Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AK3-203ENST00000447596 705 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DQA1P01909 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC15.06■□□□□ 0
HLA-DQA1P01909 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DQA1P01909 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC15.06■□□□□ 0
HLA-DQA1P01909 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
HLA-DQA1P01909 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
HLA-DQA1P01909 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HLA-DQA1P01909 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
HLA-DQA1P01909 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HLA-DQA1P01909 TREX1-205ENST00000625293 1783 ntBASIC15.06■□□□□ 0
HLA-DQA1P01909 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.06■□□□□ 0
HLA-DQA1P01909 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DQA1P01909 LINC01465-201ENST00000408887 1940 ntBASIC15.05■□□□□ 0
HLA-DQA1P01909 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.05■□□□□ 0
HLA-DQA1P01909 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
HLA-DQA1P01909 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQA1P01909 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQA1P01909 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DQA1P01909 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQA1P01909 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
HLA-DQA1P01909 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
HLA-DQA1P01909 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQA1P01909 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ -0
HLA-DQA1P01909 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DQA1P01909 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
HLA-DQA1P01909 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DQA1P01909 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.05■□□□□ -0
HLA-DQA1P01909 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQA1P01909 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DQA1P01909 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DQA1P01909 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
HLA-DQA1P01909 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
HLA-DQA1P01909 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.04■□□□□ -0
HLA-DQA1P01909 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC15.04■□□□□ -0
HLA-DQA1P01909 AC133637.1-201ENST00000624115 1537 ntBASIC15.04■□□□□ -0
HLA-DQA1P01909 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC15.04■□□□□ -0
HLA-DQA1P01909 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC15.04■□□□□ -0
HLA-DQA1P01909 CLTA-206ENST00000466396 695 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DQA1P01909 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC15.04■□□□□ -0
HLA-DQA1P01909 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DQA1P01909 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQA1P01909 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQA1P01909 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQA1P01909 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQA1P01909 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
HLA-DQA1P01909 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQA1P01909 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQA1P01909 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQA1P01909 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQA1P01909 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms