Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CLPTM1O96005 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.98■■□□□ 1.43
CLPTM1O96005 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.98■■□□□ 1.43
CLPTM1O96005 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
CLPTM1O96005 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CLPTM1O96005 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.97■■□□□ 1.43
CLPTM1O96005 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.96■■□□□ 1.43
CLPTM1O96005 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
CLPTM1O96005 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CLPTM1O96005 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.95■■□□□ 1.42
CLPTM1O96005 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
CLPTM1O96005 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CLPTM1O96005 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
CLPTM1O96005 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CLPTM1O96005 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.93■■□□□ 1.42
CLPTM1O96005 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
CLPTM1O96005 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CLPTM1O96005 RARRES2P7-201ENST00000567349 469 ntBASIC23.91■■□□□ 1.42
CLPTM1O96005 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CLPTM1O96005 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.9■■□□□ 1.42
CLPTM1O96005 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.9■■□□□ 1.42
CLPTM1O96005 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CLPTM1O96005 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CLPTM1O96005 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.9■■□□□ 1.42
CLPTM1O96005 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CLPTM1O96005 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
CLPTM1O96005 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CLPTM1O96005 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
CLPTM1O96005 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CLPTM1O96005 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CLPTM1O96005 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CLPTM1O96005 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CLPTM1O96005 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
CLPTM1O96005 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
CLPTM1O96005 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.87■■□□□ 1.41
CLPTM1O96005 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.87■■□□□ 1.41
CLPTM1O96005 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
CLPTM1O96005 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CLPTM1O96005 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
CLPTM1O96005 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CLPTM1O96005 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.85■■□□□ 1.41
CLPTM1O96005 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.85■■□□□ 1.41
CLPTM1O96005 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.85■■□□□ 1.41
CLPTM1O96005 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
CLPTM1O96005 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.85■■□□□ 1.41
CLPTM1O96005 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLPTM1O96005 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLPTM1O96005 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.84■■□□□ 1.41
CLPTM1O96005 AC093323.1-202ENST00000635031 2045 ntBASIC23.84■■□□□ 1.41
CLPTM1O96005 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLPTM1O96005 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
CLPTM1O96005 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
CLPTM1O96005 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CLPTM1O96005 AC020928.2-201ENST00000588717 2197 ntBASIC23.82■■□□□ 1.4
CLPTM1O96005 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CLPTM1O96005 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CLPTM1O96005 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLPTM1O96005 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLPTM1O96005 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.81■■□□□ 1.4
CLPTM1O96005 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLPTM1O96005 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLPTM1O96005 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLPTM1O96005 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.8■■□□□ 1.4
CLPTM1O96005 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLPTM1O96005 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLPTM1O96005 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLPTM1O96005 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLPTM1O96005 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
CLPTM1O96005 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLPTM1O96005 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.79■■□□□ 1.4
CLPTM1O96005 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
CLPTM1O96005 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CLPTM1O96005 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC23.78■■□□□ 1.4
CLPTM1O96005 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CLPTM1O96005 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.78■■□□□ 1.4
CLPTM1O96005 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.77■■□□□ 1.4
CLPTM1O96005 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CLPTM1O96005 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.76■■□□□ 1.39
CLPTM1O96005 SETD8P1-201ENST00000623146 1180 ntBASIC23.76■■□□□ 1.39
CLPTM1O96005 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CLPTM1O96005 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CLPTM1O96005 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CLPTM1O96005 AC091060.1-201ENST00000623524 1766 ntBASIC23.75■■□□□ 1.39
CLPTM1O96005 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CLPTM1O96005 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CLPTM1O96005 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.75■■□□□ 1.39
CLPTM1O96005 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.75■■□□□ 1.39
CLPTM1O96005 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.75■■□□□ 1.39
CLPTM1O96005 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
CLPTM1O96005 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLPTM1O96005 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CLPTM1O96005 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.73■■□□□ 1.39
CLPTM1O96005 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
CLPTM1O96005 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CLPTM1O96005 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLPTM1O96005 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLPTM1O96005 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLPTM1O96005 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLPTM1O96005 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLPTM1O96005 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms