Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USE1Q9NZ43 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
USE1Q9NZ43 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USE1Q9NZ43 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
USE1Q9NZ43 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.01■■□□□ 1.43
USE1Q9NZ43 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USE1Q9NZ43 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
USE1Q9NZ43 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
USE1Q9NZ43 AC135731.1-201ENST00000569415 2548 ntBASIC24■■□□□ 1.43
USE1Q9NZ43 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
USE1Q9NZ43 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24■■□□□ 1.43
USE1Q9NZ43 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USE1Q9NZ43 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
USE1Q9NZ43 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.99■■□□□ 1.43
USE1Q9NZ43 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
USE1Q9NZ43 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USE1Q9NZ43 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
USE1Q9NZ43 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USE1Q9NZ43 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.98■■□□□ 1.43
USE1Q9NZ43 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USE1Q9NZ43 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USE1Q9NZ43 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USE1Q9NZ43 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USE1Q9NZ43 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.97■■□□□ 1.43
USE1Q9NZ43 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.96■■□□□ 1.43
USE1Q9NZ43 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
USE1Q9NZ43 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USE1Q9NZ43 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.96■■□□□ 1.43
USE1Q9NZ43 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.96■■□□□ 1.43
USE1Q9NZ43 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USE1Q9NZ43 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
USE1Q9NZ43 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USE1Q9NZ43 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.95■■□□□ 1.42
USE1Q9NZ43 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USE1Q9NZ43 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USE1Q9NZ43 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USE1Q9NZ43 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
USE1Q9NZ43 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USE1Q9NZ43 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.93■■□□□ 1.42
USE1Q9NZ43 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.93■■□□□ 1.42
USE1Q9NZ43 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
USE1Q9NZ43 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
USE1Q9NZ43 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
USE1Q9NZ43 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
USE1Q9NZ43 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.91■■□□□ 1.42
USE1Q9NZ43 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
USE1Q9NZ43 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USE1Q9NZ43 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.9■■□□□ 1.42
USE1Q9NZ43 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
USE1Q9NZ43 AL031258.1-201ENST00000623562 325 ntBASIC23.9■■□□□ 1.42
USE1Q9NZ43 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
USE1Q9NZ43 AC010864.1-201ENST00000609407 1511 ntBASIC23.89■■□□□ 1.42
USE1Q9NZ43 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.89■■□□□ 1.41
USE1Q9NZ43 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USE1Q9NZ43 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
USE1Q9NZ43 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USE1Q9NZ43 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.88■■□□□ 1.41
USE1Q9NZ43 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USE1Q9NZ43 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
USE1Q9NZ43 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
USE1Q9NZ43 WASH5P-204ENST00000632292 975 ntBASIC23.87■■□□□ 1.41
USE1Q9NZ43 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.87■■□□□ 1.41
USE1Q9NZ43 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USE1Q9NZ43 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USE1Q9NZ43 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.85■■□□□ 1.41
USE1Q9NZ43 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USE1Q9NZ43 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USE1Q9NZ43 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USE1Q9NZ43 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC23.84■■□□□ 1.41
USE1Q9NZ43 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
USE1Q9NZ43 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.83■■□□□ 1.41
USE1Q9NZ43 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
USE1Q9NZ43 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
USE1Q9NZ43 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
USE1Q9NZ43 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USE1Q9NZ43 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USE1Q9NZ43 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.82■■□□□ 1.4
USE1Q9NZ43 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
USE1Q9NZ43 AP004833.2-201ENST00000532228 1454 ntBASIC23.81■■□□□ 1.4
USE1Q9NZ43 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
USE1Q9NZ43 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USE1Q9NZ43 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USE1Q9NZ43 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USE1Q9NZ43 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USE1Q9NZ43 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USE1Q9NZ43 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
USE1Q9NZ43 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USE1Q9NZ43 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
USE1Q9NZ43 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USE1Q9NZ43 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
USE1Q9NZ43 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USE1Q9NZ43 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USE1Q9NZ43 LINC01003-201ENST00000564834 1764 ntBASIC23.77■■□□□ 1.4
USE1Q9NZ43 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.77■■□□□ 1.4
USE1Q9NZ43 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.77■■□□□ 1.4
USE1Q9NZ43 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
USE1Q9NZ43 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
USE1Q9NZ43 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USE1Q9NZ43 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.76■■□□□ 1.39
USE1Q9NZ43 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms