Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CX3CL1P78423 AC087741.3-201ENST00000624270 1347 ntBASIC20.74■□□□□ 0.91
CX3CL1P78423 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CX3CL1P78423 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CX3CL1P78423 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CX3CL1P78423 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CX3CL1P78423 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.72■□□□□ 0.91
CX3CL1P78423 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CX3CL1P78423 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CX3CL1P78423 AC108673.1-201ENST00000510422 1159 ntBASIC20.71■□□□□ 0.91
CX3CL1P78423 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.7■□□□□ 0.9
CX3CL1P78423 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.7■□□□□ 0.9
CX3CL1P78423 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CX3CL1P78423 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CX3CL1P78423 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.7■□□□□ 0.9
CX3CL1P78423 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CX3CL1P78423 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
CX3CL1P78423 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CX3CL1P78423 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
CX3CL1P78423 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CX3CL1P78423 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CX3CL1P78423 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.67■□□□□ 0.9
CX3CL1P78423 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.67■□□□□ 0.9
CX3CL1P78423 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CX3CL1P78423 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CX3CL1P78423 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CX3CL1P78423 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CX3CL1P78423 AC044849.2-201ENST00000606596 710 ntBASIC20.66■□□□□ 0.9
CX3CL1P78423 MIR6090-201ENST00000622481 60 ntBASIC20.66■□□□□ 0.9
CX3CL1P78423 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CX3CL1P78423 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CX3CL1P78423 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CX3CL1P78423 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CX3CL1P78423 RPS2P35-201ENST00000443417 897 ntBASIC20.65■□□□□ 0.9
CX3CL1P78423 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CX3CL1P78423 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CX3CL1P78423 AC127502.1-201ENST00000399971 1502 ntBASIC20.63■□□□□ 0.89
CX3CL1P78423 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CX3CL1P78423 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CX3CL1P78423 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CX3CL1P78423 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CX3CL1P78423 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CX3CL1P78423 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CX3CL1P78423 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CX3CL1P78423 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CX3CL1P78423 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.61■□□□□ 0.89
CX3CL1P78423 AL139393.2-201ENST00000608721 2025 ntBASIC20.61■□□□□ 0.89
CX3CL1P78423 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.61■□□□□ 0.89
CX3CL1P78423 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CX3CL1P78423 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CX3CL1P78423 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CX3CL1P78423 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.58■□□□□ 0.89
CX3CL1P78423 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CX3CL1P78423 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CX3CL1P78423 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CX3CL1P78423 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.58■□□□□ 0.89
CX3CL1P78423 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CX3CL1P78423 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CX3CL1P78423 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.57■□□□□ 0.88
CX3CL1P78423 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CX3CL1P78423 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CX3CL1P78423 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CX3CL1P78423 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CX3CL1P78423 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CX3CL1P78423 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.56■□□□□ 0.88
CX3CL1P78423 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CX3CL1P78423 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.56■□□□□ 0.88
CX3CL1P78423 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CX3CL1P78423 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.54■□□□□ 0.88
CX3CL1P78423 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.54■□□□□ 0.88
CX3CL1P78423 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CX3CL1P78423 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CX3CL1P78423 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CX3CL1P78423 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.52■□□□□ 0.88
CX3CL1P78423 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CX3CL1P78423 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.52■□□□□ 0.87
CX3CL1P78423 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.52■□□□□ 0.87
CX3CL1P78423 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CX3CL1P78423 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CX3CL1P78423 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.51■□□□□ 0.87
CX3CL1P78423 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CX3CL1P78423 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CX3CL1P78423 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.51■□□□□ 0.87
CX3CL1P78423 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CX3CL1P78423 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CX3CL1P78423 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CX3CL1P78423 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms