RNA–Protein interactions for RNA: ENST00000466854.5

CCDC58-203, Transcript of coiled-coil domain containing 58, humanhuman

TSL 3

Gene CCDC58, Length 769 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58-203ENST00000466854 AEBP2Q6ZN18 517 aaPredicted RBP24.04■■□□□ 1.44
CCDC58-203ENST00000466854 CHIC1Q5VXU3 224 aa22.97■■□□□ 1.27
CCDC58-203ENST00000466854 POTEDQ86YR6 584 aa20.55■□□□□ 0.88
CCDC58-203ENST00000466854 SENP3Q9H4L4 574 aaPredicted RBP20.4■□□□□ 0.86
CCDC58-203ENST00000466854 PHF23Q9BUL5 403 aaPredicted RBP20.18■□□□□ 0.82
CCDC58-203ENST00000466854 FOXD1Q16676 465 aa19.04■□□□□ 0.64
CCDC58-203ENST00000466854 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
CCDC58-203ENST00000466854 MSH5O43196 834 aa18.06■□□□□ 0.48
CCDC58-203ENST00000466854 PPP6R1Q9UPN7 881 aa17.97■□□□□ 0.47
CCDC58-203ENST00000466854 ADRA2BP18089 450 aa17.89■□□□□ 0.45
CCDC58-203ENST00000466854 PIAS4Q8N2W9 510 aaPredicted RBP17.8■□□□□ 0.44
CCDC58-203ENST00000466854 CACNB1Q02641 598 aaPredicted RBP16.55■□□□□ 0.24
CCDC58-203ENST00000466854 MAPK8IP2Q13387 824 aaPredicted RBP16.39■□□□□ 0.21
CCDC58-203ENST00000466854 SCAF1Q9H7N4 1312 aaKnown RBP16.28■□□□□ 0.2
CCDC58-203ENST00000466854 DMRT2Q9Y5R5 561 aa16.23■□□□□ 0.19
CCDC58-203ENST00000466854 PPP4R3CPQ6ZMV5 832 aa16.17■□□□□ 0.18
CCDC58-203ENST00000466854 POTEHQ6S545 545 aa15.81■□□□□ 0.12
CCDC58-203ENST00000466854 CNKSR2Q8WXI2 1034 aa15.8■□□□□ 0.12
CCDC58-203ENST00000466854 HOXD11P31277 338 aaPredicted RBP15.71■□□□□ 0.11
CCDC58-203ENST00000466854 RNF216Q9NWF9 866 aaPredicted RBP15.62■□□□□ 0.09
CCDC58-203ENST00000466854 NCBP3Q53F19 620 aaKnown RBP15.54■□□□□ 0.08
CCDC58-203ENST00000466854 DCAF8L1A6NGE4 600 aa15.5■□□□□ 0.07
CCDC58-203ENST00000466854 NPM3O75607 178 aaKnown RBP15.4■□□□□ 0.06
CCDC58-203ENST00000466854 KCNA4P22459 653 aa15.28■□□□□ 0.04
CCDC58-203ENST00000466854 RNF39Q9H2S5 420 aa15.15■□□□□ 0.02
CCDC58-203ENST00000466854 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
CCDC58-203ENST00000466854 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.92□□□□□ -0.02
CCDC58-203ENST00000466854 C1QBPQ07021 282 aaKnown RBP14.9□□□□□ -0.02
CCDC58-203ENST00000466854 SLC4A2P04920 1241 aa14.69□□□□□ -0.06
CCDC58-203ENST00000466854 U3KPZ7 1027 aaPredicted RBP14.69□□□□□ -0.06
CCDC58-203ENST00000466854 SLC4A1APQ9BWU0 796 aaKnown RBP14.42□□□□□ -0.1
CCDC58-203ENST00000466854 SPINK5Q9NQ38 1064 aaPredicted RBP14.42□□□□□ -0.1
CCDC58-203ENST00000466854 CAPN15O75808 1086 aa14.33□□□□□ -0.12
CCDC58-203ENST00000466854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.25□□□□□ -0.13
CCDC58-203ENST00000466854 DSG3P32926 999 aa14.25□□□□□ -0.13
CCDC58-203ENST00000466854 HNRNPUL2Q1KMD3 747 aaKnown RBP14.25□□□□□ -0.13
CCDC58-203ENST00000466854 MYCNP04198 464 aaPredicted RBP14.21□□□□□ -0.13
CCDC58-203ENST00000466854 SAMD1Q6SPF0 538 aaPredicted RBP14.2□□□□□ -0.14
CCDC58-203ENST00000466854 APLP2Q06481 763 aa14.19□□□□□ -0.14
CCDC58-203ENST00000466854 FOXD4L1Q9NU39 408 aa14.17□□□□□ -0.14
CCDC58-203ENST00000466854 TRHP20396 242 aaPredicted RBP14.15□□□□□ -0.14
CCDC58-203ENST00000466854 ZNF219Q9P2Y4 722 aaPredicted RBP14.12□□□□□ -0.15
CCDC58-203ENST00000466854 ZBTB22O15209 634 aa14.09□□□□□ -0.15
CCDC58-203ENST00000466854 ABCB7O75027 752 aa14.05□□□□□ -0.16
CCDC58-203ENST00000466854 SP7Q8TDD2 431 aaPredicted RBP13.98□□□□□ -0.17
CCDC58-203ENST00000466854 ATF5Q9Y2D1 282 aaPredicted RBP13.93□□□□□ -0.18
CCDC58-203ENST00000466854 POLA2Q14181 598 aa13.83□□□□□ -0.2
CCDC58-203ENST00000466854 PLSCR2Q9NRY7 297 aa13.83□□□□□ -0.2
CCDC58-203ENST00000466854 ATXN8OSP0DMR3 200 aa13.7□□□□□ -0.22
CCDC58-203ENST00000466854 CSRNP3Q8WYN3 585 aa13.58□□□□□ -0.24
CCDC58-203ENST00000466854 RBM42Q9BTD8 480 aaKnown RBP13.53□□□□□ -0.24
CCDC58-203ENST00000466854 ZBTB12Q9Y330 459 aaPredicted RBP13.52□□□□□ -0.25
CCDC58-203ENST00000466854 EHMT2Q96KQ7 1210 aa13.47□□□□□ -0.25
CCDC58-203ENST00000466854 CHRDL2Q6WN34 429 aa13.44□□□□□ -0.26
CCDC58-203ENST00000466854 OSCARQ8IYS5 282 aa13.41□□□□□ -0.26
CCDC58-203ENST00000466854 MKRN4PQ13434 485 aaPredicted RBP13.3□□□□□ -0.28
CCDC58-203ENST00000466854 AKT1S1Q96B36 256 aa13.28□□□□□ -0.28
CCDC58-203ENST00000466854 FBLN2P98095 1184 aa13.27□□□□□ -0.29
CCDC58-203ENST00000466854 REM2Q8IYK8 340 aaPredicted RBP13.18□□□□□ -0.3
CCDC58-203ENST00000466854 SPDYE2BA6NHP3 402 aa13.15□□□□□ -0.3
CCDC58-203ENST00000466854 SPDYE6P0CI01 402 aa13.15□□□□□ -0.3
CCDC58-203ENST00000466854 SPDYE2Q495Y8 402 aa13.15□□□□□ -0.3
CCDC58-203ENST00000466854 LHX8Q68G74 356 aa13.08□□□□□ -0.32
CCDC58-203ENST00000466854 PITPNM1O00562 1244 aa13.05□□□□□ -0.32
CCDC58-203ENST00000466854 SSUH2Q9Y2M2 353 aa13.04□□□□□ -0.32
CCDC58-203ENST00000466854 HAX1O00165 279 aa13.01□□□□□ -0.33
CCDC58-203ENST00000466854 ZNF692Q9BU19 519 aaPredicted RBP13.01□□□□□ -0.33
CCDC58-203ENST00000466854 PIP4P2Q8N4L2 257 aa12.94□□□□□ -0.34
CCDC58-203ENST00000466854 FXR2P51116 673 aaKnown RBP eCLIP12.9□□□□□ -0.34
CCDC58-203ENST00000466854 SPDYE1Q8NFV5 336 aaPredicted RBP12.86□□□□□ -0.35
CCDC58-203ENST00000466854 PABPN1Q86U42 306 aaKnown RBP eCLIP12.85□□□□□ -0.35
CCDC58-203ENST00000466854 CLEC11AQ9Y240 323 aa12.83□□□□□ -0.36
CCDC58-203ENST00000466854 SPDYE4A6NLX3 237 aa12.7□□□□□ -0.38
CCDC58-203ENST00000466854 PRKAR2AP13861 404 aaKnown RBP12.69□□□□□ -0.38
CCDC58-203ENST00000466854 PRR29P0C7W0 189 aa12.64□□□□□ -0.39
CCDC58-203ENST00000466854 CHADLQ6NUI6 762 aa12.61□□□□□ -0.39
CCDC58-203ENST00000466854 EVX2Q03828 476 aa12.55□□□□□ -0.4
CCDC58-203ENST00000466854 PCDH10Q9P2E7 1040 aa12.51□□□□□ -0.41
CCDC58-203ENST00000466854 PROM2Q8N271 834 aa12.49□□□□□ -0.41
CCDC58-203ENST00000466854 STAG3Q9UJ98 1225 aa12.49□□□□□ -0.41
CCDC58-203ENST00000466854 C19orf67A6NJJ6 358 aa12.47□□□□□ -0.41
CCDC58-203ENST00000466854 CREBZFQ9NS37 354 aa12.43□□□□□ -0.42
CCDC58-203ENST00000466854 POTEMA6NI47 508 aa12.42□□□□□ -0.42
CCDC58-203ENST00000466854 FARP1Q9Y4F1 1045 aaPredicted RBP12.42□□□□□ -0.42
CCDC58-203ENST00000466854 CD44P16070 742 aaKnown RBP12.3□□□□□ -0.44
CCDC58-203ENST00000466854 POTEGQ6S5H5 508 aa12.3□□□□□ -0.44
CCDC58-203ENST00000466854 FKBP8Q14318 412 aa12.27□□□□□ -0.45
CCDC58-203ENST00000466854 MNX1P50219 401 aaPredicted RBP12.26□□□□□ -0.45
CCDC58-203ENST00000466854 GABBR2O75899 941 aa12.25□□□□□ -0.45
CCDC58-203ENST00000466854 ZRANB1Q9UGI0 708 aa12.15□□□□□ -0.46
CCDC58-203ENST00000466854 ZNF579Q8NAF0 562 aaKnown RBP12.14□□□□□ -0.47
CCDC58-203ENST00000466854 NPM1P06748 294 aaKnown RBP eCLIP12.13□□□□□ -0.47
CCDC58-203ENST00000466854 MIER1Q8N108 512 aa12.07□□□□□ -0.48
CCDC58-203ENST00000466854 PAK3O75914 559 aaPredicted RBP12.04□□□□□ -0.48
CCDC58-203ENST00000466854 CLCN6P51797 869 aa12.04□□□□□ -0.48
CCDC58-203ENST00000466854 PHF12Q96QT6 1004 aa12.03□□□□□ -0.48
CCDC58-203ENST00000466854 POTEIP0CG38 1075 aa12.02□□□□□ -0.49
CCDC58-203ENST00000466854 GALR2O43603 387 aaPredicted RBP11.99□□□□□ -0.49
CCDC58-203ENST00000466854 PLEKHG5O94827 1062 aa11.99□□□□□ -0.49
CCDC58-203ENST00000466854 PLCD3Q8N3E9 789 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms