RNA–Protein interactions for RNA: ENST00000292808.5

ABCF3-201, Transcript of ATP binding cassette subfamily F member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene ABCF3, Length 2,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-201ENST00000292808 NISCHQ9Y2I1 1504 aa31.36■■■□□ 2.61
ABCF3-201ENST00000292808 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
ABCF3-201ENST00000292808 ZCCHC6Q5VYS8 1495 aaKnown RBP26.42■■□□□ 1.82
ABCF3-201ENST00000292808 DCAF1Q9Y4B6 1507 aa25.89■■□□□ 1.74
ABCF3-201ENST00000292808 SHROOM4Q9ULL8 1493 aa25.81■■□□□ 1.72
ABCF3-201ENST00000292808 DCAF8L2P0C7V8 631 aa25.76■■□□□ 1.71
ABCF3-201ENST00000292808 ABCC9O60706 1549 aa25.55■■□□□ 1.68
ABCF3-201ENST00000292808 MYO15BQ96JP2 1530 aa25.47■■□□□ 1.67
ABCF3-201ENST00000292808 NACADO15069 1562 aa25.25■■□□□ 1.63
ABCF3-201ENST00000292808 SCRIBQ14160 1630 aa25.12■■□□□ 1.61
ABCF3-201ENST00000292808 RB1CC1Q8TDY2 1594 aa24.98■■□□□ 1.59
ABCF3-201ENST00000292808 SUPT5HO00267 1087 aaKnown RBP24.89■■□□□ 1.58
ABCF3-201ENST00000292808 UNC13AQ9UPW8 1703 aa24.63■■□□□ 1.53
ABCF3-201ENST00000292808 RSF1Q96T23 1441 aaPredicted RBP24.45■■□□□ 1.5
ABCF3-201ENST00000292808 CECR2Q9BXF3 1484 aa24.42■■□□□ 1.5
ABCF3-201ENST00000292808 BICRAQ9NZM4 1560 aa24.34■■□□□ 1.49
ABCF3-201ENST00000292808 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
ABCF3-201ENST00000292808 BAZ1AQ9NRL2 1556 aaPredicted RBP24.16■■□□□ 1.46
ABCF3-201ENST00000292808 PABPN1Q86U42 306 aaKnown RBP eCLIP24.15■■□□□ 1.461e-6■■■□□ 18.9
ABCF3-201ENST00000292808 WIZO95785 1651 aa24.12■■□□□ 1.45
ABCF3-201ENST00000292808 SMARCA4P51532 1647 aa24.07■■□□□ 1.44
ABCF3-201ENST00000292808 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
ABCF3-201ENST00000292808 TOP2AP11388 1531 aaKnown RBP23.81■■□□□ 1.4
ABCF3-201ENST00000292808 PEG3Q9GZU2 1588 aa23.75■■□□□ 1.39
ABCF3-201ENST00000292808 SMARCA2P51531 1590 aa23.64■■□□□ 1.38
ABCF3-201ENST00000292808 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
ABCF3-201ENST00000292808 ATAD2BQ9ULI0 1458 aa23.6■■□□□ 1.37
ABCF3-201ENST00000292808 CCDC88BA6NC98 1476 aa23.59■■□□□ 1.37
ABCF3-201ENST00000292808 BAZ1BQ9UIG0 1483 aaKnown RBP23.45■■□□□ 1.34
ABCF3-201ENST00000292808 TRIM41Q8WV44 630 aa23.33■■□□□ 1.33
ABCF3-201ENST00000292808 NCAPD3P42695 1498 aa23.32■■□□□ 1.32
ABCF3-201ENST00000292808 HMGXB3Q12766 1538 aa23.32■■□□□ 1.32
ABCF3-201ENST00000292808 ABCC8Q09428 1581 aa23.23■■□□□ 1.31
ABCF3-201ENST00000292808 CC2D2AQ9P2K1 1620 aa23.14■■□□□ 1.29
ABCF3-201ENST00000292808 LOC105371045A0A1W2PR82 267 aa23.1■■□□□ 1.29
ABCF3-201ENST00000292808 FAM9AQ8IZU1 332 aaPredicted RBP22.99■■□□□ 1.27
ABCF3-201ENST00000292808 WRNQ14191 1432 aaPredicted RBP eCLIP22.96■■□□□ 1.27
ABCF3-201ENST00000292808 SYNJ1O43426 1573 aa22.94■■□□□ 1.26
ABCF3-201ENST00000292808 CFTRP13569 1480 aa22.89■■□□□ 1.26
ABCF3-201ENST00000292808 SOGA1O94964 1423 aa22.82■■□□□ 1.24
ABCF3-201ENST00000292808 PRDM2Q13029 1718 aa22.82■■□□□ 1.24
ABCF3-201ENST00000292808 TOP2BQ02880 1626 aa22.77■■□□□ 1.24
ABCF3-201ENST00000292808 RUSC2Q8N2Y8 1516 aa22.76■■□□□ 1.23
ABCF3-201ENST00000292808 BIVM-ERCC5R4GMW8 1640 aa22.76■■□□□ 1.23
ABCF3-201ENST00000292808 CADPSQ9ULU8 1353 aa22.73■■□□□ 1.23
ABCF3-201ENST00000292808 EEA1Q15075 1411 aa22.69■■□□□ 1.22
ABCF3-201ENST00000292808 CUX1P39880 1505 aa22.69■■□□□ 1.22
ABCF3-201ENST00000292808 EHMT2Q96KQ7 1210 aa22.69■■□□□ 1.22
ABCF3-201ENST00000292808 DNAJC5BQ9UF47 199 aa22.58■■□□□ 1.21
ABCF3-201ENST00000292808 CSRNP3Q8WYN3 585 aa22.58■■□□□ 1.21
ABCF3-201ENST00000292808 NESP48681 1621 aa22.56■■□□□ 1.2
ABCF3-201ENST00000292808 FANCD2Q9BXW9 1451 aa22.51■■□□□ 1.19
ABCF3-201ENST00000292808 PCGF6Q9BYE7 350 aa22.49■■□□□ 1.19
ABCF3-201ENST00000292808 LAMC3Q9Y6N6 1575 aa22.48■■□□□ 1.19
ABCF3-201ENST00000292808 KIF21BO75037 1637 aa22.47■■□□□ 1.19
ABCF3-201ENST00000292808 GOLGA3Q08378 1498 aa22.45■■□□□ 1.18
ABCF3-201ENST00000292808 TNIKQ9UKE5 1360 aa22.42■■□□□ 1.18
ABCF3-201ENST00000292808 CEP164Q9UPV0 1460 aa22.41■■□□□ 1.18
ABCF3-201ENST00000292808 FGD5Q6ZNL6 1462 aa22.38■■□□□ 1.17
ABCF3-201ENST00000292808 DNMBPQ6XZF7 1577 aa22.36■■□□□ 1.17
ABCF3-201ENST00000292808 CEP162Q5TB80 1403 aa22.35■■□□□ 1.17
ABCF3-201ENST00000292808 RAPGEF2Q9Y4G8 1499 aa22.34■■□□□ 1.17
ABCF3-201ENST00000292808 KIF27Q86VH2 1401 aa22.32■■□□□ 1.16
ABCF3-201ENST00000292808 HRCP23327 699 aa22.32■■□□□ 1.16
ABCF3-201ENST00000292808 TOPBP1Q92547 1522 aa22.31■■□□□ 1.16
ABCF3-201ENST00000292808 PRXQ9BXM0 1461 aa22.3■■□□□ 1.16
ABCF3-201ENST00000292808 UBTFP17480 764 aaKnown RBP22.29■■□□□ 1.16
ABCF3-201ENST00000292808 KIF21AQ7Z4S6 1674 aa22.28■■□□□ 1.16
ABCF3-201ENST00000292808 URB2Q14146 1524 aaKnown RBP22.27■■□□□ 1.16
ABCF3-201ENST00000292808 ERICH3Q5RHP9 1530 aa22.25■■□□□ 1.15
ABCF3-201ENST00000292808 PDS5BQ9NTI5 1447 aa22.25■■□□□ 1.15
ABCF3-201ENST00000292808 CUX2O14529 1486 aa22.25■■□□□ 1.15
ABCF3-201ENST00000292808 POLA1P09884 1462 aaPredicted RBP22.23■■□□□ 1.15
ABCF3-201ENST00000292808 TRIM26Q12899 539 aaPredicted RBP22.2■■□□□ 1.14
ABCF3-201ENST00000292808 RAD54L2Q9Y4B4 1467 aa22.19■■□□□ 1.14
ABCF3-201ENST00000292808 ABCA10Q8WWZ4 1543 aa22.16■■□□□ 1.14
ABCF3-201ENST00000292808 IGF1RP08069 1367 aa22.15■■□□□ 1.14
ABCF3-201ENST00000292808 WDR97A6NE52 1622 aa22.13■■□□□ 1.13
ABCF3-201ENST00000292808 CLIP1P30622 1438 aa22.1■■□□□ 1.13
ABCF3-201ENST00000292808 PPARGC1BQ86YN6 1023 aaKnown RBP22.02■■□□□ 1.12
ABCF3-201ENST00000292808 MRC2Q9UBG0 1479 aa22.01■■□□□ 1.11
ABCF3-201ENST00000292808 CARMIL1Q5VZK9 1371 aa22.01■■□□□ 1.11
ABCF3-201ENST00000292808 ABCA5Q8WWZ7 1642 aa22■■□□□ 1.11
ABCF3-201ENST00000292808 TARBP1Q13395 1621 aaKnown RBP22■■□□□ 1.11
ABCF3-201ENST00000292808 VPS8Q8N3P4 1428 aa21.95■■□□□ 1.1
ABCF3-201ENST00000292808 CUL7Q14999 1698 aa21.93■■□□□ 1.1
ABCF3-201ENST00000292808 ARAP1Q96P48 1450 aa21.93■■□□□ 1.1
ABCF3-201ENST00000292808 RANGAP1P46060 587 aaPredicted RBP21.92■■□□□ 1.1
ABCF3-201ENST00000292808 TDRD9Q8NDG6 1382 aaKnown RBP21.92■■□□□ 1.1
ABCF3-201ENST00000292808 WDR62O43379 1518 aa21.91■■□□□ 1.1
ABCF3-201ENST00000292808 GAPVD1Q14C86 1478 aa21.89■■□□□ 1.09
ABCF3-201ENST00000292808 ARHGAP35Q9NRY4 1499 aa21.86■■□□□ 1.09
ABCF3-201ENST00000292808 THOC2Q8NI27 1593 aaKnown RBP21.84■■□□□ 1.09
ABCF3-201ENST00000292808 ERCC6Q03468 1493 aa21.8■■□□□ 1.08
ABCF3-201ENST00000292808 PBRM1Q86U86 1689 aa21.8■■□□□ 1.08
ABCF3-201ENST00000292808 TTBK1Q5TCY1 1321 aaPredicted RBP21.77■■□□□ 1.08
ABCF3-201ENST00000292808 CTTNBP2Q8WZ74 1663 aa21.77■■□□□ 1.08
ABCF3-201ENST00000292808 IFT140Q96RY7 1462 aa21.76■■□□□ 1.07
ABCF3-201ENST00000292808 AQRO60306 1485 aaKnown RBP eCLIP21.75■■□□□ 1.077e-7■■■■■ 27.7
ABCF3-201ENST00000292808 ZNF608Q9ULD9 1512 aaPredicted RBP21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms