Protein–RNA interactions for Protein: A6NCW0

USP17L3, Ubiquitin carboxyl-terminal hydrolase 17-like protein 3, humanhuman

Predictions only

Length 530 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP17L3A6NCW0 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
USP17L3A6NCW0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
USP17L3A6NCW0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
USP17L3A6NCW0 AC135983.2-203ENST00000454486 1613 ntBASIC31.42■■■□□ 2.62
USP17L3A6NCW0 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
USP17L3A6NCW0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.42■■■□□ 2.62
USP17L3A6NCW0 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
USP17L3A6NCW0 WHAMMP2-203ENST00000563942 1603 ntBASIC31.41■■■□□ 2.62
USP17L3A6NCW0 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
USP17L3A6NCW0 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
USP17L3A6NCW0 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP17L3A6NCW0 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.39■■■□□ 2.62
USP17L3A6NCW0 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.39■■■□□ 2.62
USP17L3A6NCW0 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP17L3A6NCW0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
USP17L3A6NCW0 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
USP17L3A6NCW0 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
USP17L3A6NCW0 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC31.38■■■□□ 2.61
USP17L3A6NCW0 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.38■■■□□ 2.61
USP17L3A6NCW0 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP17L3A6NCW0 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.37■■■□□ 2.61
USP17L3A6NCW0 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP17L3A6NCW0 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.36■■■□□ 2.61
USP17L3A6NCW0 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.36■■■□□ 2.61
USP17L3A6NCW0 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
USP17L3A6NCW0 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.35■■■□□ 2.61
USP17L3A6NCW0 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP17L3A6NCW0 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.34■■■□□ 2.61
USP17L3A6NCW0 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
USP17L3A6NCW0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
USP17L3A6NCW0 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
USP17L3A6NCW0 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP17L3A6NCW0 NTF6A-201ENST00000591175 560 ntBASIC31.32■■■□□ 2.6
USP17L3A6NCW0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP17L3A6NCW0 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP17L3A6NCW0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
USP17L3A6NCW0 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.31■■■□□ 2.6
USP17L3A6NCW0 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
USP17L3A6NCW0 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.3■■■□□ 2.6
USP17L3A6NCW0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
USP17L3A6NCW0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.3■■■□□ 2.6
USP17L3A6NCW0 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP17L3A6NCW0 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
USP17L3A6NCW0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
USP17L3A6NCW0 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.28■■■□□ 2.6
USP17L3A6NCW0 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP17L3A6NCW0 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
USP17L3A6NCW0 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
USP17L3A6NCW0 AC110285.7-201ENST00000624417 1536 ntBASIC31.27■■■□□ 2.6
USP17L3A6NCW0 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.6
USP17L3A6NCW0 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.26■■■□□ 2.59
USP17L3A6NCW0 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
USP17L3A6NCW0 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP17L3A6NCW0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
USP17L3A6NCW0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP17L3A6NCW0 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
USP17L3A6NCW0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
USP17L3A6NCW0 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
USP17L3A6NCW0 AL135925.1-201ENST00000605920 1701 ntBASIC31.24■■■□□ 2.59
USP17L3A6NCW0 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
USP17L3A6NCW0 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP17L3A6NCW0 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
USP17L3A6NCW0 AC012354.3-201ENST00000623734 483 ntBASIC31.22■■■□□ 2.59
USP17L3A6NCW0 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
USP17L3A6NCW0 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
USP17L3A6NCW0 AC148477.6-201ENST00000623746 465 ntBASIC31.21■■■□□ 2.59
USP17L3A6NCW0 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.2■■■□□ 2.59
USP17L3A6NCW0 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
USP17L3A6NCW0 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.2■■■□□ 2.59
USP17L3A6NCW0 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
USP17L3A6NCW0 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.19■■■□□ 2.58
USP17L3A6NCW0 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
USP17L3A6NCW0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.18■■■□□ 2.58
USP17L3A6NCW0 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
USP17L3A6NCW0 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.16■■■□□ 2.58
USP17L3A6NCW0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP17L3A6NCW0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP17L3A6NCW0 AC060814.1-201ENST00000554326 538 ntBASIC31.16■■■□□ 2.58
USP17L3A6NCW0 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
USP17L3A6NCW0 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP17L3A6NCW0 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP17L3A6NCW0 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP17L3A6NCW0 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
USP17L3A6NCW0 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.14■■■□□ 2.58
USP17L3A6NCW0 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.14■■■□□ 2.58
USP17L3A6NCW0 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
USP17L3A6NCW0 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.13■■■□□ 2.57
USP17L3A6NCW0 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
USP17L3A6NCW0 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP17L3A6NCW0 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.1■■■□□ 2.57
USP17L3A6NCW0 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
USP17L3A6NCW0 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
USP17L3A6NCW0 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USP17L3A6NCW0 MIR219A2-201ENST00000608502 1504 ntBASIC31.08■■■□□ 2.57
USP17L3A6NCW0 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP17L3A6NCW0 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP17L3A6NCW0 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
USP17L3A6NCW0 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
USP17L3A6NCW0 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
USP17L3A6NCW0 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.07■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms