RNA–Protein interactions for RNA: ENST00000339307.8

ITGA4-202, Transcript of integrin subunit alpha 4, humanhuman

TSL 1 (best) BASIC

Gene ITGA4, Length 1,403 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-202ENST00000339307 NISCHQ9Y2I1 1504 aa48.17■■■■■ 5.3
ITGA4-202ENST00000339307 ABCC9O60706 1549 aa43.13■■■■■ 4.49
ITGA4-202ENST00000339307 CCDC180Q9P1Z9 1646 aa43.09■■■■■ 4.49
ITGA4-202ENST00000339307 RB1CC1Q8TDY2 1594 aa41.03■■■■■ 4.16
ITGA4-202ENST00000339307 DCAF8L2P0C7V8 631 aa40.92■■■■■ 4.14
ITGA4-202ENST00000339307 NACADO15069 1562 aa40.74■■■■■ 4.11
ITGA4-202ENST00000339307 DNAJC5BQ9UF47 199 aa40.27■■■■■ 4.04
ITGA4-202ENST00000339307 PABPN1Q86U42 306 aaKnown RBP eCLIP40.25■■■■■ 4.03
ITGA4-202ENST00000339307 MYO15BQ96JP2 1530 aa40.13■■■■■ 4.02
ITGA4-202ENST00000339307 UNC13AQ9UPW8 1703 aa40.05■■■■■ 4
ITGA4-202ENST00000339307 ZCCHC6Q5VYS8 1495 aaKnown RBP39.92■■■■□ 3.98
ITGA4-202ENST00000339307 BICRAQ9NZM4 1560 aa39.75■■■■□ 3.95
ITGA4-202ENST00000339307 DCAF1Q9Y4B6 1507 aa39.7■■■■□ 3.95
ITGA4-202ENST00000339307 SCRIBQ14160 1630 aa39.42■■■■□ 3.9
ITGA4-202ENST00000339307 SHROOM4Q9ULL8 1493 aa39.18■■■■□ 3.86
ITGA4-202ENST00000339307 CC2D2AQ9P2K1 1620 aa38.89■■■■□ 3.82
ITGA4-202ENST00000339307 EIF4G1Q04637 1599 aaKnown RBP38.82■■■■□ 3.81
ITGA4-202ENST00000339307 CECR2Q9BXF3 1484 aa38.79■■■■□ 3.8
ITGA4-202ENST00000339307 NCAPD3P42695 1498 aa37.6■■■■□ 3.61
ITGA4-202ENST00000339307 ATAD2BQ9ULI0 1458 aa37.55■■■■□ 3.6
ITGA4-202ENST00000339307 SMARCA4P51532 1647 aa37.54■■■■□ 3.6
ITGA4-202ENST00000339307 SMARCA2P51531 1590 aa37.45■■■■□ 3.59
ITGA4-202ENST00000339307 BAZ1AQ9NRL2 1556 aaPredicted RBP37.39■■■■□ 3.58
ITGA4-202ENST00000339307 HMGXB3Q12766 1538 aa37.32■■■■□ 3.56
ITGA4-202ENST00000339307 ERCC6Q03468 1493 aa37.26■■■■□ 3.55
ITGA4-202ENST00000339307 BAZ1BQ9UIG0 1483 aaKnown RBP37.25■■■■□ 3.55
ITGA4-202ENST00000339307 MROH2BQ7Z745 1585 aa37.14■■■■□ 3.54
ITGA4-202ENST00000339307 PEG3Q9GZU2 1588 aa37.08■■■■□ 3.53
ITGA4-202ENST00000339307 NESP48681 1621 aa37.05■■■■□ 3.52
ITGA4-202ENST00000339307 CUX2O14529 1486 aa37■■■■□ 3.51
ITGA4-202ENST00000339307 DNAJC5Q9H3Z4 198 aa36.86■■■■□ 3.49
ITGA4-202ENST00000339307 LAMC3Q9Y6N6 1575 aa36.75■■■■□ 3.47
ITGA4-202ENST00000339307 WIZO95785 1651 aa36.73■■■■□ 3.47
ITGA4-202ENST00000339307 PDS5BQ9NTI5 1447 aa36.6■■■■□ 3.45
ITGA4-202ENST00000339307 THOC2Q8NI27 1593 aaKnown RBP36.55■■■■□ 3.44
ITGA4-202ENST00000339307 KIF21AQ7Z4S6 1674 aa36.55■■■■□ 3.44
ITGA4-202ENST00000339307 CADPSQ9ULU8 1353 aa36.53■■■■□ 3.44
ITGA4-202ENST00000339307 RSF1Q96T23 1441 aaPredicted RBP36.43■■■■□ 3.42
ITGA4-202ENST00000339307 MRC2Q9UBG0 1479 aa36.25■■■■□ 3.39
ITGA4-202ENST00000339307 TOP2AP11388 1531 aaKnown RBP36.24■■■■□ 3.39
ITGA4-202ENST00000339307 CEP164Q9UPV0 1460 aa36.17■■■■□ 3.38
ITGA4-202ENST00000339307 FANCD2Q9BXW9 1451 aa36.13■■■■□ 3.37
ITGA4-202ENST00000339307 CFTRP13569 1480 aa36.1■■■■□ 3.37
ITGA4-202ENST00000339307 WDR62O43379 1518 aa36.1■■■■□ 3.37
ITGA4-202ENST00000339307 CCDC88BA6NC98 1476 aa35.86■■■■□ 3.33
ITGA4-202ENST00000339307 URB2Q14146 1524 aaKnown RBP35.79■■■■□ 3.32
ITGA4-202ENST00000339307 PRDM2Q13029 1718 aa35.72■■■■□ 3.31
ITGA4-202ENST00000339307 TRIM41Q8WV44 630 aa35.5■■■■□ 3.27
ITGA4-202ENST00000339307 OSCARQ8IYS5 282 aa35.47■■■■□ 3.27
ITGA4-202ENST00000339307 TOPBP1Q92547 1522 aa35.44■■■■□ 3.26
ITGA4-202ENST00000339307 IFT140Q96RY7 1462 aa35.41■■■■□ 3.26
ITGA4-202ENST00000339307 ABCC8Q09428 1581 aa35.37■■■■□ 3.25
ITGA4-202ENST00000339307 ZNF608Q9ULD9 1512 aaPredicted RBP35.35■■■■□ 3.25
ITGA4-202ENST00000339307 DNMBPQ6XZF7 1577 aa35.31■■■■□ 3.24
ITGA4-202ENST00000339307 SUPT5HO00267 1087 aaKnown RBP35.17■■■■□ 3.22
ITGA4-202ENST00000339307 EIF4G3O43432 1585 aaKnown RBP35.14■■■■□ 3.22
ITGA4-202ENST00000339307 AQRO60306 1485 aaKnown RBP eCLIP35.1■■■■□ 3.21
ITGA4-202ENST00000339307 POLA1P09884 1462 aaPredicted RBP35.09■■■■□ 3.21
ITGA4-202ENST00000339307 TARBP1Q13395 1621 aaKnown RBP35.07■■■■□ 3.2
ITGA4-202ENST00000339307 RAD54L2Q9Y4B4 1467 aa35.01■■■■□ 3.2
ITGA4-202ENST00000339307 SOGA1O94964 1423 aa35■■■■□ 3.19
ITGA4-202ENST00000339307 FBLN2P98095 1184 aa34.99■■■■□ 3.19
ITGA4-202ENST00000339307 TDRD9Q8NDG6 1382 aaKnown RBP34.94■■■■□ 3.18
ITGA4-202ENST00000339307 FGD5Q6ZNL6 1462 aa34.92■■■■□ 3.18
ITGA4-202ENST00000339307 RIMBP3CA6NJZ7 1639 aa34.9■■■■□ 3.18
ITGA4-202ENST00000339307 RIMBP3BA6NNM3 1639 aa34.9■■■■□ 3.18
ITGA4-202ENST00000339307 RIMBP3Q9UFD9 1639 aa34.9■■■■□ 3.18
ITGA4-202ENST00000339307 CUX1P39880 1505 aa34.87■■■■□ 3.17
ITGA4-202ENST00000339307 CHD1O14646 1710 aa34.87■■■■□ 3.17
ITGA4-202ENST00000339307 ARHGEF11O15085 1522 aa34.8■■■■□ 3.16
ITGA4-202ENST00000339307 SNAPC4Q5SXM2 1469 aa34.72■■■■□ 3.15
ITGA4-202ENST00000339307 CYB5RLQ6IPT4 315 aa34.69■■■■□ 3.14
ITGA4-202ENST00000339307 CHMP7Q8WUX9 453 aaPredicted RBP34.69■■■■□ 3.14
ITGA4-202ENST00000339307 WDR97A6NE52 1622 aa34.68■■■■□ 3.14
ITGA4-202ENST00000339307 GRIN2BQ13224 1484 aa34.63■■■■□ 3.13
ITGA4-202ENST00000339307 MAGI1Q96QZ7 1491 aaPredicted RBP34.59■■■■□ 3.13
ITGA4-202ENST00000339307 GAPVD1Q14C86 1478 aa34.55■■■■□ 3.12
ITGA4-202ENST00000339307 PBRM1Q86U86 1689 aa34.49■■■■□ 3.11
ITGA4-202ENST00000339307 SYNJ2O15056 1496 aa34.49■■■■□ 3.11
ITGA4-202ENST00000339307 ABCA10Q8WWZ4 1543 aa34.48■■■■□ 3.11
ITGA4-202ENST00000339307 SYNJ1O43426 1573 aa34.48■■■■□ 3.11
ITGA4-202ENST00000339307 ARAP1Q96P48 1450 aa34.46■■■■□ 3.11
ITGA4-202ENST00000339307 WRNQ14191 1432 aaPredicted RBP eCLIP34.45■■■■□ 3.11
ITGA4-202ENST00000339307 CLASP1Q7Z460 1538 aa34.4■■■■□ 3.1
ITGA4-202ENST00000339307 ABCA5Q8WWZ7 1642 aa34.39■■■■□ 3.1
ITGA4-202ENST00000339307 TOP2BQ02880 1626 aa34.34■■■■□ 3.09
ITGA4-202ENST00000339307 BIVM-ERCC5R4GMW8 1640 aa34.33■■■■□ 3.09
ITGA4-202ENST00000339307 TRHP20396 242 aaPredicted RBP34.32■■■■□ 3.08
ITGA4-202ENST00000339307 GRIN2AQ12879 1464 aa34.18■■■■□ 3.06
ITGA4-202ENST00000339307 ADAMTS12P58397 1594 aa34.14■■■■□ 3.06
ITGA4-202ENST00000339307 FHAD1B1AJZ9 1412 aa34.1■■■■□ 3.05
ITGA4-202ENST00000339307 ERICH3Q5RHP9 1530 aa34.05■■■■□ 3.04
ITGA4-202ENST00000339307 CEP170Q5SW79 1584 aa34.04■■■■□ 3.04
ITGA4-202ENST00000339307 NUP160Q12769 1436 aa34.01■■■■□ 3.03
ITGA4-202ENST00000339307 ERCC6L2Q5T890 1561 aa33.95■■■■□ 3.03
ITGA4-202ENST00000339307 SHROOM2Q13796 1616 aa33.81■■■■□ 3
ITGA4-202ENST00000339307 JPH4Q96JJ6 628 aa33.79■■■■□ 3
ITGA4-202ENST00000339307 PRG4Q92954 1404 aaPredicted RBP33.78■■■■□ 3
ITGA4-202ENST00000339307 KIF27Q86VH2 1401 aa33.76■■■□□ 2.99
ITGA4-202ENST00000339307 IGF1RP08069 1367 aa33.7■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 235.7 ms