Protein–RNA interactions for Protein: P05060

CHGB, Secretogranin-1, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHGBP05060 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
CHGBP05060 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.48■■■□□ 2.63
CHGBP05060 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.48■■■□□ 2.63
CHGBP05060 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CHGBP05060 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CHGBP05060 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CHGBP05060 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHGBP05060 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
CHGBP05060 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHGBP05060 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.45■■■□□ 2.63
CHGBP05060 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.45■■■□□ 2.63
CHGBP05060 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.45■■■□□ 2.63
CHGBP05060 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CHGBP05060 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CHGBP05060 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.44■■■□□ 2.62
CHGBP05060 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CHGBP05060 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CHGBP05060 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CHGBP05060 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
CHGBP05060 ZNRF2P2-203ENST00000454624 420 ntBASIC31.43■■■□□ 2.62
CHGBP05060 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
CHGBP05060 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.43■■■□□ 2.62
CHGBP05060 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.43■■■□□ 2.62
CHGBP05060 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CHGBP05060 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CHGBP05060 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
CHGBP05060 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.41■■■□□ 2.62
CHGBP05060 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
CHGBP05060 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CHGBP05060 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.4■■■□□ 2.62
CHGBP05060 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.4■■■□□ 2.62
CHGBP05060 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
CHGBP05060 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.39■■■□□ 2.62
CHGBP05060 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.61
CHGBP05060 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CHGBP05060 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
CHGBP05060 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CHGBP05060 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CHGBP05060 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CHGBP05060 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
CHGBP05060 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.35■■■□□ 2.61
CHGBP05060 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CHGBP05060 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.35■■■□□ 2.61
CHGBP05060 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.34■■■□□ 2.61
CHGBP05060 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
CHGBP05060 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.33■■■□□ 2.61
CHGBP05060 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
CHGBP05060 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CHGBP05060 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
CHGBP05060 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CHGBP05060 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CHGBP05060 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
CHGBP05060 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CHGBP05060 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
CHGBP05060 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CHGBP05060 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CHGBP05060 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CHGBP05060 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
CHGBP05060 MIR7108-201ENST00000614319 87 ntBASIC31.3■■■□□ 2.6
CHGBP05060 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CHGBP05060 ABCB10P3-201ENST00000561950 2166 ntBASIC31.29■■■□□ 2.6
CHGBP05060 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CHGBP05060 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
CHGBP05060 AL139393.2-201ENST00000608721 2025 ntBASIC31.29■■■□□ 2.6
CHGBP05060 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.28■■■□□ 2.6
CHGBP05060 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.28■■■□□ 2.6
CHGBP05060 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.28■■■□□ 2.6
CHGBP05060 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
CHGBP05060 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CHGBP05060 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CHGBP05060 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.27■■■□□ 2.6
CHGBP05060 WHAMMP2-203ENST00000563942 1603 ntBASIC31.26■■■□□ 2.59
CHGBP05060 LINC00273-201ENST00000539813 1452 ntBASIC31.26■■■□□ 2.59
CHGBP05060 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.25■■■□□ 2.59
CHGBP05060 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.25■■■□□ 2.59
CHGBP05060 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.23■■■□□ 2.59
CHGBP05060 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.23■■■□□ 2.59
CHGBP05060 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.23■■■□□ 2.59
CHGBP05060 AC135983.2-203ENST00000454486 1613 ntBASIC31.22■■■□□ 2.59
CHGBP05060 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CHGBP05060 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.21■■■□□ 2.59
CHGBP05060 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
CHGBP05060 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
CHGBP05060 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.2■■■□□ 2.58
CHGBP05060 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.19■■■□□ 2.58
CHGBP05060 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
CHGBP05060 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC31.18■■■□□ 2.58
CHGBP05060 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
CHGBP05060 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.18■■■□□ 2.58
CHGBP05060 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
CHGBP05060 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CHGBP05060 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CHGBP05060 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.16■■■□□ 2.58
CHGBP05060 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CHGBP05060 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CHGBP05060 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.15■■■□□ 2.58
CHGBP05060 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CHGBP05060 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CHGBP05060 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
CHGBP05060 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms