RNA–Protein interactions for RNA: ENST00000301364.9

TSR1-201, Transcript of TSR1, ribosome maturation factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSR1, Length 5,188 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSR1-201ENST00000301364 NISCHQ9Y2I1 1504 aa33.51■■■□□ 2.95
TSR1-201ENST00000301364 DCAF8L2P0C7V8 631 aa33.01■■■□□ 2.88
TSR1-201ENST00000301364 SUPT5HO00267 1087 aaKnown RBP32.1■■■□□ 2.73
TSR1-201ENST00000301364 SHROOM4Q9ULL8 1493 aa31.62■■■□□ 2.65
TSR1-201ENST00000301364 EHMT2Q96KQ7 1210 aa30.46■■■□□ 2.47
TSR1-201ENST00000301364 PCGF6Q9BYE7 350 aa30.31■■■□□ 2.44
TSR1-201ENST00000301364 FAM9AQ8IZU1 332 aaPredicted RBP30.08■■■□□ 2.41
TSR1-201ENST00000301364 APLP2Q06481 763 aa30.04■■■□□ 2.4
TSR1-201ENST00000301364 PELP1Q8IZL8 1130 aaKnown RBP29.97■■■□□ 2.39
TSR1-201ENST00000301364 ZEB1P37275 1124 aaPredicted RBP29.93■■■□□ 2.38
TSR1-201ENST00000301364 TRIM41Q8WV44 630 aa29.86■■■□□ 2.37
TSR1-201ENST00000301364 TTBK1Q5TCY1 1321 aaPredicted RBP29.52■■■□□ 2.32
TSR1-201ENST00000301364 CENPBP07199 599 aaPredicted RBP29.49■■■□□ 2.31
TSR1-201ENST00000301364 CCER1Q8TC90 406 aaPredicted RBP29.48■■■□□ 2.31
TSR1-201ENST00000301364 TRIM26Q12899 539 aaPredicted RBP29.3■■■□□ 2.28
TSR1-201ENST00000301364 HRCP23327 699 aa29.29■■■□□ 2.28
TSR1-201ENST00000301364 CHIC1Q5VXU3 224 aa29.26■■■□□ 2.27
TSR1-201ENST00000301364 UBTFP17480 764 aaKnown RBP29.21■■■□□ 2.27
TSR1-201ENST00000301364 RANGAP1P46060 587 aaPredicted RBP29.08■■■□□ 2.25
TSR1-201ENST00000301364 LOC105371045A0A1W2PR82 267 aa28.93■■■□□ 2.22
TSR1-201ENST00000301364 PPARGC1BQ86YN6 1023 aaKnown RBP28.83■■■□□ 2.21
TSR1-201ENST00000301364 ATP1B4Q9UN42 357 aaPredicted RBP28.72■■■□□ 2.19
TSR1-201ENST00000301364 YTHDC1Q96MU7 727 aaKnown RBP28.63■■■□□ 2.17
TSR1-201ENST00000301364 MYT1Q01538 1121 aa28.58■■■□□ 2.17
TSR1-201ENST00000301364 ERICH6Q7L0X2 663 aa28.52■■■□□ 2.16
TSR1-201ENST00000301364 NEFLP07196 543 aa28.51■■■□□ 2.15
TSR1-201ENST00000301364 HNRNPUL2Q1KMD3 747 aaKnown RBP28.25■■■□□ 2.11
TSR1-201ENST00000301364 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.18■■■□□ 2.1
TSR1-201ENST00000301364 ITGAEP38570 1179 aa28.11■■■□□ 2.09
TSR1-201ENST00000301364 DIEXFQ68CQ4 756 aaKnown RBP28.11■■■□□ 2.09
TSR1-201ENST00000301364 ZCCHC6Q5VYS8 1495 aaKnown RBP27.9■■■□□ 2.06
TSR1-201ENST00000301364 ABCC9O60706 1549 aa27.9■■■□□ 2.06
TSR1-201ENST00000301364 DCAF1Q9Y4B6 1507 aa27.7■■■□□ 2.02
TSR1-201ENST00000301364 PABPN1Q86U42 306 aaKnown RBP eCLIP27.64■■■□□ 2.02
TSR1-201ENST00000301364 ZNF316A6NFI3 1004 aaPredicted RBP27.57■■■□□ 2
TSR1-201ENST00000301364 CSRNP3Q8WYN3 585 aa27.56■■■□□ 2
TSR1-201ENST00000301364 GTF3C3Q9Y5Q9 886 aa27.55■■■□□ 2
TSR1-201ENST00000301364 POLR3GLQ9BT43 218 aa27.54■■■□□ 2
TSR1-201ENST00000301364 FAM50AQ14320 339 aaKnown RBP27.54■■■□□ 2
TSR1-201ENST00000301364 CCDC180Q9P1Z9 1646 aa27.46■■□□□ 1.99
TSR1-201ENST00000301364 ACIN1Q9UKV3 1341 aaKnown RBP27.4■■□□□ 1.98
TSR1-201ENST00000301364 DAXXQ9UER7 740 aaPredicted RBP27.35■■□□□ 1.97
TSR1-201ENST00000301364 NEUROD1Q13562 356 aa27.34■■□□□ 1.97
TSR1-201ENST00000301364 SCRIBQ14160 1630 aa27.31■■□□□ 1.96
TSR1-201ENST00000301364 TRIM52Q96A61 297 aa27.25■■□□□ 1.95
TSR1-201ENST00000301364 ANP32CO43423 234 aa27.25■■□□□ 1.95
TSR1-201ENST00000301364 CNGB1Q14028 1251 aaPredicted RBP27.24■■□□□ 1.95
TSR1-201ENST00000301364 MYT1LQ9UL68 1186 aa27.21■■□□□ 1.95
TSR1-201ENST00000301364 MYO15BQ96JP2 1530 aa27.1■■□□□ 1.93
TSR1-201ENST00000301364 BCANQ96GW7 911 aa27.05■■□□□ 1.92
TSR1-201ENST00000301364 CLSPNQ9HAW4 1339 aa27.01■■□□□ 1.91
TSR1-201ENST00000301364 RTL5Q5HYW3 569 aaPredicted RBP27■■□□□ 1.91
TSR1-201ENST00000301364 CDK11AQ9UQ88 783 aaPredicted RBP26.94■■□□□ 1.9
TSR1-201ENST00000301364 RSF1Q96T23 1441 aaPredicted RBP26.92■■□□□ 1.9
TSR1-201ENST00000301364 P3H3Q8IVL6 736 aa26.89■■□□□ 1.9
TSR1-201ENST00000301364 ZNF326Q5BKZ1 582 aaKnown RBP26.81■■□□□ 1.88
TSR1-201ENST00000301364 EEA1Q15075 1411 aa26.77■■□□□ 1.88
TSR1-201ENST00000301364 SLC4A1APQ9BWU0 796 aaKnown RBP26.76■■□□□ 1.87
TSR1-201ENST00000301364 TONSLQ96HA7 1378 aa26.7■■□□□ 1.86
TSR1-201ENST00000301364 CLIP1P30622 1438 aa26.68■■□□□ 1.86
TSR1-201ENST00000301364 SCAF1Q9H7N4 1312 aaKnown RBP26.65■■□□□ 1.86
TSR1-201ENST00000301364 CEP162Q5TB80 1403 aa26.62■■□□□ 1.85
TSR1-201ENST00000301364 GOLGA3Q08378 1498 aa26.59■■□□□ 1.85
TSR1-201ENST00000301364 DDX10Q13206 875 aaKnown RBP26.59■■□□□ 1.85
TSR1-201ENST00000301364 FBLN2P98095 1184 aa26.58■■□□□ 1.85
TSR1-201ENST00000301364 FKBP8Q14318 412 aa26.58■■□□□ 1.85
TSR1-201ENST00000301364 MIER1Q8N108 512 aa26.54■■□□□ 1.84
TSR1-201ENST00000301364 RB1CC1Q8TDY2 1594 aa26.54■■□□□ 1.84
TSR1-201ENST00000301364 TNIKQ9UKE5 1360 aa26.52■■□□□ 1.84
TSR1-201ENST00000301364 NACADO15069 1562 aa26.52■■□□□ 1.84
TSR1-201ENST00000301364 ARID3CA6NKF2 412 aa26.52■■□□□ 1.84
TSR1-201ENST00000301364 HNRNPUQ00839 825 aaKnown RBP eCLIP26.46■■□□□ 1.83
TSR1-201ENST00000301364 ZNF777Q9ULD5 760 aaPredicted RBP26.44■■□□□ 1.82
TSR1-201ENST00000301364 WRNQ14191 1432 aaPredicted RBP eCLIP26.43■■□□□ 1.82
TSR1-201ENST00000301364 ANP32AP39687 249 aaKnown RBP26.43■■□□□ 1.82
TSR1-201ENST00000301364 CEP164Q9UPV0 1460 aa26.35■■□□□ 1.81
TSR1-201ENST00000301364 MTUS2Q5JR59 1369 aa26.32■■□□□ 1.8
TSR1-201ENST00000301364 CANXP27824 592 aaKnown RBP26.29■■□□□ 1.8
TSR1-201ENST00000301364 FAM9BQ8IZU0 186 aa26.28■■□□□ 1.8
TSR1-201ENST00000301364 BAZ1AQ9NRL2 1556 aaPredicted RBP26.28■■□□□ 1.8
TSR1-201ENST00000301364 CHIC2Q9UKJ5 165 aa26.25■■□□□ 1.79
TSR1-201ENST00000301364 ZBTB47Q9UFB7 747 aaPredicted RBP26.19■■□□□ 1.78
TSR1-201ENST00000301364 CECR2Q9BXF3 1484 aa26.19■■□□□ 1.78
TSR1-201ENST00000301364 BAZ1BQ9UIG0 1483 aaKnown RBP26.17■■□□□ 1.78
TSR1-201ENST00000301364 KIF27Q86VH2 1401 aa26.17■■□□□ 1.78
TSR1-201ENST00000301364 MRS2Q9HD23 443 aa26.15■■□□□ 1.78
TSR1-201ENST00000301364 TMC1Q8TDI8 760 aa26.13■■□□□ 1.77
TSR1-201ENST00000301364 EIF4G2P78344 907 aaKnown RBP eCLIP26.13■■□□□ 1.77
TSR1-201ENST00000301364 NEFMP07197 916 aa26.12■■□□□ 1.77
TSR1-201ENST00000301364 NPM2Q86SE8 214 aaKnown RBP26.1■■□□□ 1.77
TSR1-201ENST00000301364 CCDC136Q96JN2 1154 aa26.08■■□□□ 1.77
TSR1-201ENST00000301364 HIRIP3Q9BW71 556 aaPredicted RBP26.07■■□□□ 1.76
TSR1-201ENST00000301364 TSPY4P0CV99 314 aa26.04■■□□□ 1.76
TSR1-201ENST00000301364 TSPY10P0CW01 314 aa26.04■■□□□ 1.76
TSR1-201ENST00000301364 SOGA1O94964 1423 aa26■■□□□ 1.75
TSR1-201ENST00000301364 RRP7BPQ9NSQ0 103 aa25.99■■□□□ 1.75
TSR1-201ENST00000301364 MROH2BQ7Z745 1585 aa25.93■■□□□ 1.74
TSR1-201ENST00000301364 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.92■■□□□ 1.74
TSR1-201ENST00000301364 SALL2Q9Y467 1007 aaPredicted RBP25.91■■□□□ 1.74
TSR1-201ENST00000301364 CCNB3Q8WWL7 1395 aa25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms