RNA–Protein interactions for RNA: ENST00000394849.1

UPK3B-203, Transcript of uroplakin 3B, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene UPK3B, Length 1,041 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3B-203ENST00000394849 NISCHQ9Y2I1 1504 aa50.02■■■■■ 5.6
UPK3B-203ENST00000394849 ABCC9O60706 1549 aa45.47■■■■■ 4.87
UPK3B-203ENST00000394849 CCDC180Q9P1Z9 1646 aa45.15■■■■■ 4.82
UPK3B-203ENST00000394849 RB1CC1Q8TDY2 1594 aa43.21■■■■■ 4.51
UPK3B-203ENST00000394849 DNAJC5BQ9UF47 199 aa43.04■■■■■ 4.48
UPK3B-203ENST00000394849 NACADO15069 1562 aa42.82■■■■■ 4.45
UPK3B-203ENST00000394849 DCAF8L2P0C7V8 631 aa42.36■■■■■ 4.37
UPK3B-203ENST00000394849 PABPN1Q86U42 306 aaKnown RBP eCLIP42.24■■■■■ 4.35
UPK3B-203ENST00000394849 UNC13AQ9UPW8 1703 aa42.13■■■■■ 4.33
UPK3B-203ENST00000394849 MYO15BQ96JP2 1530 aa42.13■■■■■ 4.33
UPK3B-203ENST00000394849 BICRAQ9NZM4 1560 aa41.87■■■■■ 4.29
UPK3B-203ENST00000394849 SHROOM4Q9ULL8 1493 aa41.46■■■■■ 4.23
UPK3B-203ENST00000394849 DCAF1Q9Y4B6 1507 aa41.38■■■■■ 4.21
UPK3B-203ENST00000394849 ZCCHC6Q5VYS8 1495 aaKnown RBP41.34■■■■■ 4.21
UPK3B-203ENST00000394849 CC2D2AQ9P2K1 1620 aa41.11■■■■■ 4.17
UPK3B-203ENST00000394849 CECR2Q9BXF3 1484 aa41.09■■■■■ 4.17
UPK3B-203ENST00000394849 SCRIBQ14160 1630 aa40.97■■■■■ 4.15
UPK3B-203ENST00000394849 EIF4G1Q04637 1599 aaKnown RBP40.92■■■■■ 4.14
UPK3B-203ENST00000394849 DNAJC5Q9H3Z4 198 aa40.02■■■■■ 4
UPK3B-203ENST00000394849 CUX2O14529 1486 aa39.54■■■■□ 3.92
UPK3B-203ENST00000394849 NCAPD3P42695 1498 aa39.52■■■■□ 3.92
UPK3B-203ENST00000394849 ERCC6Q03468 1493 aa39.38■■■■□ 3.9
UPK3B-203ENST00000394849 ATAD2BQ9ULI0 1458 aa39.27■■■■□ 3.88
UPK3B-203ENST00000394849 SMARCA2P51531 1590 aa39.21■■■■□ 3.87
UPK3B-203ENST00000394849 HMGXB3Q12766 1538 aa39.18■■■■□ 3.86
UPK3B-203ENST00000394849 SMARCA4P51532 1647 aa39.11■■■■□ 3.85
UPK3B-203ENST00000394849 NESP48681 1621 aa38.9■■■■□ 3.82
UPK3B-203ENST00000394849 BAZ1AQ9NRL2 1556 aaPredicted RBP38.9■■■■□ 3.82
UPK3B-203ENST00000394849 BAZ1BQ9UIG0 1483 aaKnown RBP38.89■■■■□ 3.82
UPK3B-203ENST00000394849 PEG3Q9GZU2 1588 aa38.79■■■■□ 3.8
UPK3B-203ENST00000394849 LAMC3Q9Y6N6 1575 aa38.71■■■■□ 3.79
UPK3B-203ENST00000394849 THOC2Q8NI27 1593 aaKnown RBP38.66■■■■□ 3.78
UPK3B-203ENST00000394849 PDS5BQ9NTI5 1447 aa38.53■■■■□ 3.76
UPK3B-203ENST00000394849 MROH2BQ7Z745 1585 aa38.47■■■■□ 3.75
UPK3B-203ENST00000394849 KIF21AQ7Z4S6 1674 aa38.43■■■■□ 3.74
UPK3B-203ENST00000394849 CADPSQ9ULU8 1353 aa38.28■■■■□ 3.72
UPK3B-203ENST00000394849 MRC2Q9UBG0 1479 aa38.15■■■■□ 3.7
UPK3B-203ENST00000394849 WDR62O43379 1518 aa38.08■■■■□ 3.69
UPK3B-203ENST00000394849 TRIM41Q8WV44 630 aa37.97■■■■□ 3.67
UPK3B-203ENST00000394849 WIZO95785 1651 aa37.97■■■■□ 3.67
UPK3B-203ENST00000394849 CEP164Q9UPV0 1460 aa37.92■■■■□ 3.66
UPK3B-203ENST00000394849 FANCD2Q9BXW9 1451 aa37.81■■■■□ 3.64
UPK3B-203ENST00000394849 CFTRP13569 1480 aa37.73■■■■□ 3.63
UPK3B-203ENST00000394849 OSCARQ8IYS5 282 aa37.64■■■■□ 3.62
UPK3B-203ENST00000394849 RSF1Q96T23 1441 aaPredicted RBP37.53■■■■□ 3.6
UPK3B-203ENST00000394849 TOP2AP11388 1531 aaKnown RBP37.53■■■■□ 3.6
UPK3B-203ENST00000394849 URB2Q14146 1524 aaKnown RBP37.48■■■■□ 3.59
UPK3B-203ENST00000394849 PRDM2Q13029 1718 aa37.33■■■■□ 3.57
UPK3B-203ENST00000394849 IFT140Q96RY7 1462 aa37.2■■■■□ 3.54
UPK3B-203ENST00000394849 RIMBP3CA6NJZ7 1639 aa37.11■■■■□ 3.53
UPK3B-203ENST00000394849 RIMBP3BA6NNM3 1639 aa37.11■■■■□ 3.53
UPK3B-203ENST00000394849 RIMBP3Q9UFD9 1639 aa37.11■■■■□ 3.53
UPK3B-203ENST00000394849 CCDC88BA6NC98 1476 aa37.08■■■■□ 3.53
UPK3B-203ENST00000394849 ZNF608Q9ULD9 1512 aaPredicted RBP37.07■■■■□ 3.53
UPK3B-203ENST00000394849 ABCC8Q09428 1581 aa37.06■■■■□ 3.52
UPK3B-203ENST00000394849 TOPBP1Q92547 1522 aa37.03■■■■□ 3.52
UPK3B-203ENST00000394849 ARHGEF11O15085 1522 aa36.96■■■■□ 3.51
UPK3B-203ENST00000394849 EIF4G3O43432 1585 aaKnown RBP36.88■■■■□ 3.49
UPK3B-203ENST00000394849 DNMBPQ6XZF7 1577 aa36.88■■■■□ 3.49
UPK3B-203ENST00000394849 TARBP1Q13395 1621 aaKnown RBP36.74■■■■□ 3.47
UPK3B-203ENST00000394849 CYB5RLQ6IPT4 315 aa36.72■■■■□ 3.47
UPK3B-203ENST00000394849 AQRO60306 1485 aaKnown RBP eCLIP36.7■■■■□ 3.47
UPK3B-203ENST00000394849 CHD1O14646 1710 aa36.7■■■■□ 3.47
UPK3B-203ENST00000394849 POLA1P09884 1462 aaPredicted RBP36.62■■■■□ 3.45
UPK3B-203ENST00000394849 FBLN2P98095 1184 aa36.58■■■■□ 3.45
UPK3B-203ENST00000394849 ARAP1Q96P48 1450 aa36.54■■■■□ 3.44
UPK3B-203ENST00000394849 TRHP20396 242 aaPredicted RBP36.48■■■■□ 3.43
UPK3B-203ENST00000394849 SOGA1O94964 1423 aa36.47■■■■□ 3.43
UPK3B-203ENST00000394849 WDR97A6NE52 1622 aa36.47■■■■□ 3.43
UPK3B-203ENST00000394849 RAD54L2Q9Y4B4 1467 aa36.43■■■■□ 3.42
UPK3B-203ENST00000394849 TDRD9Q8NDG6 1382 aaKnown RBP36.4■■■■□ 3.42
UPK3B-203ENST00000394849 SNAPC4Q5SXM2 1469 aa36.32■■■■□ 3.41
UPK3B-203ENST00000394849 FGD5Q6ZNL6 1462 aa36.31■■■■□ 3.4
UPK3B-203ENST00000394849 MAGI1Q96QZ7 1491 aaPredicted RBP36.31■■■■□ 3.4
UPK3B-203ENST00000394849 CHMP7Q8WUX9 453 aaPredicted RBP36.3■■■■□ 3.4
UPK3B-203ENST00000394849 CLASP1Q7Z460 1538 aa36.29■■■■□ 3.4
UPK3B-203ENST00000394849 SYNJ1O43426 1573 aa36.28■■■■□ 3.4
UPK3B-203ENST00000394849 GRIN2BQ13224 1484 aa36.23■■■■□ 3.39
UPK3B-203ENST00000394849 CUX1P39880 1505 aa36.18■■■■□ 3.38
UPK3B-203ENST00000394849 SYNJ2O15056 1496 aa36.17■■■■□ 3.38
UPK3B-203ENST00000394849 GAPVD1Q14C86 1478 aa36.02■■■■□ 3.36
UPK3B-203ENST00000394849 PBRM1Q86U86 1689 aa36■■■■□ 3.35
UPK3B-203ENST00000394849 ABCA10Q8WWZ4 1543 aa35.93■■■■□ 3.34
UPK3B-203ENST00000394849 ABCA5Q8WWZ7 1642 aa35.87■■■■□ 3.33
UPK3B-203ENST00000394849 AEBP2Q6ZN18 517 aaPredicted RBP35.82■■■■□ 3.32
UPK3B-203ENST00000394849 GRIN2AQ12879 1464 aa35.74■■■■□ 3.31
UPK3B-203ENST00000394849 WRNQ14191 1432 aaPredicted RBP eCLIP35.72■■■■□ 3.31
UPK3B-203ENST00000394849 NUP160Q12769 1436 aa35.65■■■■□ 3.3
UPK3B-203ENST00000394849 ADAMTS12P58397 1594 aa35.64■■■■□ 3.3
UPK3B-203ENST00000394849 CEP170Q5SW79 1584 aa35.6■■■■□ 3.29
UPK3B-203ENST00000394849 ERCC6L2Q5T890 1561 aa35.59■■■■□ 3.29
UPK3B-203ENST00000394849 FHAD1B1AJZ9 1412 aa35.57■■■■□ 3.28
UPK3B-203ENST00000394849 SHROOM2Q13796 1616 aa35.54■■■■□ 3.28
UPK3B-203ENST00000394849 TOP2BQ02880 1626 aa35.53■■■■□ 3.28
UPK3B-203ENST00000394849 BIVM-ERCC5R4GMW8 1640 aa35.53■■■■□ 3.28
UPK3B-203ENST00000394849 ERICH3Q5RHP9 1530 aa35.49■■■■□ 3.27
UPK3B-203ENST00000394849 SUPT5HO00267 1087 aaKnown RBP35.45■■■■□ 3.27
UPK3B-203ENST00000394849 PRG4Q92954 1404 aaPredicted RBP35.32■■■■□ 3.25
UPK3B-203ENST00000394849 KIF13AQ9H1H9 1805 aa35.29■■■■□ 3.24
UPK3B-203ENST00000394849 JPH4Q96JJ6 628 aa35.29■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms