RNA–Protein interactions for RNA: ENST00000409286.5

LIMS2-204, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2 BASIC

Gene LIMS2, Length 1,678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-204ENST00000409286 NISCHQ9Y2I1 1504 aa42.59■■■■■ 4.41
LIMS2-204ENST00000409286 CCDC180Q9P1Z9 1646 aa36.9■■■■□ 3.5
LIMS2-204ENST00000409286 ZCCHC6Q5VYS8 1495 aaKnown RBP35.86■■■■□ 3.33
LIMS2-204ENST00000409286 DCAF1Q9Y4B6 1507 aa35.23■■■■□ 3.23
LIMS2-204ENST00000409286 SHROOM4Q9ULL8 1493 aa35.1■■■■□ 3.21
LIMS2-204ENST00000409286 DCAF8L2P0C7V8 631 aa35.06■■■■□ 3.2
LIMS2-204ENST00000409286 MYO15BQ96JP2 1530 aa34.64■■■■□ 3.14
LIMS2-204ENST00000409286 ABCC9O60706 1549 aa34.47■■■■□ 3.11
LIMS2-204ENST00000409286 NACADO15069 1562 aa34.29■■■■□ 3.08
LIMS2-204ENST00000409286 SUPT5HO00267 1087 aaKnown RBP34.07■■■■□ 3.04
LIMS2-204ENST00000409286 SCRIBQ14160 1630 aa33.95■■■■□ 3.02
LIMS2-204ENST00000409286 RB1CC1Q8TDY2 1594 aa33.91■■■■□ 3.02
LIMS2-204ENST00000409286 RSF1Q96T23 1441 aaPredicted RBP33.26■■■□□ 2.92
LIMS2-204ENST00000409286 UNC13AQ9UPW8 1703 aa33.17■■■□□ 2.9
LIMS2-204ENST00000409286 CECR2Q9BXF3 1484 aa33.05■■■□□ 2.88
LIMS2-204ENST00000409286 CHIC1Q5VXU3 224 aa32.92■■■□□ 2.86
LIMS2-204ENST00000409286 MROH2BQ7Z745 1585 aa32.91■■■□□ 2.86
LIMS2-204ENST00000409286 BAZ1AQ9NRL2 1556 aaPredicted RBP32.83■■■□□ 2.85
LIMS2-204ENST00000409286 BICRAQ9NZM4 1560 aa32.8■■■□□ 2.84
LIMS2-204ENST00000409286 WIZO95785 1651 aa32.63■■■□□ 2.81
LIMS2-204ENST00000409286 PABPN1Q86U42 306 aaKnown RBP eCLIP32.62■■■□□ 2.81
LIMS2-204ENST00000409286 SMARCA4P51532 1647 aa32.59■■■□□ 2.81
LIMS2-204ENST00000409286 TOP2AP11388 1531 aaKnown RBP32.34■■■□□ 2.77
LIMS2-204ENST00000409286 PEG3Q9GZU2 1588 aa32.19■■■□□ 2.74
LIMS2-204ENST00000409286 CCDC88BA6NC98 1476 aa32.06■■■□□ 2.72
LIMS2-204ENST00000409286 SMARCA2P51531 1590 aa32.04■■■□□ 2.72
LIMS2-204ENST00000409286 TRIM41Q8WV44 630 aa32.02■■■□□ 2.72
LIMS2-204ENST00000409286 ATAD2BQ9ULI0 1458 aa31.98■■■□□ 2.71
LIMS2-204ENST00000409286 EIF4G1Q04637 1599 aaKnown RBP31.96■■■□□ 2.71
LIMS2-204ENST00000409286 BAZ1BQ9UIG0 1483 aaKnown RBP31.81■■■□□ 2.68
LIMS2-204ENST00000409286 LOC105371045A0A1W2PR82 267 aa31.67■■■□□ 2.66
LIMS2-204ENST00000409286 NCAPD3P42695 1498 aa31.64■■■□□ 2.65
LIMS2-204ENST00000409286 HMGXB3Q12766 1538 aa31.63■■■□□ 2.65
LIMS2-204ENST00000409286 ABCC8Q09428 1581 aa31.48■■■□□ 2.63
LIMS2-204ENST00000409286 FAM9AQ8IZU1 332 aaPredicted RBP31.42■■■□□ 2.62
LIMS2-204ENST00000409286 WRNQ14191 1432 aaPredicted RBP eCLIP31.28■■■□□ 2.6
LIMS2-204ENST00000409286 CC2D2AQ9P2K1 1620 aa31.26■■■□□ 2.59
LIMS2-204ENST00000409286 EEA1Q15075 1411 aa31.14■■■□□ 2.58
LIMS2-204ENST00000409286 SYNJ1O43426 1573 aa31.08■■■□□ 2.57
LIMS2-204ENST00000409286 SOGA1O94964 1423 aa31.06■■■□□ 2.56
LIMS2-204ENST00000409286 CFTRP13569 1480 aa31.06■■■□□ 2.56
LIMS2-204ENST00000409286 CSRNP3Q8WYN3 585 aa30.95■■■□□ 2.55
LIMS2-204ENST00000409286 TOP2BQ02880 1626 aa30.94■■■□□ 2.54
LIMS2-204ENST00000409286 EHMT2Q96KQ7 1210 aa30.93■■■□□ 2.54
LIMS2-204ENST00000409286 PRDM2Q13029 1718 aa30.91■■■□□ 2.54
LIMS2-204ENST00000409286 RUSC2Q8N2Y8 1516 aa30.9■■■□□ 2.54
LIMS2-204ENST00000409286 CADPSQ9ULU8 1353 aa30.87■■■□□ 2.53
LIMS2-204ENST00000409286 BIVM-ERCC5R4GMW8 1640 aa30.87■■■□□ 2.53
LIMS2-204ENST00000409286 TNIKQ9UKE5 1360 aa30.75■■■□□ 2.51
LIMS2-204ENST00000409286 PCGF6Q9BYE7 350 aa30.75■■■□□ 2.51
LIMS2-204ENST00000409286 CUX1P39880 1505 aa30.74■■■□□ 2.51
LIMS2-204ENST00000409286 GOLGA3Q08378 1498 aa30.7■■■□□ 2.51
LIMS2-204ENST00000409286 TRIM26Q12899 539 aaPredicted RBP30.66■■■□□ 2.5
LIMS2-204ENST00000409286 CEP164Q9UPV0 1460 aa30.66■■■□□ 2.5
LIMS2-204ENST00000409286 KIF21BO75037 1637 aa30.64■■■□□ 2.5
LIMS2-204ENST00000409286 UBTFP17480 764 aaKnown RBP30.58■■■□□ 2.49
LIMS2-204ENST00000409286 CEP162Q5TB80 1403 aa30.57■■■□□ 2.48
LIMS2-204ENST00000409286 LAMC3Q9Y6N6 1575 aa30.51■■■□□ 2.48
LIMS2-204ENST00000409286 FANCD2Q9BXW9 1451 aa30.5■■■□□ 2.47
LIMS2-204ENST00000409286 KIF27Q86VH2 1401 aa30.46■■■□□ 2.47
LIMS2-204ENST00000409286 RAPGEF2Q9Y4G8 1499 aa30.39■■■□□ 2.46
LIMS2-204ENST00000409286 PRXQ9BXM0 1461 aa30.38■■■□□ 2.45
LIMS2-204ENST00000409286 NESP48681 1621 aa30.37■■■□□ 2.45
LIMS2-204ENST00000409286 ERICH3Q5RHP9 1530 aa30.36■■■□□ 2.45
LIMS2-204ENST00000409286 FGD5Q6ZNL6 1462 aa30.32■■■□□ 2.44
LIMS2-204ENST00000409286 HRCP23327 699 aa30.32■■■□□ 2.44
LIMS2-204ENST00000409286 DNMBPQ6XZF7 1577 aa30.3■■■□□ 2.44
LIMS2-204ENST00000409286 PDS5BQ9NTI5 1447 aa30.27■■■□□ 2.44
LIMS2-204ENST00000409286 DNAJC5BQ9UF47 199 aa30.25■■■□□ 2.43
LIMS2-204ENST00000409286 CUX2O14529 1486 aa30.24■■■□□ 2.43
LIMS2-204ENST00000409286 CLIP1P30622 1438 aa30.23■■■□□ 2.43
LIMS2-204ENST00000409286 TOPBP1Q92547 1522 aa30.22■■■□□ 2.43
LIMS2-204ENST00000409286 IGF1RP08069 1367 aa30.17■■■□□ 2.42
LIMS2-204ENST00000409286 POLA1P09884 1462 aaPredicted RBP30.11■■■□□ 2.41
LIMS2-204ENST00000409286 PPARGC1BQ86YN6 1023 aaKnown RBP30.11■■■□□ 2.41
LIMS2-204ENST00000409286 ABCA10Q8WWZ4 1543 aa30.09■■■□□ 2.41
LIMS2-204ENST00000409286 URB2Q14146 1524 aaKnown RBP30.08■■■□□ 2.41
LIMS2-204ENST00000409286 KIF21AQ7Z4S6 1674 aa30.04■■■□□ 2.4
LIMS2-204ENST00000409286 VPS8Q8N3P4 1428 aa30.04■■■□□ 2.4
LIMS2-204ENST00000409286 RAD54L2Q9Y4B4 1467 aa30.02■■■□□ 2.4
LIMS2-204ENST00000409286 CARMIL1Q5VZK9 1371 aa30.02■■■□□ 2.4
LIMS2-204ENST00000409286 RANGAP1P46060 587 aaPredicted RBP29.89■■■□□ 2.38
LIMS2-204ENST00000409286 WDR97A6NE52 1622 aa29.86■■■□□ 2.37
LIMS2-204ENST00000409286 ARAP1Q96P48 1450 aa29.85■■■□□ 2.37
LIMS2-204ENST00000409286 MRC2Q9UBG0 1479 aa29.84■■■□□ 2.37
LIMS2-204ENST00000409286 APLP2Q06481 763 aa29.82■■■□□ 2.36
LIMS2-204ENST00000409286 CUL7Q14999 1698 aa29.79■■■□□ 2.36
LIMS2-204ENST00000409286 ARHGAP35Q9NRY4 1499 aa29.76■■■□□ 2.35
LIMS2-204ENST00000409286 ABCA5Q8WWZ7 1642 aa29.75■■■□□ 2.35
LIMS2-204ENST00000409286 ZEB1P37275 1124 aaPredicted RBP29.75■■■□□ 2.35
LIMS2-204ENST00000409286 TTBK1Q5TCY1 1321 aaPredicted RBP29.73■■■□□ 2.35
LIMS2-204ENST00000409286 GAPVD1Q14C86 1478 aa29.71■■■□□ 2.35
LIMS2-204ENST00000409286 TDRD9Q8NDG6 1382 aaKnown RBP29.71■■■□□ 2.35
LIMS2-204ENST00000409286 TARBP1Q13395 1621 aaKnown RBP29.7■■■□□ 2.35
LIMS2-204ENST00000409286 WDR62O43379 1518 aa29.68■■■□□ 2.34
LIMS2-204ENST00000409286 ERCC6Q03468 1493 aa29.6■■■□□ 2.33
LIMS2-204ENST00000409286 IFT140Q96RY7 1462 aa29.54■■■□□ 2.32
LIMS2-204ENST00000409286 CTTNBP2Q8WZ74 1663 aa29.49■■■□□ 2.31
LIMS2-204ENST00000409286 THOC2Q8NI27 1593 aaKnown RBP29.49■■■□□ 2.31
LIMS2-204ENST00000409286 EFCAB5A4FU69 1503 aa29.49■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms