RNA–Protein interactions for RNA: ENST00000473311.5

ABCF3-210, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 5

Gene ABCF3, Length 2,844 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-210ENST00000473311 NISCHQ9Y2I1 1504 aa28.38■■■□□ 2.13
ABCF3-210ENST00000473311 SHROOM4Q9ULL8 1493 aa24.41■■□□□ 1.5
ABCF3-210ENST00000473311 CCDC180Q9P1Z9 1646 aa24.04■■□□□ 1.44
ABCF3-210ENST00000473311 ZCCHC6Q5VYS8 1495 aaKnown RBP24.04■■□□□ 1.44
ABCF3-210ENST00000473311 SUPT5HO00267 1087 aaKnown RBP24.03■■□□□ 1.44
ABCF3-210ENST00000473311 DCAF8L2P0C7V8 631 aa23.6■■□□□ 1.37
ABCF3-210ENST00000473311 CHIC1Q5VXU3 224 aa23.39■■□□□ 1.34
ABCF3-210ENST00000473311 MYO15BQ96JP2 1530 aa23.35■■□□□ 1.33
ABCF3-210ENST00000473311 PELP1Q8IZL8 1130 aaKnown RBP23.32■■□□□ 1.32
ABCF3-210ENST00000473311 DCAF1Q9Y4B6 1507 aa23.24■■□□□ 1.31
ABCF3-210ENST00000473311 HRCP23327 699 aa22.98■■□□□ 1.27
ABCF3-210ENST00000473311 PCGF6Q9BYE7 350 aa22.9■■□□□ 1.26
ABCF3-210ENST00000473311 MYT1Q01538 1121 aa22.8■■□□□ 1.24
ABCF3-210ENST00000473311 LOC105371045A0A1W2PR82 267 aa22.73■■□□□ 1.23
ABCF3-210ENST00000473311 ABCC9O60706 1549 aa22.73■■□□□ 1.23
ABCF3-210ENST00000473311 SCRIBQ14160 1630 aa22.62■■□□□ 1.21
ABCF3-210ENST00000473311 RSF1Q96T23 1441 aaPredicted RBP22.53■■□□□ 1.2
ABCF3-210ENST00000473311 PPARGC1BQ86YN6 1023 aaKnown RBP22.5■■□□□ 1.19
ABCF3-210ENST00000473311 TRIM26Q12899 539 aaPredicted RBP22.39■■□□□ 1.17
ABCF3-210ENST00000473311 RB1CC1Q8TDY2 1594 aa22.35■■□□□ 1.17
ABCF3-210ENST00000473311 TRIM41Q8WV44 630 aa22.35■■□□□ 1.17
ABCF3-210ENST00000473311 FAM9AQ8IZU1 332 aaPredicted RBP22.21■■□□□ 1.15
ABCF3-210ENST00000473311 NACADO15069 1562 aa22.19■■□□□ 1.14
ABCF3-210ENST00000473311 CECR2Q9BXF3 1484 aa22.14■■□□□ 1.14
ABCF3-210ENST00000473311 MROH2BQ7Z745 1585 aa22.09■■□□□ 1.13
ABCF3-210ENST00000473311 EHMT2Q96KQ7 1210 aa22.05■■□□□ 1.12
ABCF3-210ENST00000473311 WIZO95785 1651 aa22■■□□□ 1.11
ABCF3-210ENST00000473311 ZEB1P37275 1124 aaPredicted RBP21.98■■□□□ 1.11
ABCF3-210ENST00000473311 BAZ1AQ9NRL2 1556 aaPredicted RBP21.86■■□□□ 1.09
ABCF3-210ENST00000473311 EIF4G1Q04637 1599 aaKnown RBP21.72■■□□□ 1.07
ABCF3-210ENST00000473311 SCAF1Q9H7N4 1312 aaKnown RBP21.68■■□□□ 1.06
ABCF3-210ENST00000473311 TTBK1Q5TCY1 1321 aaPredicted RBP21.67■■□□□ 1.06
ABCF3-210ENST00000473311 TOP2AP11388 1531 aaKnown RBP21.63■■□□□ 1.05
ABCF3-210ENST00000473311 SMARCA4P51532 1647 aa21.59■■□□□ 1.05
ABCF3-210ENST00000473311 ABCC8Q09428 1581 aa21.59■■□□□ 1.05
ABCF3-210ENST00000473311 CCDC88BA6NC98 1476 aa21.55■■□□□ 1.04
ABCF3-210ENST00000473311 SMARCA2P51531 1590 aa21.52■■□□□ 1.04
ABCF3-210ENST00000473311 UNC13AQ9UPW8 1703 aa21.51■■□□□ 1.03
ABCF3-210ENST00000473311 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.49■■□□□ 1.03
ABCF3-210ENST00000473311 CCER1Q8TC90 406 aaPredicted RBP21.46■■□□□ 1.03
ABCF3-210ENST00000473311 SOGA1O94964 1423 aa21.4■■□□□ 1.02
ABCF3-210ENST00000473311 CEP162Q5TB80 1403 aa21.39■■□□□ 1.02
ABCF3-210ENST00000473311 WRNQ14191 1432 aaPredicted RBP eCLIP21.38■■□□□ 1.01
ABCF3-210ENST00000473311 TNIKQ9UKE5 1360 aa21.33■■□□□ 1
ABCF3-210ENST00000473311 EEA1Q15075 1411 aa21.31■■□□□ 1
ABCF3-210ENST00000473311 CSRNP3Q8WYN3 585 aa21.3■■□□□ 1
ABCF3-210ENST00000473311 UBTFP17480 764 aaKnown RBP21.29■■□□□ 1
ABCF3-210ENST00000473311 RUSC2Q8N2Y8 1516 aa21.28■■□□□ 1
ABCF3-210ENST00000473311 PABPN1Q86U42 306 aaKnown RBP eCLIP21.26■□□□□ 0.991e-6■■■□□ 18.9
ABCF3-210ENST00000473311 GOLGA3Q08378 1498 aa21.2■□□□□ 0.98
ABCF3-210ENST00000473311 BICRAQ9NZM4 1560 aa21.19■□□□□ 0.98
ABCF3-210ENST00000473311 ACIN1Q9UKV3 1341 aaKnown RBP21.13■□□□□ 0.97
ABCF3-210ENST00000473311 PEG3Q9GZU2 1588 aa21.13■□□□□ 0.97
ABCF3-210ENST00000473311 DIEXFQ68CQ4 756 aaKnown RBP21.11■□□□□ 0.97
ABCF3-210ENST00000473311 SYNJ1O43426 1573 aa21.07■□□□□ 0.96
ABCF3-210ENST00000473311 CEP164Q9UPV0 1460 aa21.06■□□□□ 0.96
ABCF3-210ENST00000473311 KIF21BO75037 1637 aa21.01■□□□□ 0.95
ABCF3-210ENST00000473311 NEUROD1Q13562 356 aa20.99■□□□□ 0.95
ABCF3-210ENST00000473311 ATAD2BQ9ULI0 1458 aa20.99■□□□□ 0.95
ABCF3-210ENST00000473311 BAZ1BQ9UIG0 1483 aaKnown RBP20.97■□□□□ 0.95
ABCF3-210ENST00000473311 CLIP1P30622 1438 aa20.97■□□□□ 0.95
ABCF3-210ENST00000473311 CENPBP07199 599 aaPredicted RBP20.94■□□□□ 0.94
ABCF3-210ENST00000473311 HNRNPUL2Q1KMD3 747 aaKnown RBP20.92■□□□□ 0.94
ABCF3-210ENST00000473311 ZNF316A6NFI3 1004 aaPredicted RBP20.9■□□□□ 0.94
ABCF3-210ENST00000473311 VPS8Q8N3P4 1428 aa20.89■□□□□ 0.93
ABCF3-210ENST00000473311 RAPGEF2Q9Y4G8 1499 aa20.87■□□□□ 0.93
ABCF3-210ENST00000473311 APLP2Q06481 763 aa20.87■□□□□ 0.93
ABCF3-210ENST00000473311 GTF3C3Q9Y5Q9 886 aa20.86■□□□□ 0.93
ABCF3-210ENST00000473311 RANGAP1P46060 587 aaPredicted RBP20.85■□□□□ 0.93
ABCF3-210ENST00000473311 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
ABCF3-210ENST00000473311 BCL11AQ9H165 835 aa20.73■□□□□ 0.91
ABCF3-210ENST00000473311 BIVM-ERCC5R4GMW8 1640 aa20.7■□□□□ 0.9
ABCF3-210ENST00000473311 YTHDC1Q96MU7 727 aaKnown RBP20.67■□□□□ 0.9
ABCF3-210ENST00000473311 ERICH3Q5RHP9 1530 aa20.64■□□□□ 0.89
ABCF3-210ENST00000473311 MIER1Q8N108 512 aa20.62■□□□□ 0.89
ABCF3-210ENST00000473311 PRXQ9BXM0 1461 aa20.61■□□□□ 0.89
ABCF3-210ENST00000473311 PRKCSHP14314 528 aaPredicted RBP20.61■□□□□ 0.89
ABCF3-210ENST00000473311 ARAP1Q96P48 1450 aa20.58■□□□□ 0.89
ABCF3-210ENST00000473311 CUX1P39880 1505 aa20.55■□□□□ 0.88
ABCF3-210ENST00000473311 HMGXB3Q12766 1538 aa20.55■□□□□ 0.88
ABCF3-210ENST00000473311 NCAPD3P42695 1498 aa20.52■□□□□ 0.88
ABCF3-210ENST00000473311 KANK4Q5T7N3 995 aaPredicted RBP20.52■□□□□ 0.88
ABCF3-210ENST00000473311 KIF27Q86VH2 1401 aa20.52■□□□□ 0.88
ABCF3-210ENST00000473311 DHX57Q6P158 1386 aaKnown RBP20.49■□□□□ 0.87
ABCF3-210ENST00000473311 CLSPNQ9HAW4 1339 aa20.49■□□□□ 0.87
ABCF3-210ENST00000473311 CFTRP13569 1480 aa20.43■□□□□ 0.86
ABCF3-210ENST00000473311 RRBP1Q9P2E9 1410 aaKnown RBP20.41■□□□□ 0.86
ABCF3-210ENST00000473311 ARHGAP35Q9NRY4 1499 aa20.38■□□□□ 0.85
ABCF3-210ENST00000473311 ANP32EQ9BTT0 268 aa20.35■□□□□ 0.85
ABCF3-210ENST00000473311 CCNB3Q8WWL7 1395 aa20.34■□□□□ 0.85
ABCF3-210ENST00000473311 ITGAEP38570 1179 aa20.32■□□□□ 0.84
ABCF3-210ENST00000473311 ERICH6Q7L0X2 663 aa20.32■□□□□ 0.84
ABCF3-210ENST00000473311 CUX2O14529 1486 aa20.29■□□□□ 0.84
ABCF3-210ENST00000473311 PRDM2Q13029 1718 aa20.29■□□□□ 0.84
ABCF3-210ENST00000473311 IGF1RP08069 1367 aa20.25■□□□□ 0.83
ABCF3-210ENST00000473311 TIAM1Q13009 1591 aa20.2■□□□□ 0.82
ABCF3-210ENST00000473311 CARMIL1Q5VZK9 1371 aa20.2■□□□□ 0.82
ABCF3-210ENST00000473311 RAB3GAP2Q9H2M9 1393 aa20.18■□□□□ 0.82
ABCF3-210ENST00000473311 CADPSQ9ULU8 1353 aa20.18■□□□□ 0.82
ABCF3-210ENST00000473311 FGD5Q6ZNL6 1462 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms