RNA–Protein interactions for RNA: ENST00000596860.1

SNRPA-202, Transcript of small nuclear ribonucleoprotein polypeptide A, humanhuman

TSL 2

Gene SNRPA, Length 336 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA-202ENST00000596860 NISCHQ9Y2I1 1504 aa20.68■□□□□ 0.9
SNRPA-202ENST00000596860 CCDC180Q9P1Z9 1646 aa18.31■□□□□ 0.52
SNRPA-202ENST00000596860 ABCC9O60706 1549 aa17.37■□□□□ 0.37
SNRPA-202ENST00000596860 ZCCHC6Q5VYS8 1495 aaKnown RBP17.32■□□□□ 0.36
SNRPA-202ENST00000596860 DCAF1Q9Y4B6 1507 aa17.25■□□□□ 0.35
SNRPA-202ENST00000596860 MYO15BQ96JP2 1530 aa17.21■□□□□ 0.34
SNRPA-202ENST00000596860 NACADO15069 1562 aa17.1■□□□□ 0.33
SNRPA-202ENST00000596860 RB1CC1Q8TDY2 1594 aa16.98■□□□□ 0.31
SNRPA-202ENST00000596860 DCAF8L2P0C7V8 631 aa16.88■□□□□ 0.29
SNRPA-202ENST00000596860 UNC13AQ9UPW8 1703 aa16.58■□□□□ 0.24
SNRPA-202ENST00000596860 SCRIBQ14160 1630 aa16.56■□□□□ 0.24
SNRPA-202ENST00000596860 SHROOM4Q9ULL8 1493 aa16.45■□□□□ 0.22
SNRPA-202ENST00000596860 BICRAQ9NZM4 1560 aa16.41■□□□□ 0.22
SNRPA-202ENST00000596860 DNAJC5BQ9UF47 199 aa16.39■□□□□ 0.21
SNRPA-202ENST00000596860 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
SNRPA-202ENST00000596860 BAZ1AQ9NRL2 1556 aaPredicted RBP16.03■□□□□ 0.16
SNRPA-202ENST00000596860 CECR2Q9BXF3 1484 aa15.97■□□□□ 0.15
SNRPA-202ENST00000596860 SMARCA4P51532 1647 aa15.96■□□□□ 0.15
SNRPA-202ENST00000596860 EIF4G1Q04637 1599 aaKnown RBP15.95■□□□□ 0.14
SNRPA-202ENST00000596860 MROH2BQ7Z745 1585 aa15.88■□□□□ 0.13
SNRPA-202ENST00000596860 PEG3Q9GZU2 1588 aa15.88■□□□□ 0.13
SNRPA-202ENST00000596860 RSF1Q96T23 1441 aaPredicted RBP15.86■□□□□ 0.13
SNRPA-202ENST00000596860 SMARCA2P51531 1590 aa15.82■□□□□ 0.12
SNRPA-202ENST00000596860 CC2D2AQ9P2K1 1620 aa15.77■□□□□ 0.12
SNRPA-202ENST00000596860 ATAD2BQ9ULI0 1458 aa15.76■□□□□ 0.11
SNRPA-202ENST00000596860 NCAPD3P42695 1498 aa15.74■□□□□ 0.11
SNRPA-202ENST00000596860 HMGXB3Q12766 1538 aa15.73■□□□□ 0.11
SNRPA-202ENST00000596860 WIZO95785 1651 aa15.72■□□□□ 0.11
SNRPA-202ENST00000596860 TOP2AP11388 1531 aaKnown RBP15.65■□□□□ 0.1
SNRPA-202ENST00000596860 BAZ1BQ9UIG0 1483 aaKnown RBP15.64■□□□□ 0.09
SNRPA-202ENST00000596860 SUPT5HO00267 1087 aaKnown RBP15.59■□□□□ 0.09
SNRPA-202ENST00000596860 CCDC88BA6NC98 1476 aa15.41■□□□□ 0.06
SNRPA-202ENST00000596860 CFTRP13569 1480 aa15.28■□□□□ 0.04
SNRPA-202ENST00000596860 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
SNRPA-202ENST00000596860 PRDM2Q13029 1718 aa15.27■□□□□ 0.04
SNRPA-202ENST00000596860 CADPSQ9ULU8 1353 aa15.26■□□□□ 0.03
SNRPA-202ENST00000596860 DNAJC5Q9H3Z4 198 aa15.26■□□□□ 0.03
SNRPA-202ENST00000596860 CUX2O14529 1486 aa15.17■□□□□ 0.02
SNRPA-202ENST00000596860 AEBP2Q6ZN18 517 aaPredicted RBP15.14■□□□□ 0.01
SNRPA-202ENST00000596860 PDS5BQ9NTI5 1447 aa15.13■□□□□ 0.01
SNRPA-202ENST00000596860 NESP48681 1621 aa15.1■□□□□ 0.01
SNRPA-202ENST00000596860 FANCD2Q9BXW9 1451 aa15.06■□□□□ 0
SNRPA-202ENST00000596860 ERCC6Q03468 1493 aa15.05■□□□□ -0
SNRPA-202ENST00000596860 CEP164Q9UPV0 1460 aa15.02■□□□□ -0
SNRPA-202ENST00000596860 KIF21AQ7Z4S6 1674 aa15.01□□□□□ -0.01
SNRPA-202ENST00000596860 ABCC8Q09428 1581 aa15□□□□□ -0.01
SNRPA-202ENST00000596860 WRNQ14191 1432 aaPredicted RBP eCLIP14.94□□□□□ -0.02
SNRPA-202ENST00000596860 BIVM-ERCC5R4GMW8 1640 aa14.94□□□□□ -0.02
SNRPA-202ENST00000596860 MRC2Q9UBG0 1479 aa14.93□□□□□ -0.02
SNRPA-202ENST00000596860 DNMBPQ6XZF7 1577 aa14.93□□□□□ -0.02
SNRPA-202ENST00000596860 TOP2BQ02880 1626 aa14.92□□□□□ -0.02
SNRPA-202ENST00000596860 WDR62O43379 1518 aa14.9□□□□□ -0.02
SNRPA-202ENST00000596860 THOC2Q8NI27 1593 aaKnown RBP14.9□□□□□ -0.02
SNRPA-202ENST00000596860 CUX1P39880 1505 aa14.89□□□□□ -0.03
SNRPA-202ENST00000596860 URB2Q14146 1524 aaKnown RBP14.87□□□□□ -0.03
SNRPA-202ENST00000596860 TOPBP1Q92547 1522 aa14.87□□□□□ -0.03
SNRPA-202ENST00000596860 SYNJ1O43426 1573 aa14.87□□□□□ -0.03
SNRPA-202ENST00000596860 CHIC1Q5VXU3 224 aa14.87□□□□□ -0.03
SNRPA-202ENST00000596860 TRIM41Q8WV44 630 aa14.8□□□□□ -0.04
SNRPA-202ENST00000596860 POLA1P09884 1462 aaPredicted RBP14.77□□□□□ -0.04
SNRPA-202ENST00000596860 FGD5Q6ZNL6 1462 aa14.77□□□□□ -0.04
SNRPA-202ENST00000596860 WDR97A6NE52 1622 aa14.75□□□□□ -0.05
SNRPA-202ENST00000596860 IFT140Q96RY7 1462 aa14.72□□□□□ -0.05
SNRPA-202ENST00000596860 ABCA10Q8WWZ4 1543 aa14.71□□□□□ -0.05
SNRPA-202ENST00000596860 TARBP1Q13395 1621 aaKnown RBP14.7□□□□□ -0.06
SNRPA-202ENST00000596860 SOGA1O94964 1423 aa14.69□□□□□ -0.06
SNRPA-202ENST00000596860 EEA1Q15075 1411 aa14.69□□□□□ -0.06
SNRPA-202ENST00000596860 KIF27Q86VH2 1401 aa14.64□□□□□ -0.07
SNRPA-202ENST00000596860 RAD54L2Q9Y4B4 1467 aa14.63□□□□□ -0.07
SNRPA-202ENST00000596860 ABCA5Q8WWZ7 1642 aa14.62□□□□□ -0.07
SNRPA-202ENST00000596860 ERICH3Q5RHP9 1530 aa14.56□□□□□ -0.08
SNRPA-202ENST00000596860 GAPVD1Q14C86 1478 aa14.56□□□□□ -0.08
SNRPA-202ENST00000596860 EIF4G3O43432 1585 aaKnown RBP14.55□□□□□ -0.08
SNRPA-202ENST00000596860 PBRM1Q86U86 1689 aa14.52□□□□□ -0.08
SNRPA-202ENST00000596860 ZNF608Q9ULD9 1512 aaPredicted RBP14.52□□□□□ -0.08
SNRPA-202ENST00000596860 GRIN2BQ13224 1484 aa14.52□□□□□ -0.08
SNRPA-202ENST00000596860 CUL7Q14999 1698 aa14.52□□□□□ -0.09
SNRPA-202ENST00000596860 TDRD9Q8NDG6 1382 aaKnown RBP14.5□□□□□ -0.09
SNRPA-202ENST00000596860 RUSC2Q8N2Y8 1516 aa14.49□□□□□ -0.09
SNRPA-202ENST00000596860 IGF1RP08069 1367 aa14.48□□□□□ -0.09
SNRPA-202ENST00000596860 CSRNP3Q8WYN3 585 aa14.48□□□□□ -0.09
SNRPA-202ENST00000596860 AQRO60306 1485 aaKnown RBP eCLIP14.48□□□□□ -0.093e-11■■■■■ 44.8
SNRPA-202ENST00000596860 MAGI1Q96QZ7 1491 aaPredicted RBP14.48□□□□□ -0.09
SNRPA-202ENST00000596860 KIF21BO75037 1637 aa14.47□□□□□ -0.09
SNRPA-202ENST00000596860 PRXQ9BXM0 1461 aa14.46□□□□□ -0.09
SNRPA-202ENST00000596860 ADAMTS12P58397 1594 aa14.43□□□□□ -0.1
SNRPA-202ENST00000596860 FHAD1B1AJZ9 1412 aa14.43□□□□□ -0.1
SNRPA-202ENST00000596860 OSCARQ8IYS5 282 aa14.41□□□□□ -0.1
SNRPA-202ENST00000596860 CARMIL1Q5VZK9 1371 aa14.41□□□□□ -0.1
SNRPA-202ENST00000596860 SNAPC4Q5SXM2 1469 aa14.4□□□□□ -0.1
SNRPA-202ENST00000596860 RAPGEF2Q9Y4G8 1499 aa14.4□□□□□ -0.1
SNRPA-202ENST00000596860 SYNJ2O15056 1496 aa14.38□□□□□ -0.11
SNRPA-202ENST00000596860 GOLGA3Q08378 1498 aa14.37□□□□□ -0.11
SNRPA-202ENST00000596860 FAM9AQ8IZU1 332 aaPredicted RBP14.34□□□□□ -0.11
SNRPA-202ENST00000596860 GRIN2AQ12879 1464 aa14.32□□□□□ -0.12
SNRPA-202ENST00000596860 CHD1O14646 1710 aa14.28□□□□□ -0.12
SNRPA-202ENST00000596860 CTTNBP2Q8WZ74 1663 aa14.27□□□□□ -0.12
SNRPA-202ENST00000596860 NUP160Q12769 1436 aa14.27□□□□□ -0.12
SNRPA-202ENST00000596860 TNIKQ9UKE5 1360 aa14.27□□□□□ -0.12
SNRPA-202ENST00000596860 CHMP7Q8WUX9 453 aaPredicted RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms