RNA–Protein interactions for RNA: ENST00000523636.5

PABPC1-223, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 5

Gene PABPC1, Length 818 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-223ENST00000523636 AEBP2Q6ZN18 517 aaPredicted RBP18.65■□□□□ 0.58
PABPC1-223ENST00000523636 CHIC1Q5VXU3 224 aa18.34■□□□□ 0.53
PABPC1-223ENST00000523636 PHF23Q9BUL5 403 aaPredicted RBP16.11■□□□□ 0.17
PABPC1-223ENST00000523636 SENP3Q9H4L4 574 aaPredicted RBP15.86■□□□□ 0.13
PABPC1-223ENST00000523636 PLPPR3Q6T4P5 718 aa15.02■□□□□ -0
PABPC1-223ENST00000523636 FOXD1Q16676 465 aa14.75□□□□□ -0.05
PABPC1-223ENST00000523636 ADRA2BP18089 450 aa14.11□□□□□ -0.15
PABPC1-223ENST00000523636 PPP6R1Q9UPN7 881 aa14.11□□□□□ -0.15
PABPC1-223ENST00000523636 PIAS4Q8N2W9 510 aaPredicted RBP13.78□□□□□ -0.2
PABPC1-223ENST00000523636 MSH5O43196 834 aa13.73□□□□□ -0.21
PABPC1-223ENST00000523636 DNAJC5BQ9UF47 199 aa13.43□□□□□ -0.26
PABPC1-223ENST00000523636 NISCHQ9Y2I1 1504 aa13.32□□□□□ -0.28
PABPC1-223ENST00000523636 ABCC9O60706 1549 aa13.28□□□□□ -0.28
PABPC1-223ENST00000523636 PPP4R3CPQ6ZMV5 832 aa13.23□□□□□ -0.29
PABPC1-223ENST00000523636 KCNA4P22459 653 aa13.17□□□□□ -0.3
PABPC1-223ENST00000523636 POTEDQ86YR6 584 aa13.01□□□□□ -0.33
PABPC1-223ENST00000523636 SCAF1Q9H7N4 1312 aaKnown RBP13.01□□□□□ -0.33
PABPC1-223ENST00000523636 NCBP3Q53F19 620 aaKnown RBP13□□□□□ -0.33
PABPC1-223ENST00000523636 DNAJC5Q9H3Z4 198 aa12.89□□□□□ -0.35
PABPC1-223ENST00000523636 CNKSR2Q8WXI2 1034 aa12.84□□□□□ -0.35
PABPC1-223ENST00000523636 NPM3O75607 178 aaKnown RBP12.76□□□□□ -0.37
PABPC1-223ENST00000523636 MAPK8IP2Q13387 824 aaPredicted RBP12.71□□□□□ -0.37
PABPC1-223ENST00000523636 DMRT2Q9Y5R5 561 aa12.64□□□□□ -0.39
PABPC1-223ENST00000523636 SLC4A1APQ9BWU0 796 aaKnown RBP12.61□□□□□ -0.39
PABPC1-223ENST00000523636 RNF216Q9NWF9 866 aaPredicted RBP12.54□□□□□ -0.4
PABPC1-223ENST00000523636 EHMT2Q96KQ7 1210 aa12.46□□□□□ -0.41
PABPC1-223ENST00000523636 HOXD11P31277 338 aaPredicted RBP12.43□□□□□ -0.42
PABPC1-223ENST00000523636 CCDC180Q9P1Z9 1646 aa12.35□□□□□ -0.43
PABPC1-223ENST00000523636 CSRNP3Q8WYN3 585 aa12.26□□□□□ -0.45
PABPC1-223ENST00000523636 PABPN1Q86U42 306 aaKnown RBP eCLIP12.2□□□□□ -0.46
PABPC1-223ENST00000523636 RB1CC1Q8TDY2 1594 aa12.16□□□□□ -0.46
PABPC1-223ENST00000523636 ZBTB22O15209 634 aa12.11□□□□□ -0.47
PABPC1-223ENST00000523636 UNC13AQ9UPW8 1703 aa12.09□□□□□ -0.47
PABPC1-223ENST00000523636 FOXD4L1Q9NU39 408 aa12.09□□□□□ -0.47
PABPC1-223ENST00000523636 CECR2Q9BXF3 1484 aa12.03□□□□□ -0.48
PABPC1-223ENST00000523636 BICRAQ9NZM4 1560 aa12.03□□□□□ -0.48
PABPC1-223ENST00000523636 CC2D2AQ9P2K1 1620 aa11.98□□□□□ -0.49
PABPC1-223ENST00000523636 SLC4A2P04920 1241 aa11.98□□□□□ -0.49
PABPC1-223ENST00000523636 DCAF8L1A6NGE4 600 aa11.93□□□□□ -0.5
PABPC1-223ENST00000523636 NACADO15069 1562 aa11.86□□□□□ -0.51
PABPC1-223ENST00000523636 TRIM41Q8WV44 630 aa11.85□□□□□ -0.51
PABPC1-223ENST00000523636 MYCNP04198 464 aaPredicted RBP11.82□□□□□ -0.52
PABPC1-223ENST00000523636 CUX2O14529 1486 aa11.79□□□□□ -0.52
PABPC1-223ENST00000523636 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.79□□□□□ -0.52
PABPC1-223ENST00000523636 RNF39Q9H2S5 420 aa11.76□□□□□ -0.53
PABPC1-223ENST00000523636 EIF4G1Q04637 1599 aaKnown RBP11.71□□□□□ -0.53
PABPC1-223ENST00000523636 ATXN8OSP0DMR3 200 aa11.71□□□□□ -0.53
PABPC1-223ENST00000523636 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.65□□□□□ -0.54
PABPC1-223ENST00000523636 HNRNPUL2Q1KMD3 747 aaKnown RBP11.65□□□□□ -0.54
PABPC1-223ENST00000523636 U3KPZ7 1027 aaPredicted RBP11.63□□□□□ -0.55
PABPC1-223ENST00000523636 C1QBPQ07021 282 aaKnown RBP11.6□□□□□ -0.55
PABPC1-223ENST00000523636 SAMD1Q6SPF0 538 aaPredicted RBP11.59□□□□□ -0.55
PABPC1-223ENST00000523636 SHROOM4Q9ULL8 1493 aa11.57□□□□□ -0.56
PABPC1-223ENST00000523636 CACNB1Q02641 598 aaPredicted RBP11.56□□□□□ -0.56
PABPC1-223ENST00000523636 APLP2Q06481 763 aa11.48□□□□□ -0.57
PABPC1-223ENST00000523636 DCAF8L2P0C7V8 631 aa11.47□□□□□ -0.57
PABPC1-223ENST00000523636 ERCC6Q03468 1493 aa11.42□□□□□ -0.58
PABPC1-223ENST00000523636 ATF5Q9Y2D1 282 aaPredicted RBP11.41□□□□□ -0.58
PABPC1-223ENST00000523636 MYO15BQ96JP2 1530 aa11.4□□□□□ -0.58
PABPC1-223ENST00000523636 THOC2Q8NI27 1593 aaKnown RBP11.29□□□□□ -0.6
PABPC1-223ENST00000523636 ZNF219Q9P2Y4 722 aaPredicted RBP11.26□□□□□ -0.61
PABPC1-223ENST00000523636 NESP48681 1621 aa11.21□□□□□ -0.61
PABPC1-223ENST00000523636 SCRIBQ14160 1630 aa11.21□□□□□ -0.61
PABPC1-223ENST00000523636 ILDR1Q86SU0 546 aaPredicted RBP11.2□□□□□ -0.62
PABPC1-223ENST00000523636 SPINK5Q9NQ38 1064 aaPredicted RBP11.19□□□□□ -0.62
PABPC1-223ENST00000523636 CAPN15O75808 1086 aa11.15□□□□□ -0.62
PABPC1-223ENST00000523636 TRHP20396 242 aaPredicted RBP11.15□□□□□ -0.62
PABPC1-223ENST00000523636 RIMBP3CA6NJZ7 1639 aa11.14□□□□□ -0.63
PABPC1-223ENST00000523636 RIMBP3BA6NNM3 1639 aa11.14□□□□□ -0.63
PABPC1-223ENST00000523636 RIMBP3Q9UFD9 1639 aa11.14□□□□□ -0.63
PABPC1-223ENST00000523636 BAZ1AQ9NRL2 1556 aaPredicted RBP11.11□□□□□ -0.63
PABPC1-223ENST00000523636 DSG3P32926 999 aa11.07□□□□□ -0.64
PABPC1-223ENST00000523636 POLA2Q14181 598 aa11.05□□□□□ -0.64
PABPC1-223ENST00000523636 FKBP8Q14318 412 aa11.05□□□□□ -0.64
PABPC1-223ENST00000523636 SMARCA2P51531 1590 aa11.04□□□□□ -0.64
PABPC1-223ENST00000523636 KIF21AQ7Z4S6 1674 aa11.03□□□□□ -0.64
PABPC1-223ENST00000523636 OSCARQ8IYS5 282 aa11.02□□□□□ -0.65
PABPC1-223ENST00000523636 NCAPD3P42695 1498 aa11□□□□□ -0.65
PABPC1-223ENST00000523636 FBLN2P98095 1184 aa10.98□□□□□ -0.65
PABPC1-223ENST00000523636 ZBTB12Q9Y330 459 aaPredicted RBP10.97□□□□□ -0.65
PABPC1-223ENST00000523636 ARHGEF11O15085 1522 aa10.97□□□□□ -0.65
PABPC1-223ENST00000523636 MKRN4PQ13434 485 aaPredicted RBP10.95□□□□□ -0.66
PABPC1-223ENST00000523636 ABCB7O75027 752 aa10.93□□□□□ -0.66
PABPC1-223ENST00000523636 DCAF1Q9Y4B6 1507 aa10.92□□□□□ -0.66
PABPC1-223ENST00000523636 LAMC3Q9Y6N6 1575 aa10.87□□□□□ -0.67
PABPC1-223ENST00000523636 WDR62O43379 1518 aa10.86□□□□□ -0.67
PABPC1-223ENST00000523636 CYB5RLQ6IPT4 315 aa10.86□□□□□ -0.67
PABPC1-223ENST00000523636 ZCCHC6Q5VYS8 1495 aaKnown RBP10.86□□□□□ -0.67
PABPC1-223ENST00000523636 SPDYE4A6NLX3 237 aa10.84□□□□□ -0.67
PABPC1-223ENST00000523636 ARAP1Q96P48 1450 aa10.84□□□□□ -0.67
PABPC1-223ENST00000523636 ATAD2BQ9ULI0 1458 aa10.84□□□□□ -0.67
PABPC1-223ENST00000523636 HMGXB3Q12766 1538 aa10.82□□□□□ -0.68
PABPC1-223ENST00000523636 MRC2Q9UBG0 1479 aa10.8□□□□□ -0.68
PABPC1-223ENST00000523636 PDS5BQ9NTI5 1447 aa10.77□□□□□ -0.68
PABPC1-223ENST00000523636 PROM2Q8N271 834 aa10.75□□□□□ -0.69
PABPC1-223ENST00000523636 FBXO3Q9UK99 471 aa10.68□□□□□ -0.7
PABPC1-223ENST00000523636 SPDYE2BA6NHP3 402 aa10.67□□□□□ -0.7
PABPC1-223ENST00000523636 SPDYE6P0CI01 402 aa10.67□□□□□ -0.7
PABPC1-223ENST00000523636 SPDYE2Q495Y8 402 aa10.67□□□□□ -0.7
PABPC1-223ENST00000523636 SMARCA4P51532 1647 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms