Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.68■□□□□ 0.58
CLPTM1O96005 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 AP000997.3-201ENST00000623333 2250 ntBASIC18.67■□□□□ 0.58
CLPTM1O96005 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.67■□□□□ 0.58
CLPTM1O96005 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CLPTM1O96005 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CLPTM1O96005 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.67■□□□□ 0.58
CLPTM1O96005 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.67■□□□□ 0.58
CLPTM1O96005 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
CLPTM1O96005 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.67■□□□□ 0.58
CLPTM1O96005 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.67■□□□□ 0.58
CLPTM1O96005 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLPTM1O96005 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.66■□□□□ 0.58
CLPTM1O96005 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CLPTM1O96005 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 AL390961.4-201ENST00000623958 2535 ntBASIC18.66■□□□□ 0.58
CLPTM1O96005 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLPTM1O96005 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.66■□□□□ 0.58
CLPTM1O96005 TREX1-205ENST00000625293 1783 ntBASIC18.66■□□□□ 0.58
CLPTM1O96005 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.66■□□□□ 0.58
CLPTM1O96005 HCG11-201ENST00000411553 5696 ntBASIC18.66■□□□□ 0.58
CLPTM1O96005 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.66■□□□□ 0.58
CLPTM1O96005 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.66■□□□□ 0.58
CLPTM1O96005 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.66■□□□□ 0.58
CLPTM1O96005 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CLPTM1O96005 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
CLPTM1O96005 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.66■□□□□ 0.58
CLPTM1O96005 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.66■□□□□ 0.58
CLPTM1O96005 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.66■□□□□ 0.58
CLPTM1O96005 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLPTM1O96005 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLPTM1O96005 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
CLPTM1O96005 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CLPTM1O96005 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CLPTM1O96005 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.65■□□□□ 0.58
CLPTM1O96005 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.65■□□□□ 0.58
CLPTM1O96005 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.65■□□□□ 0.58
CLPTM1O96005 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.65■□□□□ 0.58
CLPTM1O96005 MIR6084-201ENST00000622012 110 ntBASIC18.65■□□□□ 0.58
CLPTM1O96005 AC105233.4-201ENST00000642045 216 ntBASIC18.65■□□□□ 0.58
CLPTM1O96005 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.65■□□□□ 0.58
CLPTM1O96005 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLPTM1O96005 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.64■□□□□ 0.58
CLPTM1O96005 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLPTM1O96005 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
CLPTM1O96005 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLPTM1O96005 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.64■□□□□ 0.57
CLPTM1O96005 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.64■□□□□ 0.57
CLPTM1O96005 AL133373.2-201ENST00000623187 2828 ntBASIC18.64■□□□□ 0.57
CLPTM1O96005 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLPTM1O96005 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLPTM1O96005 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
CLPTM1O96005 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms