Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 REXO2-218ENST00000544827 880 ntTSL 3 BASIC5.28□□□□□ -1.562e-6■■□□□ 11.8
U2AF1Q01081 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.612e-6■■□□□ 11.8
U2AF1Q01081 REXO2-203ENST00000538403 753 ntTSL 24.5□□□□□ -1.692e-6■■□□□ 11.8
U2AF1Q01081 TFPI-208ENST00000435414 687 ntTSL 54.45□□□□□ -1.72e-6■■□□□ 11.8
U2AF1Q01081 TFPI-212ENST00000481389 599 ntTSL 54.39□□□□□ -1.712e-6■■□□□ 11.8
U2AF1Q01081 REXO2-209ENST00000539788 626 ntTSL 34.09□□□□□ -1.752e-6■■□□□ 11.8
U2AF1Q01081 REXO2-219ENST00000546316 726 ntTSL 33.66□□□□□ -1.822e-6■■□□□ 11.8
U2AF1Q01081 XPOT-203ENST00000538086 787 ntTSL 55.13□□□□□ -1.593e-7■■□□□ 11.8
U2AF1Q01081 XPOT-206ENST00000542958 1321 ntTSL 54.68□□□□□ -1.663e-7■■□□□ 11.8
U2AF1Q01081 USP48-203ENST00000374732 3037 ntTSL 2 BASIC9.75□□□□□ -0.852e-6■■□□□ 11.8
U2AF1Q01081 ATXN2L-221ENST00000566946 2162 ntTSL 1 (best)26.96■■□□□ 1.912e-11■■□□□ 11.8
U2AF1Q01081 ATXN2L-208ENST00000562583 1933 ntTSL 1 (best)23.96■■□□□ 1.432e-11■■□□□ 11.8
U2AF1Q01081 ATXN2L-213ENST00000564162 770 ntTSL 523.28■■□□□ 1.322e-11■■□□□ 11.8
U2AF1Q01081 ATXN2L-219ENST00000566007 471 ntTSL 312.12□□□□□ -0.472e-11■■□□□ 11.8
U2AF1Q01081 PHF14-214ENST00000521747 2479 ntTSL 229.82■■■□□ 2.361e-6■■□□□ 11.8
U2AF1Q01081 PHF14-202ENST00000423760 2627 ntTSL 227.94■■■□□ 2.061e-6■■□□□ 11.8
U2AF1Q01081 PHF14-206ENST00000476009 1044 ntTSL 325.55■■□□□ 1.681e-6■■□□□ 11.8
U2AF1Q01081 GOLGA4-203ENST00000419177 760 ntTSL 321.85■■□□□ 1.091e-6■■□□□ 11.8
U2AF1Q01081 GOLGA4-205ENST00000431105 568 ntTSL 319.46■□□□□ 0.711e-6■■□□□ 11.8
U2AF1Q01081 PHF14-210ENST00000490957 4058 ntTSL 519.06■□□□□ 0.641e-6■■□□□ 11.8
U2AF1Q01081 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.611e-6■■□□□ 11.8
U2AF1Q01081 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC17.89■□□□□ 0.451e-6■■□□□ 11.8
U2AF1Q01081 FUBP1-211ENST00000489495 2156 ntTSL 24.2□□□□□ -1.741e-6■■□□□ 11.8
U2AF1Q01081 GCKR-205ENST00000472290 1302 ntTSL 1 (best)17.84■□□□□ 0.459e-7■■□□□ 11.8
U2AF1Q01081 SAT2-214ENST00000576846 1563 nt32.86■■■□□ 2.856e-11■■□□□ 11.8
U2AF1Q01081 SAT2-202ENST00000380466 974 ntTSL 1 (best)18.7■□□□□ 0.586e-11■■□□□ 11.8
U2AF1Q01081 SAT2-213ENST00000576686 582 ntTSL 218.45■□□□□ 0.546e-11■■□□□ 11.8
U2AF1Q01081 SAT2-206ENST00000571195 814 ntTSL 216.98■□□□□ 0.316e-11■■□□□ 11.8
U2AF1Q01081 SAT2-205ENST00000571074 860 ntTSL 216.03■□□□□ 0.166e-11■■□□□ 11.8
U2AF1Q01081 SAT2-208ENST00000573566 640 ntTSL 2 BASIC15.32■□□□□ 0.046e-11■■□□□ 11.8
U2AF1Q01081 SAT2-211ENST00000575826 838 ntTSL 314.44□□□□□ -0.16e-11■■□□□ 11.8
U2AF1Q01081 SAT2-212ENST00000576579 535 ntTSL 313.93□□□□□ -0.186e-11■■□□□ 11.8
U2AF1Q01081 SAT2-201ENST00000269298 946 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.256e-11■■□□□ 11.8
U2AF1Q01081 SAT2-203ENST00000570850 685 ntTSL 311.74□□□□□ -0.536e-11■■□□□ 11.8
U2AF1Q01081 SAT2-204ENST00000570914 765 ntTSL 210.18□□□□□ -0.786e-11■■□□□ 11.8
U2AF1Q01081 SNRNP40-201ENST00000263694 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.335e-8■■□□□ 11.8
U2AF1Q01081 SNRNP40-202ENST00000373720 1087 ntTSL 1 (best) BASIC11.29□□□□□ -0.65e-8■■□□□ 11.8
U2AF1Q01081 SNRNP40-206ENST00000489853 1928 ntTSL 25.52□□□□□ -1.535e-8■■□□□ 11.8
U2AF1Q01081 HSPA8-220ENST00000533238 465 ntTSL 38.5□□□□□ -1.051e-28■■□□□ 11.8
U2AF1Q01081 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.882e-6■■□□□ 11.8
U2AF1Q01081 DMXL1-203ENST00000503802 1835 ntTSL 1 (best)13.92□□□□□ -0.182e-7■■□□□ 11.7
U2AF1Q01081 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC8.35□□□□□ -1.072e-7■■□□□ 11.7
U2AF1Q01081 DMXL1-204ENST00000504031 569 ntTSL 45.63□□□□□ -1.512e-7■■□□□ 11.7
U2AF1Q01081 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.692e-7■■□□□ 11.7
U2AF1Q01081 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.562e-11■■□□□ 11.7
U2AF1Q01081 FAM118A-207ENST00000459849 695 ntTSL 318.16■□□□□ 0.52e-11■■□□□ 11.7
U2AF1Q01081 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.022e-11■■□□□ 11.7
U2AF1Q01081 FAM118A-209ENST00000476478 354 ntTSL 314.74□□□□□ -0.052e-11■■□□□ 11.7
U2AF1Q01081 FAM118A-210ENST00000476754 675 ntTSL 314.69□□□□□ -0.062e-11■■□□□ 11.7
U2AF1Q01081 FAM118A-215ENST00000487732 677 ntTSL 312.48□□□□□ -0.412e-11■■□□□ 11.7
U2AF1Q01081 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.38e-8■■□□□ 11.7
U2AF1Q01081 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.598e-8■■□□□ 11.7
U2AF1Q01081 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.748e-8■■□□□ 11.7
U2AF1Q01081 ZNF207-211ENST00000579810 979 ntTSL 510.72□□□□□ -0.691e-7■■□□□ 11.7
U2AF1Q01081 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC10.15□□□□□ -0.793e-12■■□□□ 11.7
U2AF1Q01081 ZNF207-213ENST00000581531 3560 ntTSL 57.15□□□□□ -1.263e-12■■□□□ 11.7
U2AF1Q01081 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.483e-12■■□□□ 11.7
U2AF1Q01081 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.27■■■□□ 2.445e-9■■□□□ 11.7
U2AF1Q01081 PABPC1L-213ENST00000481196 488 ntTSL 513.69□□□□□ -0.225e-9■■□□□ 11.7
U2AF1Q01081 FARP1-205ENST00000457029 602 ntTSL 511.49□□□□□ -0.571e-11■■□□□ 11.7
U2AF1Q01081 FN1-213ENST00000456923 3720 ntTSL 28.04□□□□□ -1.125e-9■■□□□ 11.7
U2AF1Q01081 HNRNPA1-205ENST00000547566 1234 ntTSL 1 (best)21.56■■□□□ 1.042e-23■■□□□ 11.7
U2AF1Q01081 HNRNPA1-203ENST00000546500 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.222e-23■■□□□ 11.7
U2AF1Q01081 HNRNPA1-211ENST00000551665 925 ntTSL 211.74□□□□□ -0.532e-23■■□□□ 11.7
U2AF1Q01081 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC8.81□□□□□ -12e-23■■□□□ 11.7
U2AF1Q01081 HNRNPA1-214ENST00000551803 372 ntTSL 35.59□□□□□ -1.512e-23■■□□□ 11.7
U2AF1Q01081 VWDE-202ENST00000326715 1394 ntTSL 519.42■□□□□ 0.73e-8■■□□□ 11.7
U2AF1Q01081 ARFGAP1-214ENST00000520485 1548 ntTSL 230.71■■■□□ 2.518e-11■■□□□ 11.7
U2AF1Q01081 PAN3-204ENST00000503791 2443 ntTSL 229.37■■■□□ 2.298e-6■■□□□ 11.7
U2AF1Q01081 TFR2-207ENST00000473374 891 ntTSL 528.42■■■□□ 2.142e-8■■□□□ 11.7
U2AF1Q01081 ARFGAP1-208ENST00000518691 1162 ntTSL 225.81■■□□□ 1.728e-11■■□□□ 11.7
U2AF1Q01081 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC25.46■■□□□ 1.678e-6■■□□□ 11.7
U2AF1Q01081 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC24.5■■□□□ 1.518e-6■■□□□ 11.7
U2AF1Q01081 TFR2-204ENST00000462090 1844 ntTSL 524.35■■□□□ 1.492e-8■■□□□ 11.7
U2AF1Q01081 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.488e-6■■□□□ 11.7
U2AF1Q01081 TFR2-208ENST00000473571 628 ntTSL 323.86■■□□□ 1.412e-8■■□□□ 11.7
U2AF1Q01081 SLC29A2-204ENST00000541567 2272 ntTSL 1 (best)23.72■■□□□ 1.398e-6■■□□□ 11.7
U2AF1Q01081 ARFGAP1-213ENST00000520022 558 ntTSL 423.49■■□□□ 1.358e-11■■□□□ 11.7
U2AF1Q01081 ARFGAP1-209ENST00000518794 2727 ntTSL 1 (best)23.28■■□□□ 1.328e-11■■□□□ 11.7
U2AF1Q01081 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.228e-6■■□□□ 11.7
U2AF1Q01081 TFR2-212ENST00000476304 2421 ntTSL 522.67■■□□□ 1.222e-8■■□□□ 11.7
U2AF1Q01081 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC22.44■■□□□ 1.188e-11■■□□□ 11.7
U2AF1Q01081 TFR2-213ENST00000490084 2196 ntTSL 222.2■■□□□ 1.142e-8■■□□□ 11.7
U2AF1Q01081 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.088e-6■■□□□ 11.7
U2AF1Q01081 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.088e-6■■□□□ 11.7
U2AF1Q01081 ARFGAP1-215ENST00000522403 995 ntTSL 521.63■■□□□ 1.058e-11■■□□□ 11.7
U2AF1Q01081 ARFGAP1-205ENST00000468975 2640 ntTSL 221.62■■□□□ 1.058e-11■■□□□ 11.7
U2AF1Q01081 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC21.62■■□□□ 1.051e-7■■□□□ 11.7
U2AF1Q01081 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.948e-11■■□□□ 11.7
U2AF1Q01081 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC20.75■□□□□ 0.918e-11■■□□□ 11.7
U2AF1Q01081 SLC29A2-203ENST00000540386 2474 ntTSL 1 (best)20.69■□□□□ 0.98e-6■■□□□ 11.7
U2AF1Q01081 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC20.36■□□□□ 0.858e-6■■□□□ 11.7
U2AF1Q01081 ARFGAP1-221ENST00000549047 1040 ntTSL 520.34■□□□□ 0.858e-11■■□□□ 11.7
U2AF1Q01081 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC20.22■□□□□ 0.832e-8■■□□□ 11.7
U2AF1Q01081 PGGHG-206ENST00000476372 2879 ntTSL 219.75■□□□□ 0.758e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-227ENST00000523576 860 ntTSL 319.47■□□□□ 0.718e-6■■□□□ 11.7
U2AF1Q01081 TFR2-209ENST00000473963 771 ntTSL 319.22■□□□□ 0.672e-8■■□□□ 11.7
U2AF1Q01081 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.632e-8■■□□□ 11.7
U2AF1Q01081 ARFGAP1-218ENST00000523460 572 ntTSL 418.87■□□□□ 0.618e-11■■□□□ 11.7
U2AF1Q01081 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.582e-8■■□□□ 11.7
Retrieved 100 of 10,096 protein–RNA pairs in 56.3 ms