Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
RNF4P78317 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RNF4P78317 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.84■■□□□ 1.41
RNF4P78317 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.84■■□□□ 1.41
RNF4P78317 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.84■■□□□ 1.41
RNF4P78317 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
RNF4P78317 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RNF4P78317 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RNF4P78317 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
RNF4P78317 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RNF4P78317 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RNF4P78317 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.82■■□□□ 1.4
RNF4P78317 MIR3648-2-201ENST00000581792 180 ntBASIC23.82■■□□□ 1.4
RNF4P78317 MIR3648-1-201ENST00000615959 180 ntBASIC23.82■■□□□ 1.4
RNF4P78317 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RNF4P78317 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RNF4P78317 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RNF4P78317 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF4P78317 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RNF4P78317 CR559946.2-201ENST00000623684 991 ntBASIC23.81■■□□□ 1.4
RNF4P78317 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.81■■□□□ 1.4
RNF4P78317 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
RNF4P78317 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF4P78317 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RNF4P78317 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RNF4P78317 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RNF4P78317 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RNF4P78317 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.79■■□□□ 1.4
RNF4P78317 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
RNF4P78317 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF4P78317 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF4P78317 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
RNF4P78317 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.79■■□□□ 1.4
RNF4P78317 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RNF4P78317 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.77■■□□□ 1.4
RNF4P78317 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
RNF4P78317 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RNF4P78317 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.77■■□□□ 1.4
RNF4P78317 AC016575.1-201ENST00000607026 382 ntBASIC23.77■■□□□ 1.4
RNF4P78317 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RNF4P78317 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.77■■□□□ 1.4
RNF4P78317 HLA-V-202ENST00000446817 847 ntBASIC23.76■■□□□ 1.39
RNF4P78317 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RNF4P78317 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.76■■□□□ 1.39
RNF4P78317 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.75■■□□□ 1.39
RNF4P78317 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.74■■□□□ 1.39
RNF4P78317 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.74■■□□□ 1.39
RNF4P78317 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.74■■□□□ 1.39
RNF4P78317 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.74■■□□□ 1.39
RNF4P78317 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.74■■□□□ 1.39
RNF4P78317 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RNF4P78317 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.73■■□□□ 1.39
RNF4P78317 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.73■■□□□ 1.39
RNF4P78317 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
RNF4P78317 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RNF4P78317 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RNF4P78317 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.72■■□□□ 1.39
RNF4P78317 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC23.72■■□□□ 1.39
RNF4P78317 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RNF4P78317 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.71■■□□□ 1.39
RNF4P78317 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.71■■□□□ 1.39
RNF4P78317 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RNF4P78317 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
RNF4P78317 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.7■■□□□ 1.39
RNF4P78317 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
RNF4P78317 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.7■■□□□ 1.38
RNF4P78317 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.7■■□□□ 1.38
RNF4P78317 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RNF4P78317 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
RNF4P78317 AC100797.4-201ENST00000631653 1827 ntBASIC23.69■■□□□ 1.38
RNF4P78317 MIR639-201ENST00000384974 98 ntBASIC23.69■■□□□ 1.38
RNF4P78317 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
RNF4P78317 ABCB10P3-201ENST00000561950 2166 ntBASIC23.69■■□□□ 1.38
RNF4P78317 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RNF4P78317 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.68■■□□□ 1.38
RNF4P78317 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.68■■□□□ 1.38
RNF4P78317 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RNF4P78317 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.67■■□□□ 1.38
RNF4P78317 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RNF4P78317 AC110285.7-201ENST00000624417 1536 ntBASIC23.67■■□□□ 1.38
RNF4P78317 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23.66■■□□□ 1.38
RNF4P78317 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RNF4P78317 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RNF4P78317 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RNF4P78317 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
RNF4P78317 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RNF4P78317 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RNF4P78317 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RNF4P78317 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.64■■□□□ 1.38
RNF4P78317 AC139426.1-201ENST00000568218 2529 ntBASIC23.64■■□□□ 1.38
RNF4P78317 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
RNF4P78317 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
RNF4P78317 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RNF4P78317 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.62■■□□□ 1.37
RNF4P78317 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RNF4P78317 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
RNF4P78317 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.62■■□□□ 1.37
RNF4P78317 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.62■■□□□ 1.37
RNF4P78317 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.61■■□□□ 1.37
RNF4P78317 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms