Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PHKA2-206ENST00000473739 751 ntTSL 316.45■□□□□ 0.225e-12■■□□□ 13.5
DDX55Q8NHQ9 BAG6-249ENST00000441793 783 ntTSL 214.59□□□□□ -0.075e-12■■□□□ 13.5
DDX55Q8NHQ9 PHKA2-205ENST00000473597 514 ntTSL 214.19□□□□□ -0.145e-12■■□□□ 13.5
DDX55Q8NHQ9 BAG6-238ENST00000422948 513 ntTSL 28.66□□□□□ -1.025e-12■■□□□ 13.5
DDX55Q8NHQ9 TM2D3-209ENST00000560013 1868 ntTSL 226.64■■□□□ 1.862e-7■■□□□ 13.5
DDX55Q8NHQ9 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.052e-7■■□□□ 13.5
DDX55Q8NHQ9 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC20.14■□□□□ 0.812e-7■■□□□ 13.5
DDX55Q8NHQ9 TM2D3-202ENST00000347970 1329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.182e-7■■□□□ 13.5
DDX55Q8NHQ9 TM2D3-208ENST00000559891 2133 ntTSL 1 (best)13.58□□□□□ -0.242e-7■■□□□ 13.5
DDX55Q8NHQ9 TM2D3-215ENST00000561373 1734 ntTSL 2 BASIC12.9□□□□□ -0.342e-7■■□□□ 13.5
DDX55Q8NHQ9 TM2D3-203ENST00000428002 1267 ntTSL 2 BASIC12.73□□□□□ -0.372e-7■■□□□ 13.5
DDX55Q8NHQ9 TM2D3-204ENST00000558129 864 ntTSL 311.72□□□□□ -0.532e-7■■□□□ 13.5
DDX55Q8NHQ9 PLXNB1-218ENST00000485535 3264 ntTSL 212.88□□□□□ -0.355e-7■■□□□ 13.5
DDX55Q8NHQ9 FKBP8-214ENST00000609656 220 ntTSL 27.72□□□□□ -1.171e-21■■□□□ 13.5
DDX55Q8NHQ9 PABPC1-204ENST00000517990 487 ntTSL 57.85□□□□□ -1.155e-71■■□□□ 13.5
DDX55Q8NHQ9 PABPC1-223ENST00000523636 818 ntTSL 56.51□□□□□ -1.375e-71■■□□□ 13.5
DDX55Q8NHQ9 MAGED1-209ENST00000485420 2906 ntTSL 513.5□□□□□ -0.252e-6■■□□□ 13.5
DDX55Q8NHQ9 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.282e-6■■□□□ 13.5
DDX55Q8NHQ9 MAGED1-202ENST00000375695 2875 ntTSL 1 (best) BASIC12.99□□□□□ -0.332e-6■■□□□ 13.5
DDX55Q8NHQ9 MAGED1-203ENST00000375722 2806 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.362e-6■■□□□ 13.5
DDX55Q8NHQ9 MAGED1-210ENST00000494718 5418 ntTSL 211.61□□□□□ -0.552e-6■■□□□ 13.5
DDX55Q8NHQ9 MAGED1-204ENST00000375772 2701 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.672e-6■■□□□ 13.5
DDX55Q8NHQ9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.563e-24■■□□□ 13.5
DDX55Q8NHQ9 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.13■□□□□ 0.493e-24■■□□□ 13.5
DDX55Q8NHQ9 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC14.97□□□□□ -0.013e-24■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.286e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.91■■□□□ 1.266e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.026e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.96e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-244ENST00000555650 1588 ntTSL 219.44■□□□□ 0.76e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.616e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-271ENST00000557353 1919 ntTSL 218.57■□□□□ 0.566e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.516e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.486e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.78■□□□□ 0.446e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.416e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.416e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.39■□□□□ 0.376e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.7■□□□□ 0.266e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC15.12■□□□□ 0.016e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.066e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-258ENST00000556716 2718 ntTSL 214.25□□□□□ -0.136e-11■■□□□ 13.5
DDX55Q8NHQ9 NDRG2-274ENST00000557633 527 ntTSL 314.11□□□□□ -0.156e-11■■□□□ 13.5
DDX55Q8NHQ9 SNRPA-202ENST00000596860 336 ntTSL 210.28□□□□□ -0.761e-35■■□□□ 13.5
DDX55Q8NHQ9 ATP1B3-204ENST00000466678 1708 ntTSL 316.02■□□□□ 0.154e-6■■□□□ 13.5
DDX55Q8NHQ9 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.144e-6■■□□□ 13.5
DDX55Q8NHQ9 ATP1B3-202ENST00000462082 837 ntTSL 3 BASIC8.91□□□□□ -0.984e-6■■□□□ 13.5
DDX55Q8NHQ9 ATP1B3-203ENST00000465172 1951 ntTSL 28.07□□□□□ -1.124e-6■■□□□ 13.5
DDX55Q8NHQ9 ATP1B3-207ENST00000484727 657 ntTSL 26.44□□□□□ -1.384e-6■■□□□ 13.5
DDX55Q8NHQ9 RAC3-204ENST00000585014 798 ntTSL 222.53■■□□□ 1.22e-6■■□□□ 13.5
DDX55Q8NHQ9 NEDD8-MDP1-203ENST00000604306 681 ntTSL 514.02□□□□□ -0.174e-11■■□□□ 13.5
DDX55Q8NHQ9 NEDD8-MDP1-201ENST00000530579 471 ntTSL 29.91□□□□□ -0.824e-11■■□□□ 13.5
DDX55Q8NHQ9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.991e-9■■□□□ 13.5
DDX55Q8NHQ9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.122e-9■■□□□ 13.5
DDX55Q8NHQ9 NELFA-205ENST00000416258 2188 ntTSL 521.03■□□□□ 0.961e-9■■□□□ 13.5
DDX55Q8NHQ9 NELFA-201ENST00000333877 2228 ntTSL 220.66■□□□□ 0.91e-9■■□□□ 13.5
DDX55Q8NHQ9 PHGDH-214ENST00000641314 1558 nt20.34■□□□□ 0.852e-7■■□□□ 13.5
DDX55Q8NHQ9 PHGDH-232ENST00000641947 1774 nt20.08■□□□□ 0.812e-7■■□□□ 13.5
DDX55Q8NHQ9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.771e-9■■□□□ 13.5
DDX55Q8NHQ9 NELFA-213ENST00000467661 1707 ntTSL 1 (best)19.07■□□□□ 0.641e-9■■□□□ 13.5
DDX55Q8NHQ9 SNU13-205ENST00000463675 786 ntTSL 318.44■□□□□ 0.541e-9■■□□□ 13.5
DDX55Q8NHQ9 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.532e-9■■□□□ 13.5
DDX55Q8NHQ9 NELFA-212ENST00000463820 2495 ntTSL 218.13■□□□□ 0.491e-9■■□□□ 13.5
DDX55Q8NHQ9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.98■□□□□ 0.471e-9■■□□□ 13.5
DDX55Q8NHQ9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.441e-9■■□□□ 13.5
DDX55Q8NHQ9 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.431e-9■■□□□ 13.5
DDX55Q8NHQ9 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.291e-9■■□□□ 13.5
DDX55Q8NHQ9 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.259e-9■■□□□ 13.5
DDX55Q8NHQ9 SNU13-204ENST00000402458 462 ntTSL 3 BASIC16.18■□□□□ 0.181e-9■■□□□ 13.5
DDX55Q8NHQ9 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.52■□□□□ 0.071e-9■■□□□ 13.5
DDX55Q8NHQ9 SNU13-208ENST00000488571 556 ntTSL 514.35□□□□□ -0.111e-9■■□□□ 13.5
DDX55Q8NHQ9 SNU13-206ENST00000469028 736 ntTSL 513.33□□□□□ -0.281e-9■■□□□ 13.5
DDX55Q8NHQ9 DHFR-205ENST00000511032 1474 ntTSL 2 BASIC12.12□□□□□ -0.471e-9■■□□□ 13.5
DDX55Q8NHQ9 DHFR-202ENST00000504396 1447 ntTSL 2 BASIC11.42□□□□□ -0.581e-9■■□□□ 13.5
DDX55Q8NHQ9 DHFR-206ENST00000513048 994 ntTSL 1 (best)10.84□□□□□ -0.671e-9■■□□□ 13.5
DDX55Q8NHQ9 TEX261-205ENST00000478068 3579 ntTSL 210.49□□□□□ -0.731e-9■■□□□ 13.5
DDX55Q8NHQ9 AC007040.2-202ENST00000453130 423 ntTSL 39.36□□□□□ -0.911e-9■■□□□ 13.5
DDX55Q8NHQ9 GNG5-203ENST00000487806 557 ntTSL 36.91□□□□□ -1.32e-9■■□□□ 13.5
DDX55Q8NHQ9 DHFR-204ENST00000508282 545 ntTSL 36.8□□□□□ -1.321e-9■■□□□ 13.5
DDX55Q8NHQ9 DHFR-207ENST00000513314 582 ntTSL 35.74□□□□□ -1.491e-9■■□□□ 13.5
DDX55Q8NHQ9 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.944e-14■■□□□ 13.5
DDX55Q8NHQ9 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.3■□□□□ 0.524e-14■■□□□ 13.5
DDX55Q8NHQ9 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.414e-14■■□□□ 13.5
DDX55Q8NHQ9 CRELD1-205ENST00000435417 966 ntTSL 516.89■□□□□ 0.294e-14■■□□□ 13.5
DDX55Q8NHQ9 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.034e-14■■□□□ 13.5
DDX55Q8NHQ9 C14orf119-201ENST00000319074 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.373e-7■■□□□ 13.5
DDX55Q8NHQ9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.011e-12■■□□□ 13.4
DDX55Q8NHQ9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC25.46■■□□□ 1.671e-12■■□□□ 13.4
DDX55Q8NHQ9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.61e-12■■□□□ 13.4
DDX55Q8NHQ9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.13■■□□□ 1.451e-12■■□□□ 13.4
DDX55Q8NHQ9 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC21.16■□□□□ 0.981e-12■■□□□ 13.4
DDX55Q8NHQ9 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.02■□□□□ 0.961e-12■■□□□ 13.4
DDX55Q8NHQ9 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.381e-12■■□□□ 13.4
DDX55Q8NHQ9 GNB2-211ENST00000469287 1702 ntTSL 217.18■□□□□ 0.341e-12■■□□□ 13.4
DDX55Q8NHQ9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.422e-6■■□□□ 13.4
DDX55Q8NHQ9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.42■■□□□ 1.022e-6■■□□□ 13.4
DDX55Q8NHQ9 MRPS24-204ENST00000467084 729 ntTSL 217.63■□□□□ 0.412e-6■■□□□ 13.4
DDX55Q8NHQ9 MRPS24-205ENST00000483330 392 ntTSL 215.82■□□□□ 0.122e-6■■□□□ 13.4
DDX55Q8NHQ9 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.112e-6■■□□□ 13.4
DDX55Q8NHQ9 MIR4647-201ENST00000583964 80 ntBASIC13.51□□□□□ -0.252e-6■■□□□ 13.4
Retrieved 100 of 15,504 protein–RNA pairs in 112.5 ms