Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 UBE2L3-201ENST00000342192 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.44e-16■■■■□ 23.8
UPF1Q92900 UBE2L3-202ENST00000458578 3007 ntTSL 2 BASIC11.03□□□□□ -0.644e-16■■■■□ 23.8
UPF1Q92900 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC20.25■□□□□ 0.833e-11■■■■□ 23.8
UPF1Q92900 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC20.67■□□□□ 0.92e-8■■■■□ 23.8
UPF1Q92900 MAP1A-201ENST00000300231 10258 ntAPPRIS P2 TSL 5 BASIC11.49□□□□□ -0.573e-6■■■■□ 23.8
UPF1Q92900 MAP1A-202ENST00000382031 10553 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.793e-6■■■■□ 23.8
UPF1Q92900 SORBS3-203ENST00000517535 3067 ntTSL 219.5■□□□□ 0.713e-23■■■■□ 23.8
UPF1Q92900 TBC1D9B-217ENST00000522472 668 ntTSL 520■□□□□ 0.792e-11■■■■□ 23.8
UPF1Q92900 TBC1D9B-212ENST00000521469 2741 ntTSL 1 (best)16.81■□□□□ 0.282e-11■■■■□ 23.8
UPF1Q92900 TBC1D9B-210ENST00000520794 2958 ntTSL 216.45■□□□□ 0.222e-11■■■■□ 23.8
UPF1Q92900 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.22e-11■■■■□ 23.8
UPF1Q92900 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.172e-11■■■■□ 23.8
UPF1Q92900 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.45□□□□□ -0.262e-11■■■■□ 23.8
UPF1Q92900 TBC1D9B-204ENST00000518085 3838 ntTSL 1 (best)10.96□□□□□ -0.662e-11■■■■□ 23.8
UPF1Q92900 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC24.32■■□□□ 1.483e-12■■■■□ 23.8
UPF1Q92900 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC24.67■■□□□ 1.545e-10■■■■□ 23.8
UPF1Q92900 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.494e-7■■■■□ 23.8
UPF1Q92900 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.51e-6■■■■□ 23.8
UPF1Q92900 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.56■□□□□ 0.243e-9■■■■□ 23.8
UPF1Q92900 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.665e-7■■■■□ 23.8
UPF1Q92900 STK11-207ENST00000589152 3365 ntTSL 214.68□□□□□ -0.065e-7■■■■□ 23.8
UPF1Q92900 STK11-202ENST00000585465 3554 ntTSL 513.18□□□□□ -0.35e-7■■■■□ 23.8
UPF1Q92900 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.091e-7■■■■□ 23.7
UPF1Q92900 DDR1-226ENST00000376569 3783 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.361e-7■■■■□ 23.7
UPF1Q92900 DDR1-224ENST00000376567 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.381e-7■■■■□ 23.7
UPF1Q92900 DDR1-223ENST00000324771 4148 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.461e-7■■■■□ 23.7
UPF1Q92900 DDR1-240ENST00000454612 3942 ntAPPRIS P3 TSL 5 BASIC12.07□□□□□ -0.481e-7■■■■□ 23.7
UPF1Q92900 DDR1-238ENST00000446312 3202 ntTSL 5 BASIC12.03□□□□□ -0.481e-7■■■■□ 23.7
UPF1Q92900 DDR1-227ENST00000376570 3820 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.491e-7■■■■□ 23.7
UPF1Q92900 DDR1-239ENST00000452441 3857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.581e-7■■■■□ 23.7
UPF1Q92900 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.227e-12■■■■□ 23.7
UPF1Q92900 SPTY2D1-201ENST00000336349 5754 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.525e-8■■■■□ 23.7
UPF1Q92900 POLE3-204ENST00000479871 2396 ntTSL 214.46□□□□□ -0.13e-7■■■■□ 23.7
UPF1Q92900 POLE3-201ENST00000374169 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.113e-7■■■■□ 23.7
UPF1Q92900 POLE3-202ENST00000374171 2191 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.163e-7■■■■□ 23.7
UPF1Q92900 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.194e-8■■■■□ 23.7
UPF1Q92900 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.054e-8■■■■□ 23.7
UPF1Q92900 AK4-201ENST00000327299 6836 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.534e-8■■■■□ 23.7
UPF1Q92900 SYNCRIP-203ENST00000444272 610 ntTSL 324.6■■□□□ 1.533e-16■■■■□ 23.7
UPF1Q92900 DHDDS-201ENST00000236342 1403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.169e-8■■■■□ 23.7
UPF1Q92900 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.053e-16■■■■□ 23.7
UPF1Q92900 MAN2A2-221ENST00000560451 5124 ntTSL 1 (best)19.74■□□□□ 0.751e-16■■■■□ 23.7
UPF1Q92900 MAN2A2-204ENST00000558161 4918 ntTSL 1 (best)12.55□□□□□ -0.41e-16■■■■□ 23.7
UPF1Q92900 MAN2A2-215ENST00000559704 449 ntTSL 37.8□□□□□ -1.161e-16■■■■□ 23.7
UPF1Q92900 P3H1-211ENST00000472802 646 ntTSL 220.8■□□□□ 0.923e-8■■■■□ 23.7
UPF1Q92900 P3H1-209ENST00000462474 581 ntTSL 220.63■□□□□ 0.893e-8■■■■□ 23.7
UPF1Q92900 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.553e-8■■■■□ 23.7
UPF1Q92900 P3H1-207ENST00000460031 2726 ntTSL 517.5■□□□□ 0.393e-8■■■■□ 23.7
UPF1Q92900 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.393e-8■■■■□ 23.7
UPF1Q92900 P3H1-214ENST00000495874 2813 ntTSL 216.33■□□□□ 0.213e-8■■■■□ 23.7
UPF1Q92900 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.053e-8■■■■□ 23.7
UPF1Q92900 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC8.23□□□□□ -1.091e-7■■■■□ 23.7
UPF1Q92900 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC8.17□□□□□ -1.11e-7■■■■□ 23.7
UPF1Q92900 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC7.95□□□□□ -1.141e-7■■■■□ 23.7
UPF1Q92900 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.29■□□□□ 0.681e-8■■■■□ 23.7
UPF1Q92900 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.011e-8■■■■□ 23.7
UPF1Q92900 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.261e-8■■■■□ 23.7
UPF1Q92900 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC27.24■■□□□ 1.957e-7■■■■□ 23.7
UPF1Q92900 DLST-204ENST00000554612 1479 ntTSL 213.12□□□□□ -0.311e-7■■■■□ 23.7
UPF1Q92900 NAGA-201ENST00000396398 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.438e-8■■■■□ 23.7
UPF1Q92900 TGFBR3-209ENST00000532540 3913 ntTSL 1 (best)7.66□□□□□ -1.186e-7■■■■□ 23.7
UPF1Q92900 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.26e-7■■■■□ 23.7
UPF1Q92900 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.336e-7■■■■□ 23.7
UPF1Q92900 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.67■■□□□ 1.061e-12■■■■□ 23.7
UPF1Q92900 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.51e-12■■■■□ 23.7
UPF1Q92900 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.441e-12■■■■□ 23.7
UPF1Q92900 DMPK-206ENST00000588522 2920 ntTSL 516.73■□□□□ 0.271e-12■■■■□ 23.7
UPF1Q92900 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.263e-7■■■■□ 23.7
UPF1Q92900 TGFBR3-210ENST00000533089 6455 ntTSL 1 (best)7.09□□□□□ -1.273e-7■■■■□ 23.7
UPF1Q92900 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.171e-8■■■■□ 23.7
UPF1Q92900 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.77■□□□□ 0.442e-8■■■■□ 23.6
UPF1Q92900 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.92■□□□□ 0.32e-8■■■■□ 23.6
UPF1Q92900 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.272e-8■■■■□ 23.6
UPF1Q92900 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.68■□□□□ 0.262e-8■■■■□ 23.6
UPF1Q92900 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.222e-8■■■■□ 23.6
UPF1Q92900 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.75■□□□□ 0.112e-8■■■■□ 23.6
UPF1Q92900 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.25■□□□□ 0.032e-8■■■■□ 23.6
UPF1Q92900 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.25■□□□□ 0.032e-8■■■■□ 23.6
UPF1Q92900 TPD52L2-208ENST00000474176 4053 ntTSL 211.19□□□□□ -0.622e-8■■■■□ 23.6
UPF1Q92900 ANGPTL4-205ENST00000594875 531 ntTSL 225.52■■□□□ 1.682e-6■■■■□ 23.6
UPF1Q92900 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.182e-6■■■■□ 23.6
UPF1Q92900 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC21.58■■□□□ 1.042e-6■■■■□ 23.6
UPF1Q92900 ANGPTL4-203ENST00000593998 1798 ntTSL 1 (best)20.61■□□□□ 0.892e-6■■■■□ 23.6
UPF1Q92900 ANGPTL4-206ENST00000595079 1719 ntTSL 220.36■□□□□ 0.852e-6■■■■□ 23.6
UPF1Q92900 AGTRAP-209ENST00000476512 942 ntTSL 325.73■■□□□ 1.714e-7■■■■□ 23.6
UPF1Q92900 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC24.53■■□□□ 1.524e-7■■■■□ 23.6
UPF1Q92900 PDIA3-202ENST00000434494 2107 ntTSL 215.98■□□□□ 0.153e-14■■■■□ 23.6
UPF1Q92900 PDIA3-206ENST00000497349 739 ntTSL 211.39□□□□□ -0.593e-14■■■■□ 23.6
UPF1Q92900 MCM4-212ENST00000521151 1125 ntTSL 213.69□□□□□ -0.221e-61■■■■□ 23.6
UPF1Q92900 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC11.11□□□□□ -0.637e-25■■■■□ 23.6
UPF1Q92900 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC9.3□□□□□ -0.927e-25■■■■□ 23.6
UPF1Q92900 PLIN2-204ENST00000434144 623 ntTSL 37.92□□□□□ -1.147e-25■■■■□ 23.6
UPF1Q92900 CERS2-202ENST00000345896 2170 ntTSL 232.59■■■□□ 2.812e-9■■■■□ 23.6
UPF1Q92900 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.092e-9■■■■□ 23.6
UPF1Q92900 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.052e-9■■■■□ 23.6
UPF1Q92900 CERS2-209ENST00000482825 1618 ntTSL 518.53■□□□□ 0.562e-9■■■■□ 23.6
UPF1Q92900 CERS2-213ENST00000560793 1661 ntTSL 1 (best)17.64■□□□□ 0.422e-9■■■■□ 23.6
UPF1Q92900 CERS2-214ENST00000561294 1803 ntTSL 5 BASIC14.25□□□□□ -0.132e-9■■■■□ 23.6
UPF1Q92900 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.87■□□□□ 0.452e-7■■■■□ 23.6
UPF1Q92900 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.08■□□□□ 0.332e-7■■■■□ 23.6
Retrieved 100 of 15,879 protein–RNA pairs in 132.5 ms