RNA–Protein interactions for RNA: ENST00000523636.5

PABPC1-223, Transcript of poly(A) binding protein cytoplasmic 1, human

TSL 5

Gene PABPC1, Length 818 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC1-223	ENST00000523636	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.65	■□□□□ 0.58
PABPC1-223	ENST00000523636	CHIC1	Q5VXU3	224 aa		18.34	■□□□□ 0.53
PABPC1-223	ENST00000523636	PHF23	Q9BUL5	403 aa	Predicted RBP	16.11	■□□□□ 0.17
PABPC1-223	ENST00000523636	SENP3	Q9H4L4	574 aa	Predicted RBP	15.86	■□□□□ 0.13
PABPC1-223	ENST00000523636	PLPPR3	Q6T4P5	718 aa		15.02	■□□□□ -0
PABPC1-223	ENST00000523636	FOXD1	Q16676	465 aa		14.75	□□□□□ -0.05
PABPC1-223	ENST00000523636	ADRA2B	P18089	450 aa		14.11	□□□□□ -0.15
PABPC1-223	ENST00000523636	PPP6R1	Q9UPN7	881 aa		14.11	□□□□□ -0.15
PABPC1-223	ENST00000523636	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.78	□□□□□ -0.2
PABPC1-223	ENST00000523636	MSH5	O43196	834 aa		13.73	□□□□□ -0.21
PABPC1-223	ENST00000523636	DNAJC5B	Q9UF47	199 aa		13.43	□□□□□ -0.26
PABPC1-223	ENST00000523636	NISCH	Q9Y2I1	1504 aa		13.32	□□□□□ -0.28
PABPC1-223	ENST00000523636	ABCC9	O60706	1549 aa		13.28	□□□□□ -0.28
PABPC1-223	ENST00000523636	PPP4R3CP	Q6ZMV5	832 aa		13.23	□□□□□ -0.29
PABPC1-223	ENST00000523636	KCNA4	P22459	653 aa		13.17	□□□□□ -0.3
PABPC1-223	ENST00000523636	POTED	Q86YR6	584 aa		13.01	□□□□□ -0.33
PABPC1-223	ENST00000523636	SCAF1	Q9H7N4	1312 aa	Known RBP	13.01	□□□□□ -0.33
PABPC1-223	ENST00000523636	NCBP3	Q53F19	620 aa	Known RBP	13	□□□□□ -0.33
PABPC1-223	ENST00000523636	DNAJC5	Q9H3Z4	198 aa		12.89	□□□□□ -0.35
PABPC1-223	ENST00000523636	CNKSR2	Q8WXI2	1034 aa		12.84	□□□□□ -0.35
PABPC1-223	ENST00000523636	NPM3	O75607	178 aa	Known RBP	12.76	□□□□□ -0.37
PABPC1-223	ENST00000523636	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.71	□□□□□ -0.37
PABPC1-223	ENST00000523636	DMRT2	Q9Y5R5	561 aa		12.64	□□□□□ -0.39
PABPC1-223	ENST00000523636	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.61	□□□□□ -0.39
PABPC1-223	ENST00000523636	RNF216	Q9NWF9	866 aa	Predicted RBP	12.54	□□□□□ -0.4
PABPC1-223	ENST00000523636	EHMT2	Q96KQ7	1210 aa		12.46	□□□□□ -0.41
PABPC1-223	ENST00000523636	HOXD11	P31277	338 aa	Predicted RBP	12.43	□□□□□ -0.42
PABPC1-223	ENST00000523636	CCDC180	Q9P1Z9	1646 aa		12.35	□□□□□ -0.43
PABPC1-223	ENST00000523636	CSRNP3	Q8WYN3	585 aa		12.26	□□□□□ -0.45
PABPC1-223	ENST00000523636	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.2	□□□□□ -0.46
PABPC1-223	ENST00000523636	RB1CC1	Q8TDY2	1594 aa		12.16	□□□□□ -0.46
PABPC1-223	ENST00000523636	ZBTB22	O15209	634 aa		12.11	□□□□□ -0.47
PABPC1-223	ENST00000523636	UNC13A	Q9UPW8	1703 aa		12.09	□□□□□ -0.47
PABPC1-223	ENST00000523636	FOXD4L1	Q9NU39	408 aa		12.09	□□□□□ -0.47
PABPC1-223	ENST00000523636	CECR2	Q9BXF3	1484 aa		12.03	□□□□□ -0.48
PABPC1-223	ENST00000523636	BICRA	Q9NZM4	1560 aa		12.03	□□□□□ -0.48
PABPC1-223	ENST00000523636	CC2D2A	Q9P2K1	1620 aa		11.98	□□□□□ -0.49
PABPC1-223	ENST00000523636	SLC4A2	P04920	1241 aa		11.98	□□□□□ -0.49
PABPC1-223	ENST00000523636	DCAF8L1	A6NGE4	600 aa		11.93	□□□□□ -0.5
PABPC1-223	ENST00000523636	NACAD	O15069	1562 aa		11.86	□□□□□ -0.51
PABPC1-223	ENST00000523636	TRIM41	Q8WV44	630 aa		11.85	□□□□□ -0.51
PABPC1-223	ENST00000523636	MYCN	P04198	464 aa	Predicted RBP	11.82	□□□□□ -0.52
PABPC1-223	ENST00000523636	CUX2	O14529	1486 aa		11.79	□□□□□ -0.52
PABPC1-223	ENST00000523636	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.79	□□□□□ -0.52
PABPC1-223	ENST00000523636	RNF39	Q9H2S5	420 aa		11.76	□□□□□ -0.53
PABPC1-223	ENST00000523636	EIF4G1	Q04637	1599 aa	Known RBP	11.71	□□□□□ -0.53
PABPC1-223	ENST00000523636	ATXN8OS	P0DMR3	200 aa		11.71	□□□□□ -0.53
PABPC1-223	ENST00000523636	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.65	□□□□□ -0.54
PABPC1-223	ENST00000523636	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.65	□□□□□ -0.54
PABPC1-223	ENST00000523636		U3KPZ7	1027 aa	Predicted RBP	11.63	□□□□□ -0.55
PABPC1-223	ENST00000523636	C1QBP	Q07021	282 aa	Known RBP	11.6	□□□□□ -0.55
PABPC1-223	ENST00000523636	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.59	□□□□□ -0.55
PABPC1-223	ENST00000523636	SHROOM4	Q9ULL8	1493 aa		11.57	□□□□□ -0.56
PABPC1-223	ENST00000523636	CACNB1	Q02641	598 aa	Predicted RBP	11.56	□□□□□ -0.56
PABPC1-223	ENST00000523636	APLP2	Q06481	763 aa		11.48	□□□□□ -0.57
PABPC1-223	ENST00000523636	DCAF8L2	P0C7V8	631 aa		11.47	□□□□□ -0.57
PABPC1-223	ENST00000523636	ERCC6	Q03468	1493 aa		11.42	□□□□□ -0.58
PABPC1-223	ENST00000523636	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.41	□□□□□ -0.58
PABPC1-223	ENST00000523636	MYO15B	Q96JP2	1530 aa		11.4	□□□□□ -0.58
PABPC1-223	ENST00000523636	THOC2	Q8NI27	1593 aa	Known RBP	11.29	□□□□□ -0.6
PABPC1-223	ENST00000523636	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.26	□□□□□ -0.61
PABPC1-223	ENST00000523636	NES	P48681	1621 aa		11.21	□□□□□ -0.61
PABPC1-223	ENST00000523636	SCRIB	Q14160	1630 aa		11.21	□□□□□ -0.61
PABPC1-223	ENST00000523636	ILDR1	Q86SU0	546 aa	Predicted RBP	11.2	□□□□□ -0.62
PABPC1-223	ENST00000523636	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.19	□□□□□ -0.62
PABPC1-223	ENST00000523636	CAPN15	O75808	1086 aa		11.15	□□□□□ -0.62
PABPC1-223	ENST00000523636	TRH	P20396	242 aa	Predicted RBP	11.15	□□□□□ -0.62
PABPC1-223	ENST00000523636	RIMBP3C	A6NJZ7	1639 aa		11.14	□□□□□ -0.63
PABPC1-223	ENST00000523636	RIMBP3B	A6NNM3	1639 aa		11.14	□□□□□ -0.63
PABPC1-223	ENST00000523636	RIMBP3	Q9UFD9	1639 aa		11.14	□□□□□ -0.63
PABPC1-223	ENST00000523636	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.11	□□□□□ -0.63
PABPC1-223	ENST00000523636	DSG3	P32926	999 aa		11.07	□□□□□ -0.64
PABPC1-223	ENST00000523636	POLA2	Q14181	598 aa		11.05	□□□□□ -0.64
PABPC1-223	ENST00000523636	FKBP8	Q14318	412 aa		11.05	□□□□□ -0.64
PABPC1-223	ENST00000523636	SMARCA2	P51531	1590 aa		11.04	□□□□□ -0.64
PABPC1-223	ENST00000523636	KIF21A	Q7Z4S6	1674 aa		11.03	□□□□□ -0.64
PABPC1-223	ENST00000523636	OSCAR	Q8IYS5	282 aa		11.02	□□□□□ -0.65
PABPC1-223	ENST00000523636	NCAPD3	P42695	1498 aa		11	□□□□□ -0.65
PABPC1-223	ENST00000523636	FBLN2	P98095	1184 aa		10.98	□□□□□ -0.65
PABPC1-223	ENST00000523636	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.97	□□□□□ -0.65
PABPC1-223	ENST00000523636	ARHGEF11	O15085	1522 aa		10.97	□□□□□ -0.65
PABPC1-223	ENST00000523636	MKRN4P	Q13434	485 aa	Predicted RBP	10.95	□□□□□ -0.66
PABPC1-223	ENST00000523636	ABCB7	O75027	752 aa		10.93	□□□□□ -0.66
PABPC1-223	ENST00000523636	DCAF1	Q9Y4B6	1507 aa		10.92	□□□□□ -0.66
PABPC1-223	ENST00000523636	LAMC3	Q9Y6N6	1575 aa		10.87	□□□□□ -0.67
PABPC1-223	ENST00000523636	WDR62	O43379	1518 aa		10.86	□□□□□ -0.67
PABPC1-223	ENST00000523636	CYB5RL	Q6IPT4	315 aa		10.86	□□□□□ -0.67
PABPC1-223	ENST00000523636	ZCCHC6	Q5VYS8	1495 aa	Known RBP	10.86	□□□□□ -0.67
PABPC1-223	ENST00000523636	SPDYE4	A6NLX3	237 aa		10.84	□□□□□ -0.67
PABPC1-223	ENST00000523636	ARAP1	Q96P48	1450 aa		10.84	□□□□□ -0.67
PABPC1-223	ENST00000523636	ATAD2B	Q9ULI0	1458 aa		10.84	□□□□□ -0.67
PABPC1-223	ENST00000523636	HMGXB3	Q12766	1538 aa		10.82	□□□□□ -0.68
PABPC1-223	ENST00000523636	MRC2	Q9UBG0	1479 aa		10.8	□□□□□ -0.68
PABPC1-223	ENST00000523636	PDS5B	Q9NTI5	1447 aa		10.77	□□□□□ -0.68
PABPC1-223	ENST00000523636	PROM2	Q8N271	834 aa		10.75	□□□□□ -0.69
PABPC1-223	ENST00000523636	FBXO3	Q9UK99	471 aa		10.68	□□□□□ -0.7
PABPC1-223	ENST00000523636	SPDYE2B	A6NHP3	402 aa		10.67	□□□□□ -0.7
PABPC1-223	ENST00000523636	SPDYE6	P0CI01	402 aa		10.67	□□□□□ -0.7
PABPC1-223	ENST00000523636	SPDYE2	Q495Y8	402 aa		10.67	□□□□□ -0.7
PABPC1-223	ENST00000523636	SMARCA4	P51532	1647 aa		10.63	□□□□□ -0.71

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