Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MICU1-205ENST00000476605 1933 ntTSL 211.15□□□□□ -0.622e-12■■□□□ 12.6
DDX55Q8NHQ9 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.126e-7■■□□□ 12.6
DDX55Q8NHQ9 TRIM28-214ENST00000600840 338 ntTSL 210.76□□□□□ -0.691e-7■■□□□ 12.6
DDX55Q8NHQ9 MRPL28-205ENST00000447696 722 ntTSL 329.43■■■□□ 2.31e-7■■□□□ 12.6
DDX55Q8NHQ9 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.922e-8■■□□□ 12.6
DDX55Q8NHQ9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.722e-8■■□□□ 12.6
DDX55Q8NHQ9 ACTN4-211ENST00000589528 441 ntTSL 219.23■□□□□ 0.671e-21■■□□□ 12.6
DDX55Q8NHQ9 SUN1-235ENST00000497943 2824 ntTSL 218.31■□□□□ 0.522e-8■■□□□ 12.6
DDX55Q8NHQ9 LSM7-207ENST00000591745 543 ntTSL 216.21■□□□□ 0.191e-40■■□□□ 12.6
DDX55Q8NHQ9 ERCC2-204ENST00000391945 4153 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.211e-6■■□□□ 12.6
DDX55Q8NHQ9 GART-203ENST00000381815 3341 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.422e-7■■□□□ 12.6
DDX55Q8NHQ9 SUN1-213ENST00000433212 3474 ntTSL 512.32□□□□□ -0.442e-8■■□□□ 12.6
DDX55Q8NHQ9 SUN1-206ENST00000413171 4488 ntTSL 512.17□□□□□ -0.462e-8■■□□□ 12.6
DDX55Q8NHQ9 SUN1-212ENST00000429178 3701 ntTSL 1 (best)11.35□□□□□ -0.592e-8■■□□□ 12.6
DDX55Q8NHQ9 SUN1-202ENST00000389574 3812 ntAPPRIS P3 TSL 2 BASIC10.85□□□□□ -0.672e-8■■□□□ 12.6
DDX55Q8NHQ9 SUN1-210ENST00000425407 3868 ntAPPRIS P3 TSL 5 BASIC10.32□□□□□ -0.762e-8■■□□□ 12.6
DDX55Q8NHQ9 SUN1-219ENST00000452783 3717 ntTSL 2 BASIC10.03□□□□□ -0.82e-8■■□□□ 12.6
DDX55Q8NHQ9 SUN1-205ENST00000405266 4062 ntTSL 5 BASIC10.02□□□□□ -0.812e-8■■□□□ 12.6
DDX55Q8NHQ9 SUN1-203ENST00000401592 3953 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.812e-8■■□□□ 12.6
DDX55Q8NHQ9 SUN1-229ENST00000475971 4038 ntTSL 1 (best)9.91□□□□□ -0.822e-8■■□□□ 12.6
DDX55Q8NHQ9 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.922e-8■■□□□ 12.6
DDX55Q8NHQ9 MLF2-204ENST00000536249 570 ntTSL 28.74□□□□□ -1.012e-8■■□□□ 12.6
DDX55Q8NHQ9 GART-206ENST00000424203 3571 ntTSL 1 (best)8.63□□□□□ -1.032e-7■■□□□ 12.6
DDX55Q8NHQ9 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC8.01□□□□□ -1.132e-8■■□□□ 12.6
DDX55Q8NHQ9 MAP4-203ENST00000383736 2282 ntTSL 57.65□□□□□ -1.186e-13■■□□□ 12.6
DDX55Q8NHQ9 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.212e-7■■□□□ 12.6
DDX55Q8NHQ9 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.372e-7■■□□□ 12.6
DDX55Q8NHQ9 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.54□□□□□ -1.522e-8■■□□□ 12.6
DDX55Q8NHQ9 NUP155-206ENST00000508182 702 ntTSL 24.98□□□□□ -1.612e-8■■□□□ 12.6
DDX55Q8NHQ9 NUP155-203ENST00000502533 1896 ntTSL 53.23□□□□□ -1.892e-8■■□□□ 12.6
DDX55Q8NHQ9 CERS2-202ENST00000345896 2170 ntTSL 231.56■■■□□ 2.647e-9■■□□□ 12.6
DDX55Q8NHQ9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.277e-9■■□□□ 12.6
DDX55Q8NHQ9 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.117e-9■■□□□ 12.6
DDX55Q8NHQ9 CERS2-209ENST00000482825 1618 ntTSL 515.79■□□□□ 0.127e-9■■□□□ 12.6
DDX55Q8NHQ9 CERS2-214ENST00000561294 1803 ntTSL 5 BASIC13.87□□□□□ -0.197e-9■■□□□ 12.6
DDX55Q8NHQ9 CERS2-213ENST00000560793 1661 ntTSL 1 (best)13.72□□□□□ -0.217e-9■■□□□ 12.6
DDX55Q8NHQ9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.351e-7■■□□□ 12.6
DDX55Q8NHQ9 NEK6-213ENST00000540326 2578 ntTSL 1 (best) BASIC12.92□□□□□ -0.341e-7■■□□□ 12.6
DDX55Q8NHQ9 NEK6-205ENST00000394199 2535 ntTSL 2 BASIC12.6□□□□□ -0.391e-7■■□□□ 12.6
DDX55Q8NHQ9 NEK6-212ENST00000539416 2582 ntTSL 2 BASIC12.59□□□□□ -0.391e-7■■□□□ 12.6
DDX55Q8NHQ9 NEK6-203ENST00000373600 3619 ntTSL 1 (best) BASIC12.22□□□□□ -0.451e-7■■□□□ 12.6
DDX55Q8NHQ9 NEK6-201ENST00000320246 3447 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.531e-7■■□□□ 12.6
DDX55Q8NHQ9 NEK6-215ENST00000546191 2580 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.751e-7■■□□□ 12.6
DDX55Q8NHQ9 NEK6-204ENST00000373603 3447 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.891e-7■■□□□ 12.6
DDX55Q8NHQ9 FGFR1-228ENST00000526688 570 ntTSL 316.97■□□□□ 0.318e-9■■□□□ 12.6
DDX55Q8NHQ9 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.47■□□□□ 0.078e-9■■□□□ 12.6
DDX55Q8NHQ9 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.27■□□□□ 0.038e-9■■□□□ 12.6
DDX55Q8NHQ9 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.14■□□□□ 0.018e-9■■□□□ 12.6
DDX55Q8NHQ9 FGFR1-227ENST00000526570 5528 ntTSL 1 (best)14.09□□□□□ -0.158e-9■■□□□ 12.6
DDX55Q8NHQ9 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC13.62□□□□□ -0.238e-9■■□□□ 12.6
DDX55Q8NHQ9 FGFR1-209ENST00000397113 3680 ntAPPRIS ALT1 TSL 2 BASIC10.7□□□□□ -0.78e-9■■□□□ 12.6
DDX55Q8NHQ9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC24.78■■□□□ 1.565e-9■■□□□ 12.6
DDX55Q8NHQ9 TMEM256-PLSCR3-202ENST00000570600 1526 ntAPPRIS ALT2 TSL 223.58■■□□□ 1.365e-9■■□□□ 12.6
DDX55Q8NHQ9 TMEM256-PLSCR3-201ENST00000570569 562 ntAPPRIS P5 TSL 320.91■□□□□ 0.945e-9■■□□□ 12.6
DDX55Q8NHQ9 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.455e-9■■□□□ 12.6
DDX55Q8NHQ9 TMEM256-203ENST00000576017 511 ntTSL 310.5□□□□□ -0.735e-9■■□□□ 12.6
DDX55Q8NHQ9 AC005726.2-201ENST00000481916 2091 ntTSL 1 (best)23.2■■□□□ 1.31e-6■■□□□ 12.6
DDX55Q8NHQ9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.213e-7■■□□□ 12.6
DDX55Q8NHQ9 IRX3-202ENST00000558054 444 ntTSL 211.78□□□□□ -0.523e-7■■□□□ 12.6
DDX55Q8NHQ9 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.146e-12■■□□□ 12.6
DDX55Q8NHQ9 MYL4-208ENST00000572316 850 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.056e-12■■□□□ 12.6
DDX55Q8NHQ9 MYL4-201ENST00000354968 907 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.326e-12■■□□□ 12.6
DDX55Q8NHQ9 MYL4-206ENST00000571981 920 ntTSL 313.03□□□□□ -0.326e-12■■□□□ 12.6
DDX55Q8NHQ9 CCDC58-205ENST00000479899 545 ntTSL 3 BASIC13.57□□□□□ -0.248e-9■■□□□ 12.6
DDX55Q8NHQ9 CCDC58-206ENST00000497726 438 ntTSL 5 BASIC12.09□□□□□ -0.478e-9■■□□□ 12.6
DDX55Q8NHQ9 CCDC58-201ENST00000291458 720 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.498e-9■■□□□ 12.6
DDX55Q8NHQ9 CCDC58-202ENST00000460810 573 ntTSL 24.64□□□□□ -1.678e-9■■□□□ 12.6
DDX55Q8NHQ9 CCDC58-203ENST00000466854 769 ntTSL 34.64□□□□□ -1.678e-9■■□□□ 12.6
DDX55Q8NHQ9 CPED1-209ENST00000520801 553 ntTSL 414.06□□□□□ -0.164e-14■■□□□ 12.6
DDX55Q8NHQ9 CPED1-204ENST00000428526 2219 ntTSL 29.12□□□□□ -0.954e-14■■□□□ 12.6
DDX55Q8NHQ9 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.264e-14■■□□□ 12.6
DDX55Q8NHQ9 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC7.11□□□□□ -1.274e-14■■□□□ 12.6
DDX55Q8NHQ9 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.59□□□□□ -1.354e-14■■□□□ 12.6
DDX55Q8NHQ9 CPED1-205ENST00000443817 1118 ntTSL 1 (best)4.96□□□□□ -1.624e-14■■□□□ 12.6
DDX55Q8NHQ9 SEMA4G-203ENST00000476171 393 ntTSL 313.99□□□□□ -0.172e-11■■□□□ 12.6
DDX55Q8NHQ9 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.91■■□□□ 1.92e-6■■□□□ 12.6
DDX55Q8NHQ9 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC15.19■□□□□ 0.022e-6■■□□□ 12.6
DDX55Q8NHQ9 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.93■□□□□ 0.35e-7■■□□□ 12.6
DDX55Q8NHQ9 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC17.29■□□□□ 0.361e-6■■□□□ 12.6
DDX55Q8NHQ9 ADH5-210ENST00000512621 1475 ntTSL 214.7□□□□□ -0.061e-6■■□□□ 12.6
DDX55Q8NHQ9 ADH5-201ENST00000296412 2615 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.781e-6■■□□□ 12.6
DDX55Q8NHQ9 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC33.95■■■■□ 3.031e-6■■□□□ 12.6
DDX55Q8NHQ9 ZFAND2B-219ENST00000486734 889 ntTSL 321.79■■□□□ 1.081e-6■■□□□ 12.6
DDX55Q8NHQ9 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC19.23■□□□□ 0.671e-6■■□□□ 12.6
DDX55Q8NHQ9 ZFAND2B-213ENST00000448496 1064 ntTSL 317.24■□□□□ 0.351e-6■■□□□ 12.6
DDX55Q8NHQ9 ZFAND2B-209ENST00000422255 705 ntTSL 314.89□□□□□ -0.031e-6■■□□□ 12.6
DDX55Q8NHQ9 ZFAND2B-216ENST00000469596 532 ntTSL 511.52□□□□□ -0.571e-6■■□□□ 12.6
DDX55Q8NHQ9 ACTN4-208ENST00000497637 877 ntTSL 223.41■■□□□ 1.349e-29■■□□□ 12.6
DDX55Q8NHQ9 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.52e-7■■□□□ 12.6
DDX55Q8NHQ9 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.242e-7■■□□□ 12.6
DDX55Q8NHQ9 AK4-201ENST00000327299 6836 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.372e-7■■□□□ 12.6
DDX55Q8NHQ9 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC14.01□□□□□ -0.171e-34■■□□□ 12.6
DDX55Q8NHQ9 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.411e-34■■□□□ 12.6
DDX55Q8NHQ9 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.461e-34■■□□□ 12.6
DDX55Q8NHQ9 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.561e-34■■□□□ 12.6
DDX55Q8NHQ9 DDX39B-217ENST00000474961 974 ntTSL 211.14□□□□□ -0.631e-34■■□□□ 12.6
DDX55Q8NHQ9 DDX39B-216ENST00000462421 618 ntTSL 310.85□□□□□ -0.671e-34■■□□□ 12.6
DDX55Q8NHQ9 DDX39B-221ENST00000484566 857 ntTSL 510.84□□□□□ -0.671e-34■■□□□ 12.6
DDX55Q8NHQ9 DDX39B-215ENST00000462256 4027 ntTSL 210.54□□□□□ -0.721e-34■■□□□ 12.6
DDX55Q8NHQ9 MYL4-203ENST00000536623 650 ntTSL 511.84□□□□□ -0.517e-12■■□□□ 12.5
Retrieved 100 of 15,504 protein–RNA pairs in 131.4 ms