RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NISCHQ9Y2I1 1504 aa37.22■■■■□ 3.55
CCDC3-201ENST00000378825 SHROOM4Q9ULL8 1493 aa32.14■■■□□ 2.74
CCDC3-201ENST00000378825 SUPT5HO00267 1087 aaKnown RBP31.74■■■□□ 2.67
CCDC3-201ENST00000378825 CCDC180Q9P1Z9 1646 aa31.55■■■□□ 2.64
CCDC3-201ENST00000378825 ZCCHC6Q5VYS8 1495 aaKnown RBP31.43■■■□□ 2.62
CCDC3-201ENST00000378825 DCAF8L2P0C7V8 631 aa31.3■■■□□ 2.6
CCDC3-201ENST00000378825 MYO15BQ96JP2 1530 aa31.12■■■□□ 2.57
CCDC3-201ENST00000378825 HRCP23327 699 aa30.97■■■□□ 2.55
CCDC3-201ENST00000378825 CHIC1Q5VXU3 224 aa30.95■■■□□ 2.54
CCDC3-201ENST00000378825 PCGF6Q9BYE7 350 aa30.77■■■□□ 2.52
CCDC3-201ENST00000378825 PPARGC1BQ86YN6 1023 aaKnown RBP30.62■■■□□ 2.49
CCDC3-201ENST00000378825 DCAF1Q9Y4B6 1507 aa30.38■■■□□ 2.45
CCDC3-201ENST00000378825 LOC105371045A0A1W2PR82 267 aa30.31■■■□□ 2.44
CCDC3-201ENST00000378825 SCRIBQ14160 1630 aa29.82■■■□□ 2.36
CCDC3-201ENST00000378825 TRIM26Q12899 539 aaPredicted RBP29.75■■■□□ 2.35
CCDC3-201ENST00000378825 ABCC9O60706 1549 aa29.71■■■□□ 2.35
CCDC3-201ENST00000378825 RSF1Q96T23 1441 aaPredicted RBP29.46■■■□□ 2.31
CCDC3-201ENST00000378825 FAM9AQ8IZU1 332 aaPredicted RBP29.41■■■□□ 2.3
CCDC3-201ENST00000378825 EHMT2Q96KQ7 1210 aa29.38■■■□□ 2.29
CCDC3-201ENST00000378825 TRIM41Q8WV44 630 aa29.29■■■□□ 2.28
CCDC3-201ENST00000378825 NACADO15069 1562 aa29.28■■■□□ 2.28
CCDC3-201ENST00000378825 CECR2Q9BXF3 1484 aa29.19■■■□□ 2.26
CCDC3-201ENST00000378825 RB1CC1Q8TDY2 1594 aa29.15■■■□□ 2.26
CCDC3-201ENST00000378825 ZEB1P37275 1124 aaPredicted RBP29.14■■■□□ 2.26
CCDC3-201ENST00000378825 SCAF1Q9H7N4 1312 aaKnown RBP29.09■■■□□ 2.25
CCDC3-201ENST00000378825 MROH2BQ7Z745 1585 aa29.01■■■□□ 2.24
CCDC3-201ENST00000378825 WIZO95785 1651 aa28.85■■■□□ 2.21
CCDC3-201ENST00000378825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.75■■■□□ 2.19
CCDC3-201ENST00000378825 PELP1Q8IZL8 1130 aaKnown RBP28.67■■■□□ 2.18
CCDC3-201ENST00000378825 BAZ1AQ9NRL2 1556 aaPredicted RBP28.57■■■□□ 2.16
CCDC3-201ENST00000378825 CCER1Q8TC90 406 aaPredicted RBP28.56■■■□□ 2.16
CCDC3-201ENST00000378825 TTBK1Q5TCY1 1321 aaPredicted RBP28.54■■■□□ 2.16
CCDC3-201ENST00000378825 NEUROD1Q13562 356 aa28.51■■■□□ 2.16
CCDC3-201ENST00000378825 PABPN1Q86U42 306 aaKnown RBP eCLIP28.5■■■□□ 2.15
CCDC3-201ENST00000378825 UNC13AQ9UPW8 1703 aa28.46■■■□□ 2.15
CCDC3-201ENST00000378825 ACIN1Q9UKV3 1341 aaKnown RBP28.44■■■□□ 2.14
CCDC3-201ENST00000378825 SMARCA4P51532 1647 aa28.37■■■□□ 2.13
CCDC3-201ENST00000378825 DIEXFQ68CQ4 756 aaKnown RBP28.3■■■□□ 2.12
CCDC3-201ENST00000378825 TOP2AP11388 1531 aaKnown RBP28.29■■■□□ 2.12
CCDC3-201ENST00000378825 CCDC88BA6NC98 1476 aa28.27■■■□□ 2.12
CCDC3-201ENST00000378825 GTF3C3Q9Y5Q9 886 aa28.26■■■□□ 2.11
CCDC3-201ENST00000378825 EIF4G1Q04637 1599 aaKnown RBP28.25■■■□□ 2.11
CCDC3-201ENST00000378825 ABCC8Q09428 1581 aa28.21■■■□□ 2.11
CCDC3-201ENST00000378825 SMARCA2P51531 1590 aa28.17■■■□□ 2.1
CCDC3-201ENST00000378825 BICRAQ9NZM4 1560 aa28.15■■■□□ 2.1
CCDC3-201ENST00000378825 CEP162Q5TB80 1403 aa28.05■■■□□ 2.08
CCDC3-201ENST00000378825 CENPBP07199 599 aaPredicted RBP28.03■■■□□ 2.08
CCDC3-201ENST00000378825 SOGA1O94964 1423 aa28.02■■■□□ 2.08
CCDC3-201ENST00000378825 WRNQ14191 1432 aaPredicted RBP eCLIP27.98■■■□□ 2.07
CCDC3-201ENST00000378825 YTHDC1Q96MU7 727 aaKnown RBP27.92■■■□□ 2.06
CCDC3-201ENST00000378825 RUSC2Q8N2Y8 1516 aa27.92■■■□□ 2.06
CCDC3-201ENST00000378825 UBTFP17480 764 aaKnown RBP27.88■■■□□ 2.05
CCDC3-201ENST00000378825 ZNF316A6NFI3 1004 aaPredicted RBP27.85■■■□□ 2.05
CCDC3-201ENST00000378825 TNIKQ9UKE5 1360 aa27.82■■■□□ 2.04
CCDC3-201ENST00000378825 CSRNP3Q8WYN3 585 aa27.79■■■□□ 2.04
CCDC3-201ENST00000378825 HNRNPUL2Q1KMD3 747 aaKnown RBP27.75■■■□□ 2.03
CCDC3-201ENST00000378825 ATAD2BQ9ULI0 1458 aa27.73■■■□□ 2.03
CCDC3-201ENST00000378825 PEG3Q9GZU2 1588 aa27.73■■■□□ 2.03
CCDC3-201ENST00000378825 MIER1Q8N108 512 aa27.72■■■□□ 2.03
CCDC3-201ENST00000378825 BAZ1BQ9UIG0 1483 aaKnown RBP27.66■■■□□ 2.02
CCDC3-201ENST00000378825 GOLGA3Q08378 1498 aa27.56■■■□□ 2
CCDC3-201ENST00000378825 SYNJ1O43426 1573 aa27.55■■■□□ 2
CCDC3-201ENST00000378825 EEA1Q15075 1411 aa27.53■■■□□ 2
CCDC3-201ENST00000378825 RANGAP1P46060 587 aaPredicted RBP27.51■■□□□ 1.99
CCDC3-201ENST00000378825 CLIP1P30622 1438 aa27.37■■□□□ 1.97
CCDC3-201ENST00000378825 CEP164Q9UPV0 1460 aa27.3■■□□□ 1.96
CCDC3-201ENST00000378825 VPS8Q8N3P4 1428 aa27.26■■□□□ 1.95
CCDC3-201ENST00000378825 RAPGEF2Q9Y4G8 1499 aa27.24■■□□□ 1.95
CCDC3-201ENST00000378825 MYT1Q01538 1121 aa27.23■■□□□ 1.95
CCDC3-201ENST00000378825 APLP2Q06481 763 aa27.23■■□□□ 1.95
CCDC3-201ENST00000378825 KIF21BO75037 1637 aa27.21■■□□□ 1.95
CCDC3-201ENST00000378825 NCAPD3P42695 1498 aa27.16■■□□□ 1.94
CCDC3-201ENST00000378825 TOP2BQ02880 1626 aa27.13■■□□□ 1.93
CCDC3-201ENST00000378825 HMGXB3Q12766 1538 aa27.08■■□□□ 1.93
CCDC3-201ENST00000378825 DHX57Q6P158 1386 aaKnown RBP27.06■■□□□ 1.92
CCDC3-201ENST00000378825 KANK4Q5T7N3 995 aaPredicted RBP27.03■■□□□ 1.92
CCDC3-201ENST00000378825 SUPT16HQ9Y5B9 1047 aaKnown RBP27.01■■□□□ 1.91
CCDC3-201ENST00000378825 CUX1P39880 1505 aa27■■□□□ 1.91
CCDC3-201ENST00000378825 BIVM-ERCC5R4GMW8 1640 aa26.99■■□□□ 1.91
CCDC3-201ENST00000378825 CFTRP13569 1480 aa26.92■■□□□ 1.9
CCDC3-201ENST00000378825 KCNH8Q96L42 1107 aa26.88■■□□□ 1.89
CCDC3-201ENST00000378825 PRXQ9BXM0 1461 aa26.87■■□□□ 1.89
CCDC3-201ENST00000378825 ARAP1Q96P48 1450 aa26.87■■□□□ 1.89
CCDC3-201ENST00000378825 ITGAEP38570 1179 aa26.86■■□□□ 1.89
CCDC3-201ENST00000378825 CLSPNQ9HAW4 1339 aa26.82■■□□□ 1.88
CCDC3-201ENST00000378825 KIF27Q86VH2 1401 aa26.82■■□□□ 1.88
CCDC3-201ENST00000378825 ERICH3Q5RHP9 1530 aa26.76■■□□□ 1.87
CCDC3-201ENST00000378825 TSHZ2Q9NRE2 1034 aa26.74■■□□□ 1.87
CCDC3-201ENST00000378825 CADPSQ9ULU8 1353 aa26.7■■□□□ 1.87
CCDC3-201ENST00000378825 RRBP1Q9P2E9 1410 aaKnown RBP26.68■■□□□ 1.86
CCDC3-201ENST00000378825 CUX2O14529 1486 aa26.67■■□□□ 1.86
CCDC3-201ENST00000378825 BCANQ96GW7 911 aa26.66■■□□□ 1.86
CCDC3-201ENST00000378825 CC2D2AQ9P2K1 1620 aa26.63■■□□□ 1.85
CCDC3-201ENST00000378825 CCNB3Q8WWL7 1395 aa26.63■■□□□ 1.85
CCDC3-201ENST00000378825 IGF1RP08069 1367 aa26.59■■□□□ 1.85
CCDC3-201ENST00000378825 FGD5Q6ZNL6 1462 aa26.56■■□□□ 1.84
CCDC3-201ENST00000378825 RAB3GAP2Q9H2M9 1393 aa26.55■■□□□ 1.84
CCDC3-201ENST00000378825 ARHGAP35Q9NRY4 1499 aa26.55■■□□□ 1.84
CCDC3-201ENST00000378825 PRDM2Q13029 1718 aa26.52■■□□□ 1.84
CCDC3-201ENST00000378825 DDX10Q13206 875 aaKnown RBP26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms