23.92■■□□□ 1.42
TRAPPC4-205ENST00000525079 ERCC6Q03468 1493 aa23.87■■□□□ 1.41
TRAPPC4-205ENST00000525079 LAMC3Q9Y6N6 1575 aa23.75■■□□□ 1.39
TRAPPC4-205ENST00000525079 TOP2AP11388 1531 aaKnown RBP23.7■■□□□ 1.38
TRAPPC4-205ENST00000525079 CADPSQ9ULU8 1353 aa23.67■■□□□ 1.38
TRAPPC4-205ENST00000525079 CUX2O14529 1486 aa23.62■■□□□ 1.37
TRAPPC4-205ENST00000525079 KIF21AQ7Z4S6 1674 aa23.61■■□□□ 1.37
TRAPPC4-205ENST00000525079 PDS5BQ9NTI5 1447 aa23.61■■□□□ 1.37
TRAPPC4-205ENST00000525079 THOC2Q8NI27 1593 aaKnown RBP23.54■■□□□ 1.36
TRAPPC4-205ENST00000525079 CCDC88BA6NC98 1476 aa23.47■■□□□ 1.35
TRAPPC4-205ENST00000525079 CFTRP13569 1480 aa23.47■■□□□ 1.35
TRAPPC4-205ENST00000525079 FANCD2Q9BXW9 1451 aa23.41■■□□□ 1.34
TRAPPC4-205ENST00000525079 MRC2Q9UBG0 1479 aa23.39■■□□□ 1.34
TRAPPC4-205ENST00000525079 CEP164Q9UPV0 1460 aa23.39■■□□□ 1.34
TRAPPC4-205ENST00000525079 WDR62O43379 1518 aa23.3■■□□□ 1.32
TRAPPC4-205ENST00000525079 SUPT5HO00267 1087 aaKnown RBP23.28■■□□□ 1.32
TRAPPC4-205ENST00000525079 PRDM2Q13029 1718 aa23.27■■□□□ 1.32
TRAPPC4-205ENST00000525079 URB2Q14146 1524 aaKnown RBP23.2■■□□□ 1.3
TRAPPC4-205ENST00000525079 DNAJC5Q9H3Z4 198 aa23.19■■□□□ 1.3
TRAPPC4-205ENST00000525079 TOPBP1Q92547 1522 aa23.02■■□□□ 1.28
TRAPPC4-205ENST00000525079 ABCC8Q09428 1581 aa22.95■■□□□ 1.26
TRAPPC4-205ENST00000525079 DNMBPQ6XZF7 1577 aa22.95■■□□□ 1.26
TRAPPC4-205ENST00000525079 IFT140Q96RY7 1462 aa22.89■■□□□ 1.25
TRAPPC4-205ENST00000525079 ZNF608Q9ULD9 1512 aaPredicted RBP22.87■■□□□ 1.25
TRAPPC4-205ENST00000525079 POLA1P09884 1462 aaPredicted RBP22.8■■□□□ 1.24
TRAPPC4-205ENST00000525079 CUX1P39880 1505 aa22.78■■□□□ 1.24
TRAPPC4-205ENST00000525079 TARBP1Q13395 1621 aaKnown RBP22.78■■□□□ 1.24
TRAPPC4-205ENST00000525079 RAD54L2Q9Y4B4 1467 aa22.76■■□□□ 1.23
TRAPPC4-205ENST00000525079 SOGA1O94964 1423 aa22.74■■□□□ 1.23
TRAPPC4-205ENST00000525079 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
TRAPPC4-205ENST00000525079 EIF4G3O43432 1585 aaKnown RBP22.73■■□□□ 1.23
TRAPPC4-205ENST00000525079 AQRO60306 1485 aaKnown RBP eCLIP22.73■■□□□ 1.231e-6■■■■□ 24.3
TRAPPC4-205ENST00000525079 OSCARQ8IYS5 282 aa22.68■■□□□ 1.22
TRAPPC4-205ENST00000525079 TDRD9Q8NDG6 1382 aaKnown RBP22.65■■□□□ 1.22
TRAPPC4-205ENST00000525079 WRNQ14191 1432 aaPredicted RBP eCLIP22.56■■□□□ 1.2
TRAPPC4-205ENST00000525079 FBLN2P98095 1184 aa22.53■■□□□ 1.2
TRAPPC4-205ENST00000525079 SYNJ1O43426 1573 aa22.53■■□□□ 1.2
TRAPPC4-205ENST00000525079 WDR97A6NE52 1622 aa22.52■■□□□ 1.2
TRAPPC4-205ENST00000525079 CHD1O14646 1710 aa22.51■■□□□ 1.19
TRAPPC4-205ENST00000525079 TOP2BQ02880 1626 aa22.5■■□□□ 1.19
TRAPPC4-205ENST00000525079 BIVM-ERCC5R4GMW8 1640 aa22.5■■□□□ 1.19
TRAPPC4-205ENST00000525079 SNAPC4Q5SXM2 1469 aa22.47■■□□□ 1.19
TRAPPC4-205ENST00000525079 ABCA10Q8WWZ4 1543 aa22.47■■□□□ 1.19
TRAPPC4-205ENST00000525079 GRIN2BQ13224 1484 aa22.46■■□□□ 1.19
TRAPPC4-205ENST00000525079 GAPVD1Q14C86 1478 aa22.45■■□□□ 1.18
TRAPPC4-205ENST00000525079 TRIM41Q8WV44 630 aa22.44■■□□□ 1.18
TRAPPC4-205ENST00000525079 PBRM1Q86U86 1689 aa22.42■■□□□ 1.18
TRAPPC4-205ENST00000525079 ABCA5Q8WWZ7 1642 aa22.4■■□□□ 1.18
TRAPPC4-205ENST00000525079 CHMP7Q8WUX9 453 aaPredicted RBP22.39■■□□□ 1.17
TRAPPC4-205ENST00000525079 MAGI1Q96QZ7 1491 aaPredicted RBP22.39■■□□□ 1.17
TRAPPC4-205ENST00000525079 RIMBP3CA6NJZ7 1639 aa22.33■■□□□ 1.17
TRAPPC4-205ENST00000525079 RIMBP3BA6NNM3 1639 aa22.33■■□□□ 1.17
TRAPPC4-205ENST00000525079 RIMBP3Q9UFD9 1639 aa22.33■■□□□ 1.17
TRAPPC4-205ENST00000525079 SYNJ2O15056 1496 aa22.33■■□□□ 1.16
TRAPPC4-205ENST00000525079 ARHGEF11O15085 1522 aa22.29■■□□□ 1.16
TRAPPC4-205ENST00000525079 CLASP1Q7Z460 1538 aa22.21■■□□□ 1.15
TRAPPC4-205ENST00000525079 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
TRAPPC4-205ENST00000525079 ERICH3Q5RHP9 1530 aa22.18■■□□□ 1.14
TRAPPC4-205ENST00000525079 GRIN2AQ12879 1464 aa22.17■■□□□ 1.14
TRAPPC4-205ENST00000525079 CYB5RLQ6IPT4 315 aa22.17■■□□□ 1.14
TRAPPC4-205ENST00000525079 FHAD1B1AJZ9 1412 aa22.16■■□□□ 1.14
TRAPPC4-205ENST00000525079 ARAP1Q96P48 1450 aa22.11■■□□□ 1.13
TRAPPC4-205ENST00000525079 CEP170Q5SW79 1584 aa22.09■■□□□ 1.13
TRAPPC4-205ENST00000525079 KIF27Q86VH2 1401 aa22.08■■□□□ 1.13
TRAPPC4-205ENST00000525079 NUP160Q12769 1436 aa22.06■■□□□ 1.12
TRAPPC4-205ENST00000525079 IGF1RP08069 1367 aa22.04■■□□□ 1.12
TRAPPC4-205ENST00000525079 ERCC6L2Q5T890 1561 aa21.97■■□□□ 1.11
TRAPPC4-205ENST00000525079 CUL7Q14999 1698 aa21.95■■□□□ 1.1
TRAPPC4-205ENST00000525079 SHROOM2Q13796 1616 aa21.91■■□□□ 1.1
TRAPPC4-205ENST00000525079 RUSC2Q8N2Y8 1516 aa21.91■■□□□ 1.1
TRAPPC4-205ENST00000525079 CARMIL1Q5VZK9 1371 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms