Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.991e-70■■■□□ 15.1
YBX3P16989 TOMM40-205ENST00000589649 731 ntTSL 233.1■■■□□ 2.899e-10■■■□□ 15.1
YBX3P16989 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.659e-10■■■□□ 15.1
YBX3P16989 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.659e-10■■■□□ 15.1
YBX3P16989 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC29.22■■■□□ 2.279e-10■■■□□ 15.1
YBX3P16989 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.379e-10■■■□□ 15.1
YBX3P16989 SURF4-201ENST00000371982 553 ntTSL 320.65■□□□□ 0.91e-6■■■□□ 15.1
YBX3P16989 SURF4-203ENST00000371991 715 ntTSL 3 BASIC18.3■□□□□ 0.521e-6■■■□□ 15.1
YBX3P16989 SURF4-205ENST00000467910 693 ntTSL 517.44■□□□□ 0.381e-6■■■□□ 15.1
YBX3P16989 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.967e-47■■■□□ 15.1
YBX3P16989 BRD2-219ENST00000607833 2338 ntAPPRIS ALT2 TSL 1 (best)13.68□□□□□ -0.225e-10■■■□□ 15.1
YBX3P16989 RTFDC1-204ENST00000449062 852 ntTSL 518.59■□□□□ 0.571e-6■■■□□ 15.1
YBX3P16989 ACTN4-204ENST00000440400 3180 ntTSL 514.58□□□□□ -0.087e-9■■■□□ 15.1
YBX3P16989 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.747e-7■■■□□ 15.1
YBX3P16989 NOL7-203ENST00000474485 920 ntTSL 313.26□□□□□ -0.297e-7■■■□□ 15.1
YBX3P16989 PSMD4-207ENST00000461434 801 ntTSL 214.55□□□□□ -0.082e-11■■■□□ 15.1
YBX3P16989 ARL10-204ENST00000514533 258 ntTSL 319.93■□□□□ 0.789e-12■■■□□ 15.1
YBX3P16989 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.349e-12■■■□□ 15.1
YBX3P16989 SRM-205ENST00000487300 611 ntTSL 230.07■■■□□ 2.45e-16■■■□□ 15.1
YBX3P16989 POLD2-216ENST00000489883 528 ntTSL 224.9■■□□□ 1.585e-8■■■□□ 15.1
YBX3P16989 AMFR-208ENST00000566757 1844 nt18.72■□□□□ 0.592e-10■■■□□ 15.1
YBX3P16989 AMFR-210ENST00000568325 1230 ntTSL 216.87■□□□□ 0.292e-10■■■□□ 15.1
YBX3P16989 ABCF3-217ENST00000489719 569 ntTSL 423.53■■□□□ 1.369e-8■■■□□ 15.1
YBX3P16989 ABCF3-207ENST00000468892 1360 ntTSL 321.51■■□□□ 1.039e-8■■■□□ 15.1
YBX3P16989 ABCF3-209ENST00000472608 657 ntTSL 219.96■□□□□ 0.799e-8■■■□□ 15.1
YBX3P16989 ABCF3-208ENST00000471226 650 ntTSL 519.6■□□□□ 0.739e-8■■■□□ 15.1
YBX3P16989 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.79e-8■■■□□ 15.1
YBX3P16989 ABCF3-211ENST00000475728 503 ntTSL 318.57■□□□□ 0.569e-8■■■□□ 15.1
YBX3P16989 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.19e-8■■■□□ 15.1
YBX3P16989 ABCF3-210ENST00000473311 2844 ntTSL 514.13□□□□□ -0.159e-8■■■□□ 15.1
YBX3P16989 MAP1B-206ENST00000513526 2154 ntTSL 217.15■□□□□ 0.342e-6■■■□□ 15.1
YBX3P16989 MAP1B-204ENST00000511641 2056 ntTSL 1 (best)17.11■□□□□ 0.332e-6■■■□□ 15.1
YBX3P16989 RRM1-204ENST00000526865 562 ntTSL 46.24□□□□□ -1.412e-8■■■□□ 15.1
YBX3P16989 ABCF2-206ENST00000477252 249 ntTSL 323.11■■□□□ 1.291e-12■■■□□ 15.1
YBX3P16989 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.191e-6■■■□□ 15.1
YBX3P16989 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.21e-6■■■□□ 15.1
YBX3P16989 ABCA2-202ENST00000341511 8063 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.381e-6■■■□□ 15.1
YBX3P16989 ABCA2-218ENST00000487109 8031 ntTSL 1 (best)12.42□□□□□ -0.421e-6■■■□□ 15.1
YBX3P16989 ABCA2-223ENST00000614293 8146 ntTSL 5 BASIC12.26□□□□□ -0.451e-6■■■□□ 15.1
YBX3P16989 ABCA2-208ENST00000459850 8073 ntTSL 1 (best)12.11□□□□□ -0.471e-6■■■□□ 15.1
YBX3P16989 CAPZB-206ENST00000457768 432 ntTSL 316.82■□□□□ 0.286e-11■■■□□ 15.1
YBX3P16989 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.181e-6■■■□□ 15.1
YBX3P16989 TRAPPC1-207ENST00000575639 561 ntTSL 219.15■□□□□ 0.661e-6■■■□□ 15.1
YBX3P16989 TRAPPC1-202ENST00000540486 759 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.331e-6■■■□□ 15.1
YBX3P16989 TRAPPC1-203ENST00000571739 648 ntTSL 311.2□□□□□ -0.621e-6■■■□□ 15.1
YBX3P16989 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC27.63■■■□□ 2.012e-7■■■□□ 15
YBX3P16989 KIAA0100-215ENST00000583403 1271 ntTSL 1 (best)29.13■■■□□ 2.255e-7■■■□□ 15
YBX3P16989 KIAA0100-205ENST00000577417 1839 ntTSL 1 (best)23.84■■□□□ 1.415e-7■■■□□ 15
YBX3P16989 KIAA0100-210ENST00000580882 1582 ntTSL 1 (best)17.91■□□□□ 0.465e-7■■■□□ 15
YBX3P16989 KIAA0100-214ENST00000582901 509 ntTSL 39.87□□□□□ -0.835e-7■■■□□ 15
YBX3P16989 EIF3G-208ENST00000589454 873 ntTSL 515.05■□□□□ -02e-9■■■□□ 15
YBX3P16989 EPB41L1-206ENST00000373950 3631 ntTSL 5 BASIC12.88□□□□□ -0.351e-6■■■□□ 15
YBX3P16989 EPB41L1-203ENST00000373941 2652 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.471e-6■■■□□ 15
YBX3P16989 EPB41L1-218ENST00000628415 3287 ntTSL 2 BASIC11.8□□□□□ -0.521e-6■■■□□ 15
YBX3P16989 EPB41L1-201ENST00000202028 3514 ntTSL 1 (best) BASIC9.02□□□□□ -0.971e-6■■■□□ 15
YBX3P16989 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.39■■□□□ 1.021e-6■■■□□ 15
YBX3P16989 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.24■□□□□ 0.671e-6■■■□□ 15
YBX3P16989 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.181e-6■■■□□ 15
YBX3P16989 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.122e-6■■■□□ 15
YBX3P16989 ACSM3-206ENST00000561795 580 ntTSL 46.21□□□□□ -1.422e-12■■■□□ 15
YBX3P16989 PRKCSH-207ENST00000588269 557 ntTSL 515.75■□□□□ 0.116e-19■■■□□ 15
YBX3P16989 PRKCSH-214ENST00000591946 569 ntTSL 24.86□□□□□ -1.636e-19■■■□□ 15
YBX3P16989 EPB41L1-219ENST00000636016 6665 ntTSL 29.93□□□□□ -0.825e-6■■■□□ 15
YBX3P16989 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.372e-7■■■□□ 15
YBX3P16989 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.75■□□□□ 0.592e-7■■■□□ 15
YBX3P16989 ABHD14A-ACY1-219ENST00000636942 1696 ntTSL 526.39■■□□□ 1.821e-6■■■□□ 15
YBX3P16989 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC25.14■■□□□ 1.621e-6■■■□□ 15
YBX3P16989 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.591e-6■■■□□ 15
YBX3P16989 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC24.86■■□□□ 1.571e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-215ENST00000636646 2151 ntTSL 524.18■■□□□ 1.461e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-201ENST00000463721 1836 ntTSL 224.07■■□□□ 1.441e-6■■■□□ 15
YBX3P16989 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC24■■□□□ 1.431e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-212ENST00000636089 2230 ntTSL 523.47■■□□□ 1.351e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.331e-6■■■□□ 15
YBX3P16989 ACY1-221ENST00000637199 790 ntTSL 222.51■■□□□ 1.191e-6■■■□□ 15
YBX3P16989 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.151e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-208ENST00000635951 2168 ntTSL 521.74■■□□□ 1.071e-6■■■□□ 15
YBX3P16989 ACY1-209ENST00000491318 1390 ntTSL 321.45■■□□□ 1.021e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-226ENST00000637696 2373 ntTSL 521.33■■□□□ 11e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-229ENST00000637978 1758 ntAPPRIS P5 TSL 521.25■□□□□ 0.991e-6■■■□□ 15
YBX3P16989 ACY1-217ENST00000636880 1457 ntTSL 320.55■□□□□ 0.881e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-217ENST00000636718 2499 ntTSL 520.54■□□□□ 0.881e-6■■■□□ 15
YBX3P16989 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.34■□□□□ 0.851e-6■■■□□ 15
YBX3P16989 ACY1-229ENST00000638136 1857 ntTSL 519.78■□□□□ 0.761e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-224ENST00000637512 1536 ntTSL 519.56■□□□□ 0.721e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-207ENST00000635946 2459 ntTSL 519.54■□□□□ 0.721e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-225ENST00000637563 2622 ntTSL 519.24■□□□□ 0.671e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-216ENST00000636660 1126 ntTSL 518.53■□□□□ 0.561e-6■■■□□ 15
YBX3P16989 ACY1-213ENST00000635941 1691 ntTSL 518.31■□□□□ 0.521e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-218ENST00000636826 2940 ntTSL 517.88■□□□□ 0.451e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-220ENST00000637025 2926 ntTSL 517.6■□□□□ 0.411e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-206ENST00000635937 3078 ntTSL 516.93■□□□□ 0.31e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-221ENST00000637130 3158 ntTSL 516.35■□□□□ 0.211e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-214ENST00000636490 3067 ntTSL 515.33■□□□□ 0.041e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-227ENST00000637730 2735 ntTSL 515.04■□□□□ -01e-6■■■□□ 15
YBX3P16989 ABHD14A-ACY1-228ENST00000637778 3628 ntTSL 514.47□□□□□ -0.091e-6■■■□□ 15
YBX3P16989 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.221e-7■■■□□ 15
YBX3P16989 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC12.66□□□□□ -0.381e-7■■■□□ 15
YBX3P16989 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.551e-7■■■□□ 15
YBX3P16989 HDLBP-201ENST00000310931 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.791e-7■■■□□ 15
Retrieved 100 of 29,075 protein–RNA pairs in 647.7 ms