Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB3O75112 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LDB3O75112 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.11■□□□□ 0.49
LDB3O75112 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB3O75112 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB3O75112 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB3O75112 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LDB3O75112 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB3O75112 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB3O75112 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB3O75112 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB3O75112 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.1■□□□□ 0.49
LDB3O75112 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.1■□□□□ 0.49
LDB3O75112 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.1■□□□□ 0.49
LDB3O75112 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
LDB3O75112 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
LDB3O75112 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.1■□□□□ 0.49
LDB3O75112 SNORA78-201ENST00000459373 127 ntBASIC18.1■□□□□ 0.49
LDB3O75112 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.1■□□□□ 0.49
LDB3O75112 Z85996.1-201ENST00000494644 937 ntBASIC18.1■□□□□ 0.49
LDB3O75112 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 AL031985.4-201ENST00000642138 673 ntBASIC18.1■□□□□ 0.49
LDB3O75112 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB3O75112 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LDB3O75112 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.1■□□□□ 0.49
LDB3O75112 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.09■□□□□ 0.49
LDB3O75112 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.09■□□□□ 0.49
LDB3O75112 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LDB3O75112 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LDB3O75112 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LDB3O75112 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LDB3O75112 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
LDB3O75112 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.09■□□□□ 0.49
LDB3O75112 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.09■□□□□ 0.49
LDB3O75112 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.09■□□□□ 0.49
LDB3O75112 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LDB3O75112 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LDB3O75112 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LDB3O75112 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LDB3O75112 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LDB3O75112 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LDB3O75112 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LDB3O75112 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.08■□□□□ 0.49
LDB3O75112 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LDB3O75112 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.08■□□□□ 0.49
LDB3O75112 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDB3O75112 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDB3O75112 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LDB3O75112 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.08■□□□□ 0.48
LDB3O75112 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
LDB3O75112 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.08■□□□□ 0.48
LDB3O75112 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.08■□□□□ 0.48
LDB3O75112 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.08■□□□□ 0.48
LDB3O75112 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.08■□□□□ 0.48
LDB3O75112 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.08■□□□□ 0.48
LDB3O75112 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
LDB3O75112 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.08■□□□□ 0.48
LDB3O75112 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.08■□□□□ 0.48
LDB3O75112 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
LDB3O75112 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LDB3O75112 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms