Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CX3CL1P78423 AC087741.3-201ENST00000624270 1347 ntBASIC20.74■□□□□ 0.91
CX3CL1P78423 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CX3CL1P78423 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CX3CL1P78423 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CX3CL1P78423 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CX3CL1P78423 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.72■□□□□ 0.91
CX3CL1P78423 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CX3CL1P78423 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CX3CL1P78423 AC108673.1-201ENST00000510422 1159 ntBASIC20.71■□□□□ 0.91
CX3CL1P78423 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.7■□□□□ 0.9
CX3CL1P78423 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.7■□□□□ 0.9
CX3CL1P78423 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CX3CL1P78423 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CX3CL1P78423 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.7■□□□□ 0.9
CX3CL1P78423 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CX3CL1P78423 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
CX3CL1P78423 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CX3CL1P78423 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
CX3CL1P78423 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CX3CL1P78423 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.67■□□□□ 0.9
CX3CL1P78423 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.67■□□□□ 0.9
CX3CL1P78423 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CX3CL1P78423 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CX3CL1P78423 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CX3CL1P78423 AC044849.2-201ENST00000606596 710 ntBASIC20.66■□□□□ 0.9
CX3CL1P78423 MIR6090-201ENST00000622481 60 ntBASIC20.66■□□□□ 0.9
CX3CL1P78423 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CX3CL1P78423 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CX3CL1P78423 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CX3CL1P78423 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CX3CL1P78423 RPS2P35-201ENST00000443417 897 ntBASIC20.65■□□□□ 0.9
CX3CL1P78423 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CX3CL1P78423 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CX3CL1P78423 AC127502.1-201ENST00000399971 1502 ntBASIC20.63■□□□□ 0.89
CX3CL1P78423 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CX3CL1P78423 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CX3CL1P78423 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CX3CL1P78423 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CX3CL1P78423 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CX3CL1P78423 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CX3CL1P78423 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CX3CL1P78423 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CX3CL1P78423 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.61■□□□□ 0.89
CX3CL1P78423 AL139393.2-201ENST00000608721 2025 ntBASIC20.61■□□□□ 0.89
CX3CL1P78423 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.61■□□□□ 0.89
CX3CL1P78423 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CX3CL1P78423 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CX3CL1P78423 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CX3CL1P78423 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.58■□□□□ 0.89
CX3CL1P78423 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CX3CL1P78423 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CX3CL1P78423 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CX3CL1P78423 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.58■□□□□ 0.89
CX3CL1P78423 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CX3CL1P78423 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CX3CL1P78423 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.57■□□□□ 0.88
CX3CL1P78423 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CX3CL1P78423 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CX3CL1P78423 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CX3CL1P78423 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CX3CL1P78423 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CX3CL1P78423 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.56■□□□□ 0.88
CX3CL1P78423 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CX3CL1P78423 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.56■□□□□ 0.88
CX3CL1P78423 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CX3CL1P78423 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.54■□□□□ 0.88
CX3CL1P78423 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.54■□□□□ 0.88
CX3CL1P78423 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CX3CL1P78423 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CX3CL1P78423 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CX3CL1P78423 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.52■□□□□ 0.88
CX3CL1P78423 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CX3CL1P78423 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.52■□□□□ 0.87
CX3CL1P78423 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.52■□□□□ 0.87
CX3CL1P78423 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CX3CL1P78423 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CX3CL1P78423 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.51■□□□□ 0.87
CX3CL1P78423 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CX3CL1P78423 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CX3CL1P78423 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.51■□□□□ 0.87
CX3CL1P78423 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CX3CL1P78423 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CX3CL1P78423 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms