Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.2■□□□□ 0.187e-8■■□□□ 12.6
LSM11P83369 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.68■□□□□ 0.17e-8■■□□□ 12.6
LSM11P83369 CENPX-204ENST00000579520 702 ntTSL 315.02■□□□□ -07e-8■■□□□ 12.6
LSM11P83369 CENPX-210ENST00000584600 730 ntTSL 214.1□□□□□ -0.157e-8■■□□□ 12.6
LSM11P83369 CENPX-208ENST00000584347 799 ntTSL 2 BASIC12.72□□□□□ -0.377e-8■■□□□ 12.6
LSM11P83369 AC004687.1-201ENST00000579003 1625 ntBASIC20.05■□□□□ 0.84e-16■■□□□ 12.6
LSM11P83369 METTL17-222ENST00000556733 510 ntTSL 511.17□□□□□ -0.621e-8■■□□□ 12.6
LSM11P83369 SULT1A1-205ENST00000562058 1876 ntTSL 1 (best)19.04■□□□□ 0.647e-8■■□□□ 12.6
LSM11P83369 SULT1A1-207ENST00000564818 1653 ntTSL 1 (best)18.05■□□□□ 0.487e-8■■□□□ 12.6
LSM11P83369 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.83■□□□□ 0.447e-8■■□□□ 12.6
LSM11P83369 SULT1A1-206ENST00000563493 1651 ntTSL 517.66■□□□□ 0.427e-8■■□□□ 12.6
LSM11P83369 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.287e-8■■□□□ 12.6
LSM11P83369 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.267e-8■■□□□ 12.6
LSM11P83369 SULT1A1-210ENST00000567998 7948 ntTSL 214.04□□□□□ -0.167e-8■■□□□ 12.6
LSM11P83369 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.537e-8■■□□□ 12.6
LSM11P83369 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.67e-8■■□□□ 12.6
LSM11P83369 ACADVL-231ENST00000582450 294 ntTSL 213.05□□□□□ -0.322e-13■■□□□ 12.6
LSM11P83369 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.023e-6■■□□□ 12.6
LSM11P83369 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.63□□□□□ -0.073e-6■■□□□ 12.6
LSM11P83369 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.523e-6■■□□□ 12.6
LSM11P83369 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.553e-6■■□□□ 12.6
LSM11P83369 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.251e-6■■□□□ 12.6
LSM11P83369 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.88□□□□□ -0.031e-6■■□□□ 12.6
LSM11P83369 ASPSCR1-204ENST00000577733 5503 ntTSL 214.81□□□□□ -0.042e-8■■□□□ 12.6
LSM11P83369 CCNL1-207ENST00000465947 793 ntTSL 515.77■□□□□ 0.121e-10■■□□□ 12.6
LSM11P83369 CCNL1-209ENST00000467081 564 ntTSL 313.93□□□□□ -0.181e-10■■□□□ 12.6
LSM11P83369 CCNL1-222ENST00000479596 883 ntTSL 313□□□□□ -0.331e-10■■□□□ 12.6
LSM11P83369 CCNL1-212ENST00000470121 1889 ntTSL 1 (best)12.95□□□□□ -0.341e-10■■□□□ 12.6
LSM11P83369 CCNL1-217ENST00000476367 1603 ntTSL 1 (best)12.93□□□□□ -0.341e-10■■□□□ 12.6
LSM11P83369 CCNL1-219ENST00000477127 1464 ntTSL 512.49□□□□□ -0.411e-10■■□□□ 12.6
LSM11P83369 CCNL1-205ENST00000464575 505 ntTSL 49.76□□□□□ -0.851e-10■■□□□ 12.6
LSM11P83369 CCNL1-220ENST00000478454 580 ntTSL 49.28□□□□□ -0.921e-10■■□□□ 12.6
LSM11P83369 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.785e-13■■□□□ 12.6
LSM11P83369 LPCAT4-205ENST00000563748 1357 ntTSL 214.48□□□□□ -0.095e-13■■□□□ 12.6
LSM11P83369 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC12.16□□□□□ -0.465e-13■■□□□ 12.6
LSM11P83369 LPCAT4-207ENST00000567507 672 ntTSL 37.78□□□□□ -1.165e-13■■□□□ 12.6
LSM11P83369 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.473e-6■■□□□ 12.6
LSM11P83369 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.193e-6■■□□□ 12.6
LSM11P83369 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.85■□□□□ 0.133e-6■■□□□ 12.6
LSM11P83369 VARS2-204ENST00000467717 863 ntTSL 315.3■□□□□ 0.043e-6■■□□□ 12.6
LSM11P83369 IPO4-220ENST00000561462 1864 ntTSL 215.14■□□□□ 0.013e-6■■□□□ 12.6
LSM11P83369 IRAK1-209ENST00000444254 783 ntTSL 515.09■□□□□ 0.013e-6■■□□□ 12.6
LSM11P83369 NOL6-205ENST00000464829 1829 ntTSL 214.66□□□□□ -0.063e-6■■□□□ 12.6
LSM11P83369 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.083e-6■■□□□ 12.6
LSM11P83369 KMT2B-202ENST00000585476 2864 ntTSL 1 (best)14.36□□□□□ -0.113e-6■■□□□ 12.6
LSM11P83369 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.153e-6■■□□□ 12.6
LSM11P83369 IPO4-205ENST00000558233 1015 ntTSL 513.72□□□□□ -0.213e-6■■□□□ 12.6
LSM11P83369 VARS2-203ENST00000428017 1103 ntTSL 213.49□□□□□ -0.253e-6■■□□□ 12.6
LSM11P83369 GORASP2-202ENST00000442798 1976 ntTSL 213.42□□□□□ -0.263e-6■■□□□ 12.6
LSM11P83369 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.337e-9■■□□□ 12.6
LSM11P83369 NOL6-203ENST00000379470 2190 ntTSL 212.23□□□□□ -0.453e-6■■□□□ 12.6
LSM11P83369 GORASP2-207ENST00000486498 2096 ntTSL 212.06□□□□□ -0.483e-6■■□□□ 12.6
LSM11P83369 CES2-211ENST00000568470 3391 ntTSL 211.14□□□□□ -0.633e-6■■□□□ 12.6
LSM11P83369 NOL6-201ENST00000297990 4741 ntAPPRIS P1 TSL 1 (best)11.01□□□□□ -0.653e-6■■□□□ 12.6
LSM11P83369 ELP1-204ENST00000537196 3823 ntTSL 1 (best) BASIC11.01□□□□□ -0.657e-9■■□□□ 12.6
LSM11P83369 CES2-202ENST00000417689 3868 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.663e-6■■□□□ 12.6
LSM11P83369 KMT2B-203ENST00000586308 705 ntTSL 210.79□□□□□ -0.683e-6■■□□□ 12.6
LSM11P83369 VARS2-210ENST00000490699 719 ntTSL 310.71□□□□□ -0.693e-6■■□□□ 12.6
LSM11P83369 CES2-201ENST00000317091 3927 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.763e-6■■□□□ 12.6
LSM11P83369 NOL6-204ENST00000379471 3843 ntTSL 5 BASIC9.95□□□□□ -0.823e-6■■□□□ 12.6
LSM11P83369 TNS3-201ENST00000311160 7618 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.823e-6■■□□□ 12.6
LSM11P83369 NOL6-202ENST00000353159 3411 ntTSL 1 (best)9.33□□□□□ -0.923e-6■■□□□ 12.6
LSM11P83369 TNS3-204ENST00000428457 5070 ntTSL 1 (best)8.96□□□□□ -0.983e-6■■□□□ 12.6
LSM11P83369 ELP1-203ENST00000495759 2840 ntTSL 1 (best)6.58□□□□□ -1.367e-9■■□□□ 12.6
LSM11P83369 HEXDC-205ENST00000578616 862 ntTSL 312.05□□□□□ -0.481e-6■■□□□ 12.6
LSM11P83369 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.751e-7■■□□□ 12.6
LSM11P83369 CYBA-207ENST00000566534 1006 ntTSL 512.5□□□□□ -0.411e-7■■□□□ 12.6
LSM11P83369 CYBA-206ENST00000566229 405 ntTSL 312.5□□□□□ -0.411e-7■■□□□ 12.6
LSM11P83369 CYBA-205ENST00000565588 221 ntTSL 29.59□□□□□ -0.871e-7■■□□□ 12.6
LSM11P83369 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.521e-8■■□□□ 12.6
LSM11P83369 COL9A3-210ENST00000472880 959 ntTSL 317.19■□□□□ 0.342e-9■■□□□ 12.6
LSM11P83369 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.992e-6■■□□□ 12.6
LSM11P83369 GRAMD1A-212ENST00000600231 2534 ntTSL 220.32■□□□□ 0.842e-6■■□□□ 12.6
LSM11P83369 GRAMD1A-207ENST00000598118 2277 ntTSL 1 (best)18.54■□□□□ 0.562e-6■■□□□ 12.6
LSM11P83369 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.97■□□□□ 0.152e-6■■□□□ 12.6
LSM11P83369 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.132e-6■■□□□ 12.6
LSM11P83369 PLCG1-215ENST00000608689 969 ntTSL 512.46□□□□□ -0.417e-9■■□□□ 12.6
LSM11P83369 PLCG1-213ENST00000599785 880 ntTSL 57.6□□□□□ -1.197e-9■■□□□ 12.6
LSM11P83369 ITIH3-209ENST00000493136 2179 ntTSL 213.01□□□□□ -0.339e-11■■□□□ 12.6
LSM11P83369 ITIH3-201ENST00000416872 2220 ntTSL 2 BASIC10.65□□□□□ -0.719e-11■■□□□ 12.6
LSM11P83369 ITIH3-202ENST00000449956 3007 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.19e-11■■□□□ 12.6
LSM11P83369 ITIH3-211ENST00000621946 3038 ntTSL 1 (best) BASIC7.93□□□□□ -1.149e-11■■□□□ 12.6
LSM11P83369 NONO-210ENST00000472185 397 ntTSL 56.63□□□□□ -1.351e-6■■□□□ 12.5
LSM11P83369 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.387e-11■■□□□ 12.5
LSM11P83369 ECHDC2-220ENST00000498544 985 ntTSL 215.68■□□□□ 0.12e-6■■□□□ 12.5
LSM11P83369 ECHDC2-209ENST00000479183 2356 ntTSL 213.64□□□□□ -0.232e-6■■□□□ 12.5
LSM11P83369 ECHDC2-222ENST00000539680 5817 nt7.95□□□□□ -1.142e-6■■□□□ 12.5
LSM11P83369 EPC2-202ENST00000397424 672 ntTSL 316.75■□□□□ 0.273e-6■■□□□ 12.5
LSM11P83369 EPC2-205ENST00000457184 724 ntTSL 516.4■□□□□ 0.223e-6■■□□□ 12.5
LSM11P83369 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.14e-9■■□□□ 12.5
LSM11P83369 PMS2-204ENST00000406569 1719 ntTSL 1 (best)12.82□□□□□ -0.364e-9■■□□□ 12.5
LSM11P83369 PMS2-201ENST00000265849 2855 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.594e-9■■□□□ 12.5
LSM11P83369 VEGFA-216ENST00000512683 475 ntTSL 1 (best)11.02□□□□□ -0.653e-17■■□□□ 12.5
LSM11P83369 PMS2-206ENST00000441476 2730 ntTSL 5 BASIC10.61□□□□□ -0.714e-9■■□□□ 12.5
LSM11P83369 HSPA5-201ENST00000324460 3908 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.834e-9■■□□□ 12.5
LSM11P83369 EPC2-203ENST00000409654 1624 ntTSL 3 BASIC9.72□□□□□ -0.853e-6■■□□□ 12.5
LSM11P83369 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC7.91□□□□□ -1.144e-9■■□□□ 12.5
LSM11P83369 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.543e-6■■□□□ 12.5
LSM11P83369 CDK5RAP3-236ENST00000584991 1862 ntTSL 513.76□□□□□ -0.213e-9■■□□□ 12.5
LSM11P83369 CDK5RAP3-218ENST00000580391 1957 ntTSL 513.74□□□□□ -0.213e-9■■□□□ 12.5
Retrieved 100 of 11,495 protein–RNA pairs in 81.2 ms