RNA–Protein interactions for RNA: ENST00000471226.5

ABCF3-208, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 5

Gene ABCF3, Length 650 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-208ENST00000471226 NISCHQ9Y2I1 1504 aa36.96■■■■□ 3.51
ABCF3-208ENST00000471226 CCDC180Q9P1Z9 1646 aa32.89■■■□□ 2.86
ABCF3-208ENST00000471226 ABCC9O60706 1549 aa32.09■■■□□ 2.73
ABCF3-208ENST00000471226 RB1CC1Q8TDY2 1594 aa30.91■■■□□ 2.54
ABCF3-208ENST00000471226 NACADO15069 1562 aa30.89■■■□□ 2.54
ABCF3-208ENST00000471226 ZCCHC6Q5VYS8 1495 aaKnown RBP30.79■■■□□ 2.52
ABCF3-208ENST00000471226 DCAF8L2P0C7V8 631 aa30.78■■■□□ 2.52
ABCF3-208ENST00000471226 MYO15BQ96JP2 1530 aa30.73■■■□□ 2.51
ABCF3-208ENST00000471226 DCAF1Q9Y4B6 1507 aa30.61■■■□□ 2.49
ABCF3-208ENST00000471226 UNC13AQ9UPW8 1703 aa30.3■■■□□ 2.44
ABCF3-208ENST00000471226 BICRAQ9NZM4 1560 aa30.01■■■□□ 2.39
ABCF3-208ENST00000471226 PABPN1Q86U42 306 aaKnown RBP eCLIP29.97■■■□□ 2.39
ABCF3-208ENST00000471226 SCRIBQ14160 1630 aa29.95■■■□□ 2.38
ABCF3-208ENST00000471226 SHROOM4Q9ULL8 1493 aa29.68■■■□□ 2.34
ABCF3-208ENST00000471226 DNAJC5BQ9UF47 199 aa29.46■■■□□ 2.31
ABCF3-208ENST00000471226 EIF4G1Q04637 1599 aaKnown RBP29.19■■■□□ 2.26
ABCF3-208ENST00000471226 CC2D2AQ9P2K1 1620 aa29.07■■■□□ 2.24
ABCF3-208ENST00000471226 CECR2Q9BXF3 1484 aa28.84■■■□□ 2.21
ABCF3-208ENST00000471226 SMARCA4P51532 1647 aa28.69■■■□□ 2.18
ABCF3-208ENST00000471226 BAZ1AQ9NRL2 1556 aaPredicted RBP28.63■■■□□ 2.17
ABCF3-208ENST00000471226 ATAD2BQ9ULI0 1458 aa28.51■■■□□ 2.15
ABCF3-208ENST00000471226 NCAPD3P42695 1498 aa28.5■■■□□ 2.15
ABCF3-208ENST00000471226 SMARCA2P51531 1590 aa28.48■■■□□ 2.15
ABCF3-208ENST00000471226 MROH2BQ7Z745 1585 aa28.48■■■□□ 2.15
ABCF3-208ENST00000471226 PEG3Q9GZU2 1588 aa28.43■■■□□ 2.14
ABCF3-208ENST00000471226 HMGXB3Q12766 1538 aa28.37■■■□□ 2.13
ABCF3-208ENST00000471226 BAZ1BQ9UIG0 1483 aaKnown RBP28.25■■■□□ 2.11
ABCF3-208ENST00000471226 WIZO95785 1651 aa28.19■■■□□ 2.1
ABCF3-208ENST00000471226 RSF1Q96T23 1441 aaPredicted RBP28.15■■■□□ 2.1
ABCF3-208ENST00000471226 TOP2AP11388 1531 aaKnown RBP27.87■■■□□ 2.05
ABCF3-208ENST00000471226 NESP48681 1621 aa27.79■■■□□ 2.04
ABCF3-208ENST00000471226 LAMC3Q9Y6N6 1575 aa27.75■■■□□ 2.03
ABCF3-208ENST00000471226 CADPSQ9ULU8 1353 aa27.64■■■□□ 2.02
ABCF3-208ENST00000471226 ERCC6Q03468 1493 aa27.63■■■□□ 2.01
ABCF3-208ENST00000471226 CCDC88BA6NC98 1476 aa27.54■■■□□ 2
ABCF3-208ENST00000471226 PDS5BQ9NTI5 1447 aa27.52■■■□□ 2
ABCF3-208ENST00000471226 KIF21AQ7Z4S6 1674 aa27.52■■■□□ 2
ABCF3-208ENST00000471226 CFTRP13569 1480 aa27.51■■□□□ 1.99
ABCF3-208ENST00000471226 THOC2Q8NI27 1593 aaKnown RBP27.4■■□□□ 1.98
ABCF3-208ENST00000471226 CUX2O14529 1486 aa27.38■■□□□ 1.97
ABCF3-208ENST00000471226 SUPT5HO00267 1087 aaKnown RBP27.38■■□□□ 1.97
ABCF3-208ENST00000471226 PRDM2Q13029 1718 aa27.38■■□□□ 1.97
ABCF3-208ENST00000471226 FANCD2Q9BXW9 1451 aa27.32■■□□□ 1.96
ABCF3-208ENST00000471226 CEP164Q9UPV0 1460 aa27.29■■□□□ 1.96
ABCF3-208ENST00000471226 MRC2Q9UBG0 1479 aa27.25■■□□□ 1.95
ABCF3-208ENST00000471226 WDR62O43379 1518 aa27.18■■□□□ 1.94
ABCF3-208ENST00000471226 URB2Q14146 1524 aaKnown RBP27.07■■□□□ 1.92
ABCF3-208ENST00000471226 ABCC8Q09428 1581 aa26.92■■□□□ 1.9
ABCF3-208ENST00000471226 TOPBP1Q92547 1522 aa26.9■■□□□ 1.9
ABCF3-208ENST00000471226 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
ABCF3-208ENST00000471226 IFT140Q96RY7 1462 aa26.72■■□□□ 1.87
ABCF3-208ENST00000471226 CUX1P39880 1505 aa26.71■■□□□ 1.87
ABCF3-208ENST00000471226 POLA1P09884 1462 aaPredicted RBP26.68■■□□□ 1.86
ABCF3-208ENST00000471226 TARBP1Q13395 1621 aaKnown RBP26.65■■□□□ 1.86
ABCF3-208ENST00000471226 FGD5Q6ZNL6 1462 aa26.61■■□□□ 1.85
ABCF3-208ENST00000471226 ZNF608Q9ULD9 1512 aaPredicted RBP26.6■■□□□ 1.85
ABCF3-208ENST00000471226 SOGA1O94964 1423 aa26.56■■□□□ 1.84
ABCF3-208ENST00000471226 RAD54L2Q9Y4B4 1467 aa26.55■■□□□ 1.84
ABCF3-208ENST00000471226 BIVM-ERCC5R4GMW8 1640 aa26.53■■□□□ 1.84
ABCF3-208ENST00000471226 WRNQ14191 1432 aaPredicted RBP eCLIP26.52■■□□□ 1.84
ABCF3-208ENST00000471226 EIF4G3O43432 1585 aaKnown RBP26.51■■□□□ 1.83
ABCF3-208ENST00000471226 DNAJC5Q9H3Z4 198 aa26.51■■□□□ 1.83
ABCF3-208ENST00000471226 TOP2BQ02880 1626 aa26.5■■□□□ 1.83
ABCF3-208ENST00000471226 SYNJ1O43426 1573 aa26.49■■□□□ 1.83
ABCF3-208ENST00000471226 WDR97A6NE52 1622 aa26.45■■□□□ 1.82
ABCF3-208ENST00000471226 AQRO60306 1485 aaKnown RBP eCLIP26.44■■□□□ 1.822e-8■■■■■ 28.7
ABCF3-208ENST00000471226 TDRD9Q8NDG6 1382 aaKnown RBP26.39■■□□□ 1.82
ABCF3-208ENST00000471226 ABCA10Q8WWZ4 1543 aa26.36■■□□□ 1.81
ABCF3-208ENST00000471226 ABCA5Q8WWZ7 1642 aa26.28■■□□□ 1.8
ABCF3-208ENST00000471226 GAPVD1Q14C86 1478 aa26.25■■□□□ 1.79
ABCF3-208ENST00000471226 PBRM1Q86U86 1689 aa26.25■■□□□ 1.79
ABCF3-208ENST00000471226 GRIN2BQ13224 1484 aa26.24■■□□□ 1.79
ABCF3-208ENST00000471226 OSCARQ8IYS5 282 aa26.23■■□□□ 1.79
ABCF3-208ENST00000471226 CHD1O14646 1710 aa26.21■■□□□ 1.79
ABCF3-208ENST00000471226 SNAPC4Q5SXM2 1469 aa26.2■■□□□ 1.78
ABCF3-208ENST00000471226 MAGI1Q96QZ7 1491 aaPredicted RBP26.18■■□□□ 1.78
ABCF3-208ENST00000471226 SYNJ2O15056 1496 aa26.08■■□□□ 1.77
ABCF3-208ENST00000471226 FBLN2P98095 1184 aa26.07■■□□□ 1.76
ABCF3-208ENST00000471226 ERICH3Q5RHP9 1530 aa26.05■■□□□ 1.76
ABCF3-208ENST00000471226 CHMP7Q8WUX9 453 aaPredicted RBP26.03■■□□□ 1.76
ABCF3-208ENST00000471226 ADAMTS12P58397 1594 aa26■■□□□ 1.75
ABCF3-208ENST00000471226 KIF27Q86VH2 1401 aa25.97■■□□□ 1.75
ABCF3-208ENST00000471226 FHAD1B1AJZ9 1412 aa25.95■■□□□ 1.74
ABCF3-208ENST00000471226 GRIN2AQ12879 1464 aa25.91■■□□□ 1.74
ABCF3-208ENST00000471226 CLASP1Q7Z460 1538 aa25.9■■□□□ 1.74
ABCF3-208ENST00000471226 IGF1RP08069 1367 aa25.88■■□□□ 1.73
ABCF3-208ENST00000471226 TRIM41Q8WV44 630 aa25.88■■□□□ 1.73
ABCF3-208ENST00000471226 RIMBP3CA6NJZ7 1639 aa25.85■■□□□ 1.73
ABCF3-208ENST00000471226 RIMBP3BA6NNM3 1639 aa25.85■■□□□ 1.73
ABCF3-208ENST00000471226 RIMBP3Q9UFD9 1639 aa25.85■■□□□ 1.73
ABCF3-208ENST00000471226 CUL7Q14999 1698 aa25.83■■□□□ 1.73
ABCF3-208ENST00000471226 ARHGEF11O15085 1522 aa25.82■■□□□ 1.72
ABCF3-208ENST00000471226 NUP160Q12769 1436 aa25.81■■□□□ 1.72
ABCF3-208ENST00000471226 CEP170Q5SW79 1584 aa25.8■■□□□ 1.72
ABCF3-208ENST00000471226 RUSC2Q8N2Y8 1516 aa25.76■■□□□ 1.71
ABCF3-208ENST00000471226 CARMIL1Q5VZK9 1371 aa25.71■■□□□ 1.71
ABCF3-208ENST00000471226 SHROOM2Q13796 1616 aa25.65■■□□□ 1.7
ABCF3-208ENST00000471226 ARAP1Q96P48 1450 aa25.61■■□□□ 1.69
ABCF3-208ENST00000471226 CHIC1Q5VXU3 224 aa25.61■■□□□ 1.69
ABCF3-208ENST00000471226 RAPGEF2Q9Y4G8 1499 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms